View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4752_high_28 (Length: 247)
Name: NF4752_high_28
Description: NF4752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4752_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 29380925 - 29380680
Alignment:
| Q |
1 |
atgattcatgtcatggaattaatggagcccttccattgcggcatcttgttaaccagcctgcaattcatgggcaactctaccatgtatcacacaca----a |
96 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
29380925 |
atgattcatgtcatggaattaatggagcccttccattgcggcatcttgttaaccagcctgcaattcatgggcaactctaccatgtatcacacacacacaa |
29380826 |
T |
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| Q |
97 |
ccttctatttatttttgctactctatggctttgaatcttagggaaatttaattattttgttagtatgatacaaggtgaatttcgcaatattcccaataaa |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29380825 |
ccttctatttatttttgctactctatggctttgaatcttagggaaatttaattattttgttagtatgatacaaggtgaatgtcgcaatattcccaataaa |
29380726 |
T |
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| Q |
197 |
taaaacaattctaaaattgttttgccgcctggcatttatctctgct |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29380725 |
taaaacaattctaaaattgttttgccgcctggcatttatctctgct |
29380680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 22581 - 22330
Alignment:
| Q |
1 |
atgattcatgtcatggaattaatggagcccttccattgcggcatcttgttaaccagcctgcaattcatgggcaactctaccatgtatcacacaca--acc |
98 |
Q |
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||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
22581 |
atgattcatgtggtggaattgatggagcccttccattgcggcatcttgttaaccaacctgcaattcatgggcaaatctaccatgtatcacacacacaacc |
22482 |
T |
|
| Q |
99 |
ttctatttatttttgctactctatggctttgaatcttagggaaatttaattattttgttagtatgatacaaggtgaatttcgcaatattcccaataaata |
198 |
Q |
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|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
22481 |
ttctatttatttttgctactatatggctttgaatcttggggaaatttaattattttgttagtatgatacaaggtgaatgtcgcaatattcccaataaata |
22382 |
T |
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| Q |
199 |
aaacaa----------ttctaaaattgttttgccgcctggcatttatctctg |
240 |
Q |
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|||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
22381 |
aaacaattccaaacagttctaaaattgttttgccacctggcatttatctctg |
22330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 21345850 - 21345602
Alignment:
| Q |
1 |
atgattcatgtcatggaattaatggagcccttccattgcggcatcttgttaaccagcctgcaattcatgggcaactctaccatgtatcacacaca--acc |
98 |
Q |
| |
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||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||| |
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| T |
21345850 |
atgattcatgtggtggaattgatggtgcccttccattgcggcatcttgttaaccagcctgcaattcacgggcaaatctaccatgtatcacacacacaacc |
21345751 |
T |
|
| Q |
99 |
ttctatttatttttgctactctatggctttgaatcttagggaaatttaattattttgttagtatgatacaaggtgaatttcgcaatattcccaataaata |
198 |
Q |
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|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
21345750 |
ttctatttatttttgctactatatggctttgaatcttggggaaatttaattattttgatagtatgatacaaggtgaatgtcgcaatattcccaataaatt |
21345651 |
T |
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| Q |
199 |
aaacaa----------ttctaaaattgttttgccgcctggcatttatct |
237 |
Q |
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|||||| |||||||||||||||||| |||||||||||||| |
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| T |
21345650 |
aaacaattccaaacagttctaaaattgttttgccacctggcatttatct |
21345602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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