View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4752_high_3 (Length: 660)
Name: NF4752_high_3
Description: NF4752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4752_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 286 - 648
Target Start/End: Complemental strand, 2214877 - 2214531
Alignment:
| Q |
286 |
tcaaggaaaaattggcaggcacgtgcaatcttcatgaaagctaacattgaactttcatcttcaatccataccaaacctctatcttttccatgcaatcgtc |
385 |
Q |
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||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||| |||| |||||||| |
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| T |
2214877 |
tcaagaaaaaattggcaggcacgtgcaatcttcatgaaagataacattgaactttcatcttgaatccataccaaacctttatcttcgccattcaatcgtc |
2214778 |
T |
|
| Q |
386 |
tattaatttaccagaaaccctatcatcttcaatccataccaaacttaaaccaatacctcctcctcctcccaataaacatccaattagatcagagatttgt |
485 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2214777 |
tattaatttaccagaaacactatcatcttcaatccataccaaacttaaaccaatacctcctc---ctcccaataaacatccaattagatcagagatttgt |
2214681 |
T |
|
| Q |
486 |
tctccttctcaatcattttaaagaaagttaatcagtactcactttttacactcaattttgaaacgcggttttggtcagatcttattgaatcacgtttctg |
585 |
Q |
| |
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|||||||||||||||||||||| ||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2214680 |
tctccttctcaatcattttaaataaagttaattagt-------------acttaattttgaaacgcggttttggtcagatcttattgaatcacgtttctg |
2214594 |
T |
|
| Q |
586 |
agaatcgcgttcgtggagatttaacacgatgtgaaggatttgaagtgattttgtgaagatggt |
648 |
Q |
| |
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||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2214593 |
agaatcgcgttcgtggatatttaacacggtgtgaaggatttgaagtgattttgtgaagatggt |
2214531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 286 - 612
Target Start/End: Complemental strand, 22813123 - 22812810
Alignment:
| Q |
286 |
tcaaggaaaaattggcaggcacgtgcaatcttcatgaaagctaacattgaactttcatcttcaatccataccaaacctctatcttttccatgcaatcgtc |
385 |
Q |
| |
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||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||| |||| |||| ||| |
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| T |
22813123 |
tcaagaaaaaattgacaggcacgtgcaatcttcatgaaaggtaacattgaactttcatcttcaatccataccaaacatttatcttcgccattcaattgtc |
22813024 |
T |
|
| Q |
386 |
tattaatttaccagaaaccctatcatcttcaatccataccaaacttaaaccaatacctcctcctcctcccaataaacatccaattagatcagagatttgt |
485 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |
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| T |
22813023 |
tattaatttaccagaaaccctatcatcttcaatccataccaaacttaaaccaatacctcctccccctcccaataaacatccaattagatcagagatttat |
22812924 |
T |
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| Q |
486 |
tctccttctcaatcattttaaagaaagttaatcagtactcactttttacactcaattttgaaacgcggttttggtcagatcttattgaatcacgtttctg |
585 |
Q |
| |
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|||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
22812923 |
tctccttctcaatcattttaaataaagttaattagt-------------actcaattttgaaacgcggttttggttagatcttattgaatcacgtttctg |
22812837 |
T |
|
| Q |
586 |
agaatcgcgttcgtggagatttaacac |
612 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
22812836 |
agaatcgcgttcgtggagatttaacac |
22812810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 292 - 610
Target Start/End: Original strand, 39688557 - 39688864
Alignment:
| Q |
292 |
aaaaattggcaggcacgtgcaatcttcatgaaagctaacattgaactttc--atcttcaatccataccaaacctctatcttttccatgcaatcgtctatt |
389 |
Q |
| |
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|||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| | |||||| |||| |||| ||||||| |
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| T |
39688557 |
aaaaattgacaggcacgtgcaatcttcatgaaaggtaacattgaactttctcatcttcaatccataccaaacatttatcttcgccattcaattgtctatt |
39688656 |
T |
|
| Q |
390 |
aatttaccagaaaccctatcatcttcaatccataccaaacttaaaccaatacctcctcctcctcccaataaacatccaattagatcagagatttgttctc |
489 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
39688657 |
aatttaccagaaaccctatcatcttcaatccgtaccaaacttaaaccaatacctcctcctcatcccaataaacatccaattagatcagagatttattctc |
39688756 |
T |
|
| Q |
490 |
cttctcaatcattttaaagaaagttaatcagtactcactttttacactcaattttgaaacgcggttttggtcagatcttattgaatcacgtttctgagaa |
589 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39688757 |
cttctcaatcattttaaataaagttaattagt-------------actcaattttgaaacgcggttttggtcagatcttattgaatcacgtttctgagaa |
39688843 |
T |
|
| Q |
590 |
tcgcgttcgtggagatttaac |
610 |
Q |
| |
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||||||||||||||||||||| |
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| T |
39688844 |
tcgcgttcgtggagatttaac |
39688864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 108; Significance: 7e-54; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 454 - 648
Target Start/End: Complemental strand, 21843975 - 21843766
Alignment:
| Q |
454 |
ccaataaacatccaattagatcagagatttgttctccttctcaatcattttaaagaaagttaatcagtactcactttttacactcaattttgaaacgcgg |
553 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
21843975 |
ccaataaacacccaattagatcagagatttgttctccttctcaatcattttacataaagttaattagtactcaaattttacactcaattttgaaacgcgg |
21843876 |
T |
|
| Q |
554 |
ttttggtcagatcttattgaa---------------tcacgtttctgagaatcgcgttcgtggagatttaacacgatgtgaaggatttgaagtgattttg |
638 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||| | ||||||||||||| ||| |||| |
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| T |
21843875 |
ttttggtcagatcttattgaatcacatttatgagaatcacgtttctgagaatcgcgttcatggcgatttaacacggtatgaaggatttgaaatgagtttg |
21843776 |
T |
|
| Q |
639 |
tgaagatggt |
648 |
Q |
| |
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||||| |||| |
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|
| T |
21843775 |
tgaaggtggt |
21843766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 286 - 438
Target Start/End: Complemental strand, 21844194 - 21844043
Alignment:
| Q |
286 |
tcaaggaaaaattggcaggcacgtgcaatcttcatgaaagctaacattgaactttcatcttcaatccataccaaacctctatcttttccatgcaatcgtc |
385 |
Q |
| |
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||||||| |||||||||||||| || |||||||||||||| |||||||||||||||| |||||||||||||||||| | |||||| | ||| ||||| || |
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| T |
21844194 |
tcaaggacaaattggcaggcacatg-aatcttcatgaaaggtaacattgaactttcaccttcaatccataccaaacatttatcttcttcattcaatcttc |
21844096 |
T |
|
| Q |
386 |
tattaatttaccagaaaccctatcatcttcaatccataccaaacttaaaccaa |
438 |
Q |
| |
|
|||||||| ||| ||||||||| ||||| |||||||||||||| ||||||| |
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|
| T |
21844095 |
cattaattttccaaaaaccctattatcttaaatccataccaaacaaaaaccaa |
21844043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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