View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4752_high_35 (Length: 212)
Name: NF4752_high_35
Description: NF4752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4752_high_35 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 12 - 195
Target Start/End: Original strand, 27766189 - 27766372
Alignment:
| Q |
12 |
gacatcatcgcccttaccgacgcccaaaccggtgaatccctaaccttccgccagctcgaaaaggaagtctcctacctctcccgctcattgctcagtctcg |
111 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27766189 |
gacaccatcgcccttaccgacgcccaaaccggtgaattcctaaccttccgccagctcgaaaaggaagtctcctacctctcccgctcattgctcagtctcg |
27766288 |
T |
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| Q |
112 |
gaatcaaacgaggtgacgtcgttatgctgtatgcaccaaactccatacgtttccccgtctgcttcctcgctgtcgccgccatag |
195 |
Q |
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||||||||||||| || ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27766289 |
gaatcaaacgaggcgatgtcgttatgctatacgcaccaaactccatacgtttccccgtctgcttcctcgctgtcgccgccatag |
27766372 |
T |
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