View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4752_high_17 (Length: 321)
Name: NF4752_high_17
Description: NF4752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4752_high_17 |
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Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 11 - 307
Target Start/End: Original strand, 10069023 - 10069319
Alignment:
| Q |
11 |
catcatcatggccactacaaccatagcaaaaaattgcttcatcttcaatgcttccatttctgaaaattttcttggaaattttgtttcttttcttgcgagg |
110 |
Q |
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| T |
10069023 |
catcatcatggccactaccagcatagcaaaaaattgcttcatcttcaatgcttccatttctgaaaattttcttggaaattttgtttcttttcttgcaagg |
10069122 |
T |
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| Q |
111 |
aaagaaatcgagaaaagtggttaggcaaagacaaggataggtagtggatgaatattaagtgtatgtctatgtgactttatatagttgcaatagaggatga |
210 |
Q |
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| T |
10069123 |
aaagaaatcgagagaagtggttaggcaaagacaaggataggtagtggatgaatattaagtgtatgtctatgcgactttatatagttgcaatagaggatga |
10069222 |
T |
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| Q |
211 |
aaataaaataaagcaaatttttgggattatttaatttctgatggccagcctgcctcaacttattgttttcgaggatttcaaggatgatgacaattgt |
307 |
Q |
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| T |
10069223 |
aaataaaataaagcaaatttttgggattatttaatttttgatggccagcctgcctcaacttattgttttcgaggatttcaaggatgatgacaattgt |
10069319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 11 - 197
Target Start/End: Original strand, 10106781 - 10106970
Alignment:
| Q |
11 |
catcatcatggccactacaaccatagcaaaaaattgcttcatcttcaatgcttccatttctg---aaaattttcttggaaattttgtttcttttcttgcg |
107 |
Q |
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|||||||||| ||||||| ||||||||||||| ||| |||||||||||||| ||||||||| |||| |||||||||||| ||||||||||| | |
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| T |
10106781 |
catcatcatgaccactaccaccatagcaaaaatttgattcatcttcaatgcctccatttctataaaaaaaaaacttggaaattttctttcttttcttttg |
10106880 |
T |
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| Q |
108 |
aggaaagaaatcgagaaaagtggttaggcaaagacaaggataggtagtggatgaatattaagtgtatgtctatgtgactttatatagttg |
197 |
Q |
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| T |
10106881 |
aggaaagaaagtgagaggaatgggtaggcaaatacaaggataggtagtggatgaatattaagtgtatgtctatgtgactttatatagttg |
10106970 |
T |
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