View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4752_high_29 (Length: 244)
Name: NF4752_high_29
Description: NF4752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4752_high_29 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 7 - 232
Target Start/End: Original strand, 15767278 - 15767503
Alignment:
| Q |
7 |
taagaatgaatggaaattagtatctcttcaatgtcccgaatgatactttggttatttgatgtgaattttttccggttcttttctaaccctaagatggagt |
106 |
Q |
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| T |
15767278 |
taagaatgtatggaaattagtatctcttcaatgtcccgaatgatactttggttatttgatgtgaattttttccggttcttttctaaccctaagatggagt |
15767377 |
T |
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| Q |
107 |
agaagcaatttcaaacaaagaacgtgataaggagacttaccctataatgtcgggttacaacgattctacaaattaattcgtcaaaagctataagacatca |
206 |
Q |
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| T |
15767378 |
agaagcaatttcaaacaaagaacgtgataaggagacttaccctataatgttgagttacaacgattctacaaattaattcgtcaaaagctataagatatca |
15767477 |
T |
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| Q |
207 |
aaccatattttaccatgaaaaagttg |
232 |
Q |
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| T |
15767478 |
aaccatattttaccatgaaaaagttg |
15767503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 5 - 215
Target Start/End: Complemental strand, 46631665 - 46631457
Alignment:
| Q |
5 |
aataagaatgaatggaaattagtatctcttcaatgtcccgaatgat-actttggttatttgatgtgaattttttccggttcttttctaaccctaagatgg |
103 |
Q |
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| T |
46631665 |
aataagaatggatggaaattattatctcctcaatgtctcgaatgattactttggttatttgatgtgaattttttctg---cttttctaactcta-gatgg |
46631570 |
T |
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| Q |
104 |
agtagaagcaatttcaa-acaaagaacgtgataaggagacttaccctataatgtcgggttacaacgattctacaaattaattcgtcaaaagctataagac |
202 |
Q |
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| T |
46631569 |
agtagatgcgatttcattacaaggaacatgaagaggagacttaccctttaatgtcgggttacaatgattctaccaattatttcattaatagctataagat |
46631470 |
T |
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| Q |
203 |
atcaaaccatatt |
215 |
Q |
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| T |
46631469 |
atcaaaccatatt |
46631457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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