View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4752_high_31 (Length: 241)

Name: NF4752_high_31
Description: NF4752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4752_high_31
NF4752_high_31
[»] chr2 (4 HSPs)
chr2 (20-225)||(41483846-41484051)
chr2 (30-225)||(40751052-40751247)
chr2 (23-225)||(41476803-41477005)
chr2 (30-225)||(41469791-41469986)
[»] chr4 (3 HSPs)
chr4 (89-225)||(16408850-16408986)
chr4 (57-225)||(52471933-52472101)
chr4 (51-225)||(16413236-16413410)


Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 20 - 225
Target Start/End: Complemental strand, 41484051 - 41483846
Alignment:
Q  20 catgagagggttaaaaggagagaataattcatttagcattgctatcataaattaaaagagccgaaatacattacatgttgcttctcaaaatatagcttgg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41484051 catgagagggttaaaaggagagaataattcatttagcattgctatcataaattaaaagagccgaaatacattacatgttgcttctcaaaatatagcttgg 41483952  T
Q  120 ctttctcattgtgattatctacttcacgcttctgcagatccttctcacgggaaataagctcgttcctccgagcttccagttccagcctggctttttcatg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41483951 ctttctcattgtgattatctacttcacgcttctgcagatccttctcacgggaaataagctcgttcctccgagcttccagttccagcctggctttttcatg 41483852  T
Q  220 atcctt 225  Q
    ||||||    
T  41483851 atcctt 41483846  T

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Target: chr2; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 30 - 225
Target Start/End: Complemental strand, 40751247 - 40751052
Alignment:
Q  30 ttaaaaggagagaataattcatttagcattgctatcataaattaaaagagccgaaatacattacatgttgcttctcaaaatatagcttggctttctcatt 129  Q
    ||||||||||||||| |||||| ||||||||||| |||||||| |||||||| |||||||||||||||| |||||||||||||||||||| | |||||||    
T  40751247 ttaaaaggagagaattattcatctagcattgctaccataaattcaaagagccaaaatacattacatgtttcttctcaaaatatagcttggttctctcatt 40751148  T
Q  130 gtgattatctacttcacgcttctgcagatccttctcacgggaaataagctcgttcctccgagcttccagttccagcctggctttttcatgatcctt 225  Q
    |||||||||| ||| ||||||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||||||| |||||||||||||||    
T  40751147 gtgattatctgcttgacgcttctgtagatccttctcacgggacataagttcattcctccgagcttccagttccagcctggatttttcatgatcctt 40751052  T

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Target: chr2; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 23 - 225
Target Start/End: Complemental strand, 41477005 - 41476803
Alignment:
Q  23 gagagggttaaaaggagagaataattcatttagcattgctatcataaattaaaagagccgaaatacattacatgttgcttctcaaaatatagcttggctt 122  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||| | |||||||| ||||||||||||| || |||||||| ||||||||||  |     
T  41477005 gagagggttaaaaggagagaattattcatttagcattgctaccataaactcaaagagccaaaatacattacatttttcttctcaagatatagcttgtttc 41476906  T
Q  123 tctcattgtgattatctacttcacgcttctgcagatccttctcacgggaaataagctcgttcctccgagcttccagttccagcctggctttttcatgatc 222  Q
    |||||||| |||||||| ||| |||||||||||||||||| ||||||||  |||| || |||||||||| |||||||||| |||| ||| ||||||||||    
T  41476905 tctcattgagattatctgcttgacgcttctgcagatccttttcacgggacttaagttcattcctccgagtttccagttcctgcctagctatttcatgatc 41476806  T
Q  223 ctt 225  Q
    |||    
T  41476805 ctt 41476803  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 30 - 225
Target Start/End: Complemental strand, 41469986 - 41469791
Alignment:
Q  30 ttaaaaggagagaataattcatttagcattgctatcataaattaaaagagccgaaatacattacatgttgcttctcaaaatatagcttggctttctcatt 129  Q
    |||||| |||| ||| | |||||||||||||||| |||||||   ||||||  ||| | ||||||||   | ||| ||||||| ||||   | ||||  |    
T  41469986 ttaaaaagagataattactcatttagcattgctaccataaatccgaagagctaaaagaaattacatggcccgtctgaaaatattgcttatttctctcgat 41469887  T
Q  130 gtgattatctacttcacgcttctgcagatccttctcacgggaaataagctcgttcctccgagcttccagttccagcctggctttttcatgatcctt 225  Q
    || ||||||| ||| || ||||||||||||||| ||||| || |||||||| |||||||||||||| ||||  ||  |||||||||||| ||||||    
T  41469886 gtaattatcttcttgacccttctgcagatccttttcacgtgacataagctcattcctccgagcttctagttgaagaatggctttttcataatcctt 41469791  T

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Target: chr4 (Bit Score: 77; Significance: 7e-36; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 89 - 225
Target Start/End: Original strand, 16408850 - 16408986
Alignment:
Q  89 attacatgttgcttctcaaaatatagcttggctttctcattgtgattatctacttcacgcttctgcagatccttctcacgggaaataagctcgttcctcc 188  Q
    |||||||||| |||||||| |||||||||   | ||||||||||||||||| ||| |||||||||||||||||| |||||||| |||||||| ||  |||    
T  16408850 attacatgtttcttctcaagatatagcttatttctctcattgtgattatctgcttgacgcttctgcagatccttttcacgggacataagctcatttttcc 16408949  T
Q  189 gagcttccagttccagcctggctttttcatgatcctt 225  Q
     |||||| |||||||||||||||||||||||||||||    
T  16408950 aagcttctagttccagcctggctttttcatgatcctt 16408986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 57 - 225
Target Start/End: Complemental strand, 52472101 - 52471933
Alignment:
Q  57 attgctatcataaattaaaagagccgaaatacattacatgttgcttctcaaaatatagcttggctttctcattgtgattatctacttcacgcttctgcag 156  Q
    ||||||| |||||| |  ||||||| ||||| ||||| |||| | |||||| |||||||||     ||||||||| ||||||||||| ||||||||||||    
T  52472101 attgctaccataaaatcgaagagccaaaataaattacctgtttcctctcaagatatagcttattgctctcattgtcattatctacttgacgcttctgcag 52472002  T
Q  157 atccttctcacgggaaataagctcgttcctccgagcttccagttccagcctggctttttcatgatcctt 225  Q
    |||| | |||||||| ||||| || ||||||| |||||||||||||| | |||||||||||||||||||    
T  52472001 atccatttcacgggacataagttcattcctcctagcttccagttccaacatggctttttcatgatcctt 52471933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 51 - 225
Target Start/End: Original strand, 16413236 - 16413410
Alignment:
Q  51 tttagcattgctatcataaattaaaagagccgaaatacattacatgttgcttctcaaaatatagcttggctttctcattgtgattatctacttcacgctt 150  Q
    ||||||||||||| |||||||| |||||||  ||||| ||||||||||   | | ||||||||||||   | || || ||||||||||| |||  |||||    
T  16413236 tttagcattgctaccataaattcaaagagctaaaataaattacatgttttgtttgaaaatatagcttatttctcacaatgtgattatcttcttgtcgctt 16413335  T
Q  151 ctgcagatccttctcacgggaaataagctcgttcctccgagcttccagttccagcctggctttttcatgatcctt 225  Q
    |||||||||||| || ||  | ||||| || |||||| | ||||||||||||||  |||||||||| ||||||||    
T  16413336 ctgcagatccttttctcgtaacataagttcattcctcagcgcttccagttccagtatggctttttcttgatcctt 16413410  T

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