View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4752-Insertion-9 (Length: 344)
Name: NF4752-Insertion-9
Description: NF4752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4752-Insertion-9 |
 | |
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| [»] chr1 (10 HSPs) |
| |
|
| [»] scaffold0312 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 5 - 344
Target Start/End: Complemental strand, 910194 - 909853
Alignment:
| Q |
5 |
acaagtattaagtatttttgaagtagcttctatatatata--gtggttattattgaagaagatggaattggtgtttttacttggaaaaccaaacaacttg |
102 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
910194 |
acaagtattaagtatttttgaagttgcttctatatatatatagtggttattattgaagaagatggaattggtgtttttacttggaaaaccaaacaacttg |
910095 |
T |
|
| Q |
103 |
accctgttgtaggatgtggcaaactggaaaagttccttgttgaactttgagcacttgaaaagccaaatgtttagggctccattgtgaagtatcagagtgg |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
910094 |
accctgttgtaggatgtggcaaactggaaaagttccttgttgaactttgagcacttgaaaagccaaatgtttaaggctccattgtgaagtatcagagtgg |
909995 |
T |
|
| Q |
203 |
caaatagcaacagctttaactctacttccatcagcaccttccaaaggcacagagtaaactttagttgcatctgttttgtgacagtaaaaaactgcataag |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
909994 |
caaatagcaacagctttaactctacttccatcagcaccttccaaaggcacagagtaaactttagttgcatctgttttgtgacagtaaaaaactgcataag |
909895 |
T |
|
| Q |
303 |
ggtaattccgtttgtggcacacaaccaaattgttctctccca |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
909894 |
ggtaattccgtttgtggcacacaaccaaattgttctctccca |
909853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 10 - 296
Target Start/End: Complemental strand, 924722 - 924434
Alignment:
| Q |
10 |
tattaagtatttttgaagtagcttctatatatata--gtggttattattgaagaagatggaattggtgtttttacttggaaaaccaaacaacttgaccct |
107 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||||| |||||||| | ||||| |||||||| ||||| || |||||||||||||| ||||||| |
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|
| T |
924722 |
tattaattatttttgaagtagcttctatatatatatagtggtaattattgacggagatgaaattggtggttttattttgaaaaccaaacaacatgaccct |
924623 |
T |
|
| Q |
108 |
gttgtaggatgtggcaaactggaaaagttccttgttgaactttgagcacttgaaaagccaaatgtttagggctccattgtgaagtatcagagtggcaaat |
207 |
Q |
| |
|
|| ||| || |||||||||||||| |||||| |||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
924622 |
gtggtaagaagtggcaaactggaacagttccaggttgaattttgagtacttgaaaagccaaatgtttaggactccattgtgaagtatcagagtggcaaat |
924523 |
T |
|
| Q |
208 |
agcaacagctttaactctacttccatcagcaccttccaaaggcacagagtaaactttagttgcatctgttttgtgacagtaaaaaactg |
296 |
Q |
| |
|
|||||||||||||||| | |||||||| ||||||||| ||||| | ||||||||||||||||| | ||||||||| ||||| |||| |
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|
| T |
924522 |
agcaacagctttaactttggttccatcaacaccttccataggcaaatagtaaactttagttgcacgtagtttgtgacaataaaacactg |
924434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 79 - 324
Target Start/End: Complemental strand, 936874 - 936629
Alignment:
| Q |
79 |
ttacttggaaaaccaaacaacttgaccctgttgtaggatgtggcaaactggaaaagttccttgttgaactttgagcacttgaaaagccaaatgtttaggg |
178 |
Q |
| |
|
||||||||||| ||||||||| ||| |||| | |||| ||| |||||||||| |||||| ||||||| ||||||||||||||||||||||||||||| |
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|
| T |
936874 |
ttacttggaaacccaaacaacatgatcctgaggaaggaagtgacaaactggaacagttccaggttgaacattgagcacttgaaaagccaaatgtttagga |
936775 |
T |
|
| Q |
179 |
ctccattgtgaagtatcagagtggcaaatagcaacagctttaactctacttccatcagcaccttccaaaggcacagagtaaactttagttgcatctgttt |
278 |
Q |
| |
|
|||||||||||||||||| ||| || | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||| |
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|
| T |
936774 |
ttccattgtgaagtatcagtgtgacacacagcaacagctttaactctacttccatcaacaccttccaaaggcacagagtaaactttagttgaatcagttt |
936675 |
T |
|
| Q |
279 |
tgtgacagtaaaaaactgcataagggtaattccgtttgtggcacac |
324 |
Q |
| |
|
| ||||||||||||||||||||||||||| || |||||| ||||| |
|
|
| T |
936674 |
tatgacagtaaaaaactgcataagggtaactctctttgtgacacac |
936629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 9 - 300
Target Start/End: Complemental strand, 916670 - 916379
Alignment:
| Q |
9 |
gtattaagtatttttgaagtagcttctatatatatagtggttattattgaagaagatggaattggtgtttttacttggaaaaccaaacaacttgaccctg |
108 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||||| |||||||| | || ||||||||| ||||| || |||||||||| ||| ||||| || |
|
|
| T |
916670 |
gtattaaatatttttgaagtagcttctatatgtatagtggttactattgaaggatatagaattggtggttttattttgaaaaccaaataacatgaccatg |
916571 |
T |
|
| Q |
109 |
ttgtaggatgtggcaaactggaaaagttccttgttgaactttgagcacttgaaaagccaaatgtttagggctccattgtgaagtatcagagtggcaaata |
208 |
Q |
| |
|
|||||||| |||||||||||||| |||||| ||||||| ||||| || |||||||||||||| || || |||||||||||||||||| |||||||||| |
|
|
| T |
916570 |
ttgtaggaagtggcaaactggaacagttccaggttgaaccttgagtacatgaaaagccaaatgcttgggactccattgtgaagtatcattgtggcaaata |
916471 |
T |
|
| Q |
209 |
gcaacagctttaactctacttccatcagcaccttccaaaggcacagagtaaactttagttgcatctgttttgtgacagtaaaaaactgcata |
300 |
Q |
| |
|
||| ||| ||||||| | | |||||| |||||||| ||||| | |||||||||||||||| | ||||||||| ||||| |||||||| |
|
|
| T |
916470 |
gcagcagttttaactttggtaccatcaataccttccataggcaaatagtaaactttagttgcccgtaatttgtgacaataaaacactgcata |
916379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 74 - 327
Target Start/End: Original strand, 419479 - 419732
Alignment:
| Q |
74 |
tgtttttacttggaaaaccaaacaacttgaccctgttgtaggatgtggcaaactggaaaagttccttgttgaactttgagcacttgaaaagccaaatgtt |
173 |
Q |
| |
|
||||| |||||| || ||||||||| ||| ||| |||||| ||| |||||||||| ||| || ||||||||||||| |||||||| |||||||||| |
|
|
| T |
419479 |
tgtttctacttgcgaatccaaacaacatgatcctcaggtaggaggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgtt |
419578 |
T |
|
| Q |
174 |
tagggctccattgtgaagtatcagagtggcaaatagcaacagctttaactctacttccatcagcaccttccaaaggcacagagtaaactttagttgcatc |
273 |
Q |
| |
|
| ||| |||||| ||| ||||||| ||| || | ||||| |||||||||||| |||||||||||||| |||||||||||||||||| ||||||||| ||| |
|
|
| T |
419579 |
ttgggttccattctgatgtatcagtgtgacacacagcaatagctttaactctgcttccatcagcaccctccaaaggcacagagtaagctttagttgtatc |
419678 |
T |
|
| Q |
274 |
tgttttgtgacagtaaaaaactgcataagggtaattccgtttgtggcacacaac |
327 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||||| |||||||| |
|
|
| T |
419679 |
tgttttgtgacagtaaaacactgcataagggtaattctctttgtgacacacaac |
419732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 74 - 327
Target Start/End: Complemental strand, 975682 - 975429
Alignment:
| Q |
74 |
tgtttttacttggaaaaccaaacaacttgaccctgttgtaggatgtggcaaactggaaaagttccttgttgaactttgagcacttgaaaagccaaatgtt |
173 |
Q |
| |
|
||||| |||||| || ||||||||| ||| ||| |||||| ||| |||||||||| ||| || ||||||||||||| |||||||| |||||||||| |
|
|
| T |
975682 |
tgtttctacttgcgaatccaaacaacatgatcctcaggtaggaggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgtt |
975583 |
T |
|
| Q |
174 |
tagggctccattgtgaagtatcagagtggcaaatagcaacagctttaactctacttccatcagcaccttccaaaggcacagagtaaactttagttgcatc |
273 |
Q |
| |
|
| ||| |||||| ||| ||||||| ||| || | ||||| |||||||||||| |||||||||||||| |||||||||||||||||| ||||||||| ||| |
|
|
| T |
975582 |
ttgggttccattctgatgtatcagtgtgacacacagcaatagctttaactctgcttccatcagcaccctccaaaggcacagagtaagctttagttgtatc |
975483 |
T |
|
| Q |
274 |
tgttttgtgacagtaaaaaactgcataagggtaattccgtttgtggcacacaac |
327 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||||| |||||||| |
|
|
| T |
975482 |
tgttttgtgacagtaaaacactgcataagggtaattctctttgtgacacacaac |
975429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 76 - 326
Target Start/End: Complemental strand, 942797 - 942547
Alignment:
| Q |
76 |
tttttacttggaaaaccaaacaacttgaccctgttgtaggatgtggcaaactggaaaagttccttgttgaactttgagcacttgaaaagccaaatgttta |
175 |
Q |
| |
|
|||| ||||||||| ||||||||| ||| ||||| | |||||||| |||| |||| ||| ||| |||||||||| ||||| | |||||||||||||||| |
|
|
| T |
942797 |
ttttcacttggaaacccaaacaacatgatcctgtgggaggatgtgacaaataggaacagtccctggttgaactttaagcacataaaaagccaaatgttta |
942698 |
T |
|
| Q |
176 |
gggctccattgtgaagtatcagagtggcaaatagcaacagctttaactctacttccatcagcaccttccaaaggcacagagtaaactttagttgcatctg |
275 |
Q |
| |
|
|| |||||| ||| ||||||| ||| |||| ||||| || |||||| | |||||||| |||||||||| |||||||||||||||| ||||| ||| | |
|
|
| T |
942697 |
ggattccattctgatgtatcagtgtgacaaacagcaatagttttaaccatgtttccatcaacaccttccaatggcacagagtaaacttcagttgaatcag |
942598 |
T |
|
| Q |
276 |
ttttgtgacagtaaaaaactgcataagggtaattccgtttgtggcacacaa |
326 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
942597 |
ttttatgacagtaaaaaactgcataagggtaattctctttgtgacacacaa |
942547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 76 - 326
Target Start/End: Complemental strand, 949786 - 949536
Alignment:
| Q |
76 |
tttttacttggaaaaccaaacaacttgaccctgttgtaggatgtggcaaactggaaaagttccttgttgaactttgagcacttgaaaagccaaatgttta |
175 |
Q |
| |
|
|||| ||||||||| ||||||||| ||| ||||| | |||||||| |||| |||| ||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
949786 |
ttttcacttggaaacccaaacaacatgatcctgtgggaggatgtgacaaataggaacagtccctggttgaactttgagcacttgaaaagccaaatgttta |
949687 |
T |
|
| Q |
176 |
gggctccattgtgaagtatcagagtggcaaatagcaacagctttaactctacttccatcagcaccttccaaaggcacagagtaaactttagttgcatctg |
275 |
Q |
| |
|
||| |||||| ||| ||||||| ||| |||| | ||| || |||||| | |||||||| |||||||||| |||||||||||||||| |||| ||| | |
|
|
| T |
949686 |
gggttccattctgatgtatcagtgtgacaaacaacaatagttttaaccatgtttccatcaacaccttccaagggcacagagtaaacttcggttgaatcag |
949587 |
T |
|
| Q |
276 |
ttttgtgacagtaaaaaactgcataagggtaattccgtttgtggcacacaa |
326 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||| |||||| ||||||| |
|
|
| T |
949586 |
ttttatgacagtaaaaaactgtgtaagggtaattctctttgtgacacacaa |
949536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 76 - 326
Target Start/End: Complemental strand, 960758 - 960508
Alignment:
| Q |
76 |
tttttacttggaaaaccaaacaacttgaccctgttgtaggatgtggcaaactggaaaagttccttgttgaactttgagcacttgaaaagccaaatgttta |
175 |
Q |
| |
|
|||| ||||||||| ||||||||| ||| ||||| | |||||||| |||| |||| ||| ||| |||||||||| ||||| | |||||||||||||||| |
|
|
| T |
960758 |
ttttcacttggaaacccaaacaacatgatcctgtgggaggatgtgacaaataggaacagtccctggttgaactttaagcacataaaaagccaaatgttta |
960659 |
T |
|
| Q |
176 |
gggctccattgtgaagtatcagagtggcaaatagcaacagctttaactctacttccatcagcaccttccaaaggcacagagtaaactttagttgcatctg |
275 |
Q |
| |
|
|| |||||| ||| ||||||| ||| |||| ||||| || |||||| | |||||||| |||||||||| |||||||||||||||| ||||| ||| | |
|
|
| T |
960658 |
ggattccattctgatgtatcagtgtgacaaacagcaatagttttaaccatgtttccatcaacaccttccaatggcacagagtaaacttcagttgaatcag |
960559 |
T |
|
| Q |
276 |
ttttgtgacagtaaaaaactgcataagggtaattccgtttgtggcacacaa |
326 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
960558 |
ttttatgacagtaaaaaactgcataagggtaattctctttgtgacacacaa |
960508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 83 - 326
Target Start/End: Complemental strand, 972060 - 971817
Alignment:
| Q |
83 |
ttggaaaaccaaacaacttgaccctgttgtaggatgtggcaaactggaaaagttccttgttgaactttgagcacttgaaaagccaaatgtttagggctcc |
182 |
Q |
| |
|
||||||| ||||||||| ||| ||||| | |||||||| |||| |||| ||| ||| |||||||||| ||||| | |||||||||||||||||| ||| |
|
|
| T |
972060 |
ttggaaacccaaacaacatgatcctgtgggaggatgtgacaaataggaacagtccctggttgaactttaagcacataaaaagccaaatgtttaggattcc |
971961 |
T |
|
| Q |
183 |
attgtgaagtatcagagtggcaaatagcaacagctttaactctacttccatcagcaccttccaaaggcacagagtaaactttagttgcatctgttttgtg |
282 |
Q |
| |
|
||| ||| ||||||| ||| |||| ||||| || |||||| | |||||||| |||||||||| |||||||||||||||| ||||| ||| ||||| || |
|
|
| T |
971960 |
attctgatgtatcagtgtgacaaacagcaatagttttaaccatgtttccatcaacaccttccaatggcacagagtaaacttcagttgaatcagttttatg |
971861 |
T |
|
| Q |
283 |
acagtaaaaaactgcataagggtaattccgtttgtggcacacaa |
326 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
971860 |
acagtaaaaaactgcataagggtaattctctttgtgacacacaa |
971817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0312 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: scaffold0312
Description:
Target: scaffold0312; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 74 - 327
Target Start/End: Complemental strand, 11092 - 10839
Alignment:
| Q |
74 |
tgtttttacttggaaaaccaaacaacttgaccctgttgtaggatgtggcaaactggaaaagttccttgttgaactttgagcacttgaaaagccaaatgtt |
173 |
Q |
| |
|
||||| |||||| || ||||||||| ||| ||| |||||| ||| |||||||||| ||| || ||||||||||||| |||||||| |||||||||| |
|
|
| T |
11092 |
tgtttctacttgcgaatccaaacaacatgatcctcaggtaggaggtgacaaactggaacagtcccaggttgaactttgagtacttgaaatgccaaatgtt |
10993 |
T |
|
| Q |
174 |
tagggctccattgtgaagtatcagagtggcaaatagcaacagctttaactctacttccatcagcaccttccaaaggcacagagtaaactttagttgcatc |
273 |
Q |
| |
|
| ||| |||||| ||| ||||||| ||| || | ||||| |||||||||||| |||||||||||||| |||||||||||||||||| ||||||||| ||| |
|
|
| T |
10992 |
ttgggttccattctgatgtatcagtgtgacacacagcaatagctttaactctgcttccatcagcaccctccaaaggcacagagtaagctttagttgtatc |
10893 |
T |
|
| Q |
274 |
tgttttgtgacagtaaaaaactgcataagggtaattccgtttgtggcacacaac |
327 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||||| |||||||| |
|
|
| T |
10892 |
tgttttgtgacagtaaaacactgcataagggtaattctctttgtgacacacaac |
10839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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