View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4752_high_36 (Length: 202)

Name: NF4752_high_36
Description: NF4752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4752_high_36
NF4752_high_36
[»] chr1 (17 HSPs)
chr1 (1-192)||(46768396-46768587)
chr1 (45-176)||(34775136-34775266)
chr1 (5-171)||(32882583-32882756)
chr1 (45-143)||(10785180-10785278)
chr1 (40-189)||(11439694-11439840)
chr1 (43-153)||(32863255-32863365)
chr1 (52-145)||(6582968-6583061)
chr1 (1-154)||(16148988-16149149)
chr1 (85-176)||(27102488-27102576)
chr1 (42-100)||(16577521-16577579)
chr1 (42-151)||(31290732-31290839)
chr1 (114-192)||(9313011-9313088)
chr1 (41-147)||(52278547-52278648)
chr1 (114-191)||(4431008-4431084)
chr1 (50-152)||(46603632-46603732)
chr1 (123-171)||(42374526-42374573)
chr1 (112-151)||(49820486-49820526)
[»] chr5 (19 HSPs)
chr5 (6-192)||(26045634-26045827)
chr5 (48-171)||(30097600-30097722)
chr5 (55-185)||(26405226-26405354)
chr5 (61-183)||(13953928-13954049)
chr5 (48-144)||(7195019-7195114)
chr5 (43-183)||(14302124-14302262)
chr5 (42-192)||(10174942-10175089)
chr5 (42-184)||(33109881-33110017)
chr5 (43-192)||(8297734-8297880)
chr5 (40-184)||(7682813-7682955)
chr5 (85-192)||(25992307-25992411)
chr5 (48-127)||(21398054-21398133)
chr5 (57-195)||(5187219-5187355)
chr5 (47-153)||(4914208-4914315)
chr5 (65-135)||(7403669-7403737)
chr5 (121-170)||(31742504-31742552)
chr5 (85-152)||(37108104-37108170)
chr5 (109-171)||(24071953-24072014)
chr5 (114-192)||(33258560-33258637)
[»] chr8 (7 HSPs)
chr8 (1-191)||(17656408-17656605)
chr8 (42-182)||(10248246-10248386)
chr8 (43-170)||(8862314-8862441)
chr8 (1-191)||(12197747-12197943)
chr8 (1-191)||(12442175-12442371)
chr8 (47-144)||(2273769-2273860)
chr8 (42-126)||(43312375-43312458)
[»] chr2 (14 HSPs)
chr2 (43-192)||(7696224-7696371)
chr2 (1-192)||(37770324-37770509)
chr2 (42-171)||(4975006-4975134)
chr2 (42-171)||(4992914-4993042)
chr2 (91-192)||(13337561-13337660)
chr2 (45-152)||(41113450-41113554)
chr2 (42-192)||(34230464-34230610)
chr2 (44-105)||(12343081-12343142)
chr2 (45-152)||(10173289-10173396)
chr2 (55-192)||(29997220-29997355)
chr2 (95-192)||(41086475-41086570)
chr2 (107-171)||(22884806-22884869)
chr2 (107-192)||(4472269-4472353)
chr2 (44-100)||(27879913-27879970)
[»] chr4 (19 HSPs)
chr4 (43-184)||(49747790-49747930)
chr4 (48-192)||(38636905-38637047)
chr4 (48-184)||(41117647-41117781)
chr4 (49-192)||(16832691-16832831)
chr4 (49-133)||(53823151-53823232)
chr4 (46-147)||(19311081-19311181)
chr4 (1-153)||(39420745-39420904)
chr4 (49-110)||(25753442-25753503)
chr4 (42-126)||(52009101-52009184)
chr4 (112-192)||(28967206-28967285)
chr4 (120-190)||(48098645-48098714)
chr4 (67-152)||(2061542-2061627)
chr4 (42-115)||(22810907-22810980)
chr4 (42-99)||(49528333-49528390)
chr4 (134-191)||(52009178-52009234)
chr4 (119-191)||(42719494-42719565)
chr4 (42-141)||(19814939-19815041)
chr4 (2-38)||(20464804-20464840)
chr4 (1-41)||(30964650-30964690)
[»] scaffold0050 (1 HSPs)
scaffold0050 (50-192)||(36976-37117)
[»] chr3 (20 HSPs)
chr3 (43-192)||(4171006-4171154)
chr3 (52-184)||(50518768-50518898)
chr3 (50-192)||(14194200-14194340)
chr3 (50-192)||(25647953-25648093)
chr3 (42-187)||(33143628-33143770)
chr3 (46-142)||(48893073-48893168)
chr3 (2-147)||(41039379-41039523)
chr3 (64-189)||(14280223-14280345)
chr3 (53-114)||(27399217-27399278)
chr3 (85-154)||(28937430-28937497)
chr3 (114-170)||(14893263-14893318)
chr3 (45-79)||(46358189-46358223)
chr3 (42-115)||(37123643-37123716)
chr3 (48-146)||(7105109-7105209)
chr3 (63-146)||(12086524-12086607)
chr3 (44-75)||(32010025-32010056)
chr3 (119-182)||(37123708-37123770)
chr3 (54-114)||(823184-823244)
chr3 (113-153)||(25594217-25594257)
chr3 (42-114)||(25594296-25594367)
[»] chr7 (19 HSPs)
chr7 (46-140)||(6492852-6492946)
chr7 (49-140)||(24324520-24324610)
chr7 (42-185)||(16828778-16828919)
chr7 (42-185)||(16954751-16954891)
chr7 (65-192)||(42532930-42533055)
chr7 (45-154)||(3478613-3478722)
chr7 (49-192)||(33719235-33719375)
chr7 (50-114)||(28534276-28534340)
chr7 (57-154)||(1321072-1321167)
chr7 (42-143)||(6716455-6716556)
chr7 (120-192)||(36674809-36674880)
chr7 (42-105)||(23983466-23983529)
chr7 (50-103)||(22567888-22567941)
chr7 (134-192)||(6726090-6726147)
chr7 (126-192)||(28534175-28534240)
chr7 (55-105)||(31409757-31409807)
chr7 (61-114)||(40292795-40292848)
chr7 (40-93)||(43235614-43235667)
chr7 (1-41)||(3867329-3867369)
[»] chr6 (7 HSPs)
chr6 (49-192)||(15120273-15120415)
chr6 (87-192)||(20701468-20701570)
chr6 (65-189)||(6860317-6860440)
chr6 (47-106)||(32935098-32935157)
chr6 (114-192)||(3880283-3880360)
chr6 (50-103)||(17278260-17278313)
chr6 (109-153)||(17278171-17278215)
[»] scaffold1384 (1 HSPs)
scaffold1384 (42-167)||(1347-1475)
[»] scaffold0063 (1 HSPs)
scaffold0063 (43-167)||(58391-58513)


Alignment Details
Target: chr1 (Bit Score: 176; Significance: 5e-95; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 46768396 - 46768587
Alignment:
Q  1 ctttgggggtgagtagtgatgatgggcggtgttggatatcggtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttg 100  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  46768396 ctttgggggtgagtagtgacgatgggcagtgttggatatcggtggtcgttttcgtgaaggagtctgttttaggtggtgacgtgaattttggtgggtgttg 46768495  T
Q  101 tcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctctg 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  46768496 tcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgtatgctcaatttcaccaatctctg 46768587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 45 - 176
Target Start/End: Original strand, 34775136 - 34775266
Alignment:
Q  45 gtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgc 144  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||   ||| ||||||| ||||||||||||||||||||||||    
T  34775136 gtcgttttcgtgaaggagtctgttttaggtgatgacgtgtattttggtgggtgttgtcctcattggtattttttaaggtgtttattttcgggtgttccgc 34775235  T
Q  145 ctacatacgggcgccttttgtttgtatgctca 176  Q
    ||| |||| ||||||||| |||||||| ||||    
T  34775236 ctatatac-ggcgcctttagtttgtattctca 34775266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 5 - 171
Target Start/End: Original strand, 32882583 - 32882756
Alignment:
Q  5 gggggtgagtagtgatgatgggcggtgttggatatcg--------gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggt 96  Q
    ||||||||||||||| |||||| ||||||||||||||        ||| ||||||||||||||||||| |||||||| | ||| ||  ||||||||||||    
T  32882583 gggggtgagtagtgacgatgggtggtgttggatatcgtgtttacagtgctcgttttcgtgaaggagtcagttttaggcggtgatgtatattttggtgggt 32882682  T
Q  97 gttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgtat 171  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||| ||||||||| ||||||||    
T  32882683 gttgtcctcgggggtgtcttttagggtgtttattttcgggtgttctgcctatatac-ggcgcctttagtttgtat 32882756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 45 - 143
Target Start/End: Complemental strand, 10785278 - 10785180
Alignment:
Q  45 gtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccg 143  Q
    ||||||||||||||||||||||||||| ||||| || || |||||| ||||||||||||||  |||||||||||| ||||||||| || ||||||||||    
T  10785278 gtcgttttcgtgaaggagtctgttttaagtgataacatgtattttgatgggtgttgtcctcaagggtgttttttaaggtgtttatatttgggtgttccg 10785180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 40 - 189
Target Start/End: Complemental strand, 11439840 - 11439694
Alignment:
Q  40 cggtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgt 139  Q
    ||||||| | |||||||||||  ||||||||||||| ||||||| |||||||||| ||||||| || |||  |  ||||||||||||||||||||| |||    
T  11439840 cggtggttgctttcgtgaagggatctgttttaggtggtgacgtgtattttggtggatgttgtcttcaggg--ggattttagggtgtttattttcggatgt 11439743  T
Q  140 tccgcctacatacgggcgccttttgtttgtatgctcaatttcaccgatct 189  Q
    |||| ||| |||  | |||||||||||||||| |||| ||||||||||||    
T  11439742 tccgtctatata-tgtcgccttttgtttgtattctcattttcaccgatct 11439694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 43 - 153
Target Start/End: Complemental strand, 32863365 - 32863255
Alignment:
Q  43 tggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttcc 142  Q
    |||||||||||||| |||| ||||||||||| | ||||||| || ||||||||||||||||||  ||||||||||   ||||||||||||| ||||||||    
T  32863365 tggtcgttttcgtggaggattctgttttaggcggtgacgtgtatgttggtgggtgttgtcctcttgggtgtttttcttggtgtttattttcaggtgttcc 32863266  T
Q  143 gcctacatacg 153  Q
    ||||| |||||    
T  32863265 gcctatatacg 32863255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 52 - 145
Target Start/End: Complemental strand, 6583061 - 6582968
Alignment:
Q  52 tcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcc 145  Q
    ||||| |||||||||||||||||| ||||||| ||||||||||||||| || ||  | |||||||||| |||||||||||||||||||||||||    
T  6583061 tcgtgtaggagtctgttttaggtggtgacgtgtattttggtgggtgttatcatcatgagtgttttttatggtgtttattttcgggtgttccgcc 6582968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 16148988 - 16149149
Alignment:
Q  1 ctttgggggtgagtagtgatgatgggcggtgttggatatcg-------gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtg 93  Q
    ||||||||||||||||||| |||||| | | ||||||||||       || ||||||| | |||||| |||||||||||||| ||||||| ||||| | |    
T  16148988 ctttgggggtgagtagtgacgatgggtgcttttggatatcgtttttcagtagtcgtttacatgaaggtgtctgttttaggtggtgacgtgtattttagcg 16149087  T
Q  94 gg-tgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacatacgg 154  Q
    || | ||||||||  || ||| |||||||||||||||||||| |||||||||||| ||||||    
T  16149088 ggcttttgtcctcaaggttgtcttttagggtgtttattttcgcgtgttccgcctatatacgg 16149149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 85 - 176
Target Start/End: Original strand, 27102488 - 27102576
Alignment:
Q  85 attttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgtatgctca 176  Q
    |||||||||||||||||||||   |||| |||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||| ||||    
T  27102488 attttggtgggtgttgtcctc-atggtg-tttttagggtgtttattttcgggtgttccgcctatatac-ggcaccttttgtttgtattctca 27102576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 100
Target Start/End: Original strand, 16577521 - 16577579
Alignment:
Q  42 gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttg 100  Q
    ||||||||||||||||| |||||||||||||||||||| ||  ||||||||||||||||    
T  16577521 gtggtcgttttcgtgaaagagtctgttttaggtgatgatgtttattttggtgggtgttg 16577579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 42 - 151
Target Start/End: Complemental strand, 31290839 - 31290732
Alignment:
Q  42 gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttc 141  Q
    ||||||||||||| ||||||||||| |||||||| ||| ||| || | |  |||  |||||||| ||||||||||| | |||||||||||||||||||||    
T  31290839 gtggtcgttttcgcgaaggagtctgatttaggtggtgatgtgtatat-gaagggaattgtcctcaggggtgttttt-atggtgtttattttcgggtgttc 31290742  T
Q  142 cgcctacata 151  Q
    || |||||||    
T  31290741 cgtctacata 31290732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 192
Target Start/End: Complemental strand, 9313088 - 9313011
Alignment:
Q  114 tttttagggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctctg 192  Q
    |||||||||||||||||||||||||||||||||| |||| | ||||||||| ||||||  | | |||||||| ||||||    
T  9313088 tttttagggtgtttattttcgggtgttccgcctatatac-gacgccttttgattgtattataagtttcaccggtctctg 9313011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 41 - 147
Target Start/End: Original strand, 52278547 - 52278648
Alignment:
Q  41 ggtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgtt 140  Q
    |||||||||||||||| ||| || ||||  ||||| || ||||  ||||||||||||||||||||| || ||| ||| ||| ||||||||||| ||||||    
T  52278547 ggtggtcgttttcgtgtaggcgt-tgttcgaggtggtggcgtg--ttttggtgggtgttgtcctcgtgg-tgtctttaagg-tgtttattttcaggtgtt 52278641  T
Q  141 ccgccta 147  Q
    |||||||    
T  52278642 ccgccta 52278648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 4431008 - 4431084
Alignment:
Q  114 tttttagggtgtttattttcgggtgttcc-gcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctct 191  Q
    ||||||||||||| |||||  |||||||| ||||  |||||| |||||||||||||||| ||||||||||||| |||||    
T  4431008 tttttagggtgtt-atttttaggtgttcccgcctttatacgg-cgccttttgtttgtattctcaatttcaccggtctct 4431084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 152
Target Start/End: Original strand, 46603632 - 46603732
Alignment:
Q  50 tttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctaca 149  Q
    |||||||||| |||||||||||| || |||  |  |||||||||||||||||| || ||||| |||| |   || ||||||||||||||||||||||| |    
T  46603632 tttcgtgaagaagtctgttttagatggtga-ttttattttggtgggtgttgtcttcaggggtcttttatgatgt-tttattttcgggtgttccgcctata 46603729  T
Q  150 tac 152  Q
    |||    
T  46603730 tac 46603732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 42374526 - 42374573
Alignment:
Q  123 tgtttattttcgggtgttccgcctacatacgggcgccttttgtttgtat 171  Q
    ||||||||||||||||||||||||| |||  |||||| |||||||||||    
T  42374526 tgtttattttcgggtgttccgcctatata-tggcgccctttgtttgtat 42374573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 151
Target Start/End: Original strand, 49820486 - 49820526
Alignment:
Q  112 gttttttagggtgtttattttc-gggtgttccgcctacata 151  Q
    |||||||| ||||||||||||| ||||||||||||||||||    
T  49820486 gttttttatggtgtttattttccgggtgttccgcctacata 49820526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 6 - 192
Target Start/End: Complemental strand, 26045827 - 26045634
Alignment:
Q  6 ggggtgagtagtgatgatgggcggtgttggatatcg--------gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtg 97  Q
    |||||||||||||| |||||| |||||||||| |||        |||||| ||||| ||||| ||||||||||||||| |||||||||||||||||||||    
T  26045827 ggggtgagtagtgacgatgggaggtgttggatttcgtttttaccgtggtcattttcatgaagaagtctgttttaggtggtgacgtgaattttggtgggtg 26045728  T
Q  98 ttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctctg 192  Q
    |||||||| |||| ||||||||||||||||||||| || ||||||| ||| |||| |||||||||||||||||||||||| ||||||| ||||||    
T  26045727 ttgtcctcaggggcgttttttagggtgtttatttttggatgttccgtctatatac-ggcgccttttgtttgtatgctcaacttcaccggtctctg 26045634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 48 - 171
Target Start/End: Original strand, 30097600 - 30097722
Alignment:
Q  48 gttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgccta 147  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||  || |||||||||||||||||||||||||||||||||||||    
T  30097600 gttttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggtgttgtcatcatggatgttttttagggtgtttattttcgggtgttccgccta 30097699  T
Q  148 catacgggcgccttttgtttgtat 171  Q
     |||| |||| |||| ||||||||    
T  30097700 tatac-ggcgtctttagtttgtat 30097722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 55 - 185
Target Start/End: Complemental strand, 26405354 - 26405226
Alignment:
Q  55 tgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacatacgg 154  Q
    ||||| ||||||||||||||| ||||||| |||||||||| |||||||||| ||||||| ||||| ||||||||||||||||||||||| ||| |||| |    
T  26405354 tgaagaagtctgttttaggtggtgacgtgtattttggtggttgttgtcctcaggggtgt-ttttaaggtgtttattttcgggtgttccgactatatac-g 26405257  T
Q  155 gcgccttttgtttgtatgctcaatttcaccg 185  Q
     |||||||||||||||| |||| ||||||||    
T  26405256 acgccttttgtttgtattctcagtttcaccg 26405226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 61 - 183
Target Start/End: Complemental strand, 13954049 - 13953928
Alignment:
Q  61 agtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacatacgggcgcct 160  Q
    ||||||||||||| |||||| || ||||||||||| |||||||||  |||| ||||||| ||||||||||||| ||||||||||||| |||| |||||||    
T  13954049 agtctgttttaggagatgacatgtattttggtgggagttgtcctcaagggtattttttaaggtgtttattttcaggtgttccgcctatatac-ggcgcct 13953951  T
Q  161 tttgtttgtatgctcaatttcac 183  Q
    || |||||||  |||| ||||||    
T  13953950 ttagtttgtactctcagtttcac 13953928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 48 - 144
Target Start/End: Complemental strand, 7195114 - 7195019
Alignment:
Q  48 gttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgc 144  Q
    ||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||| | | |||| ||||||||||||||||||| || ||||||||    
T  7195114 gtttttgtgaaggagtctgttttaggtggtgacgtgtattttggtgggtgttgtccgcagcggtg-tttttagggtgtttatttttggatgttccgc 7195019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 43 - 183
Target Start/End: Complemental strand, 14302262 - 14302124
Alignment:
Q  43 tggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttcc 142  Q
    |||||||||||| |||||| ||||||||||||| ||||||| |||||||||||||||||| || ||||||| ||||||| | |||||||| |||||||||    
T  14302262 tggtcgttttcgcgaaggaatctgttttaggtggtgacgtgtattttggtgggtgttgtcatcaggggtgt-ttttaggatttttatttttgggtgttcc 14302164  T
Q  143 gcctacatacgggcgccttttgtttgtatgctcaatttcac 183  Q
      ||| |||| |||| || |||||| |||  ||||||||||    
T  14302163 ttctatatac-ggcgtctcttgtttatattttcaatttcac 14302124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 42 - 192
Target Start/End: Original strand, 10174942 - 10175089
Alignment:
Q  42 gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttc 141  Q
    |||||||||||   |||||||||||||||||||| | ||||| | ||||||||||||||||||||| |||| |||||||| |||||| |||| ||||||     
T  10174942 gtggtcgttttttagaaggagtctgttttaggtggttacgtgtactttggtgggtgttgtcctcggaggtg-tttttaggatgttta-tttcaggtgttt 10175039  T
Q  142 cgcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctctg 192  Q
     ||||| |||| |  ||||||||||||||| || |||||||||| ||||||    
T  10175040 tgcctatatac-gatgccttttgtttgtattcttaatttcaccggtctctg 10175089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 42 - 184
Target Start/End: Complemental strand, 33110017 - 33109881
Alignment:
Q  42 gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttc 141  Q
    ||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||| | ||| |   ||||||  |||||||||||||||||||     
T  33110017 gtggtcgttttcgtgaaggggtttgttttaggtgatgacgtgtattttggtgggtgttgtcatagggtg---tttttaaagtgtttattttcgggtgttt 33109921  T
Q  142 cgcctacatacgggcgccttttgtttgtatgctcaatttcacc 184  Q
    || ||| | |   ||| ||||||||||||| |||| |||||||    
T  33109920 cggctataca---gcgtcttttgtttgtattctcagtttcacc 33109881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 43 - 192
Target Start/End: Original strand, 8297734 - 8297880
Alignment:
Q  43 tggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttcc 142  Q
    ||||| ||||| ||||||||| ||||||||||| ||| ||| |||||||||| |||| ||||| |||||| |||||||||||| ||||||| ||||||||    
T  8297734 tggtctttttcttgaaggagtgtgttttaggtggtgatgtgtattttggtggatgttatcctcaggggtg-tttttagggtgtgtattttcaggtgttcc 8297832  T
Q  143 gcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctctg 192  Q
    |||||  |||   |||||||| ||||||| |||| |||||||| ||||||    
T  8297833 gcctatgtac-aacgcctttt-tttgtattctcagtttcaccggtctctg 8297880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 40 - 184
Target Start/End: Original strand, 7682813 - 7682955
Alignment:
Q  40 cggtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgt 139  Q
    ||||||||||||| ||||| |||||| ||||||||| ||| ||| ||||||||||||||||| |||    || |||||| ||||| |||||||||| |||    
T  7682813 cggtggtcgtttttgtgaaagagtctattttaggtggtgatgtgtattttggtgggtgttgttctcataagtatttttt-gggtgcttattttcggatgt 7682911  T
Q  140 tccgcctacatacgggcgccttttgtttgtatgctcaatttcacc 184  Q
    |||||||| |||| | |||||||  ||||||| |||| |||||||    
T  7682912 tccgcctatatac-gacgcctttaatttgtattctcagtttcacc 7682955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 85 - 192
Target Start/End: Original strand, 25992307 - 25992411
Alignment:
Q  85 attttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgtatgctcaatttcacc 184  Q
    |||||||||||||||||| | |||| |||||| ||||||||||||| ||||||||||||| || |||| ||||||||||||||||||  ||| |||||||    
T  25992307 attttggtgggtgttgtcattgggg-tgtttt-tagggtgtttattgtcgggtgttccgcatatatac-ggcgccttttgtttgtattatcattttcacc 25992403  T
Q  185 gatctctg 192  Q
    | ||||||    
T  25992404 ggtctctg 25992411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 48 - 127
Target Start/End: Complemental strand, 21398133 - 21398054
Alignment:
Q  48 gttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgttt 127  Q
    ||||||||||||| ||||||||||| || ||||||| ||||| ||  ||||||||||| ||||||||||||| |||||||    
T  21398133 gttttcgtgaaggcgtctgttttagatggtgacgtgtatttttgtaagtgttgtcctcaggggtgttttttaaggtgttt 21398054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 195
Target Start/End: Original strand, 5187219 - 5187355
Alignment:
Q  57 aaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacatacgggc 156  Q
    |||||||||| |||||||| ||| ||| | || ||||| |||| |||||  | ||| |||| | |||||||||||||||||| | |  ||| || | |||    
T  5187219 aaggagtctggtttaggtggtgatgtgtacttgggtggatgttatcctcatgagtgctttt-atggtgtttattttcgggtgcttcatctatatgc-ggc 5187316  T
Q  157 gccttttgtttgtatgctcaatttcaccgatctctgctc 195  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  5187317 gccttttgtttgtattctcaatttcaccgatctctgctc 5187355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 47 - 153
Target Start/End: Complemental strand, 4914315 - 4914208
Alignment:
Q  47 cgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtg-ttttttagggtgtttattttcgggtgttccgcc 145  Q
    |||||||||||| ||||||| |||||||| ||| ||| ||||||||||||||  ||||| || ||| |||||||| | ||||||| |||| ||||||||     
T  4914315 cgttttcgtgaaagagtctgatttaggtggtgaagtgtattttggtgggtgtaatcctcaggagtgtttttttagagggtttattatcggatgttccgca 4914216  T
Q  146 tacatacg 153  Q
    || |||||    
T  4914215 tatatacg 4914208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 65 - 135
Target Start/End: Original strand, 7403669 - 7403737
Alignment:
Q  65 tgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgg 135  Q
    |||||| |||| |||||||||||||||||||||||||| ||  ||  ||||||||||||||||||||||||    
T  7403669 tgttttcggtggtgacgtgaattttggtgggtgttgtcttcatgg--gttttttagggtgtttattttcgg 7403737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 170
Target Start/End: Original strand, 31742504 - 31742552
Alignment:
Q  121 ggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgta 170  Q
    ||||||| ||||||||||||||||||| |||| |||||||||||||||||    
T  31742504 ggtgtttgttttcgggtgttccgcctatatac-ggcgccttttgtttgta 31742552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 37108104 - 37108170
Alignment:
Q  85 attttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacatac 152  Q
    ||||||||||||||| |||||  ||||||||| |||||||||||||||  | ||||||||||| ||||    
T  37108104 attttggtgggtgttatcctcatgggtgtttt-tagggtgtttattttttgatgttccgcctatatac 37108170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 171
Target Start/End: Complemental strand, 24072014 - 24071953
Alignment:
Q  109 ggtgttttttagggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgtat 171  Q
    ||||| ||||| | ||||||||||||||||||||||||| |||| |||||| || ||||||||    
T  24072014 ggtgtcttttatgatgtttattttcgggtgttccgcctatatac-ggcgcccttagtttgtat 24071953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 192
Target Start/End: Complemental strand, 33258637 - 33258560
Alignment:
Q  114 tttttagggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctctg 192  Q
    |||||| |||||||||||||||||||| | | || |||| |||||||||| |||||||   ||||||||||| ||||||    
T  33258637 tttttatggtgtttattttcgggtgtttcacatatatac-ggcgccttttatttgtatttccaatttcaccggtctctg 33258560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 7e-42; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 17656605 - 17656408
Alignment:
Q  1 ctttgggggtgagtagtgatgatgggcggtgttggatatcg--------gtggtcgtttt-cgtgaaggagtctgttttaggtgatgacgtgaattttgg 91  Q
    |||||||||||||||||||  ||| ||||||||||||||||        ||||||||||| | |||||||||||||||||| || |||||||||||||||    
T  17656605 ctttgggggtgagtagtgacaatgagcggtgttggatatcgtttttgcagtggtcgtttttcttgaaggagtctgttttagatggtgacgtgaattttgg 17656506  T
Q  92 tgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctct 191  Q
    ||||||||||||||  ||||| ||||||||||||| |||||||||||||||| ||| |||| | |||||||||||| |||| |||||||||||| |||||    
T  17656505 tgggtgttgtcctcaagggtg-tttttagggtgttaattttcgggtgttccgtctatatac-gacgccttttgtttatatgttcaatttcaccggtctct 17656408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 42 - 182
Target Start/End: Complemental strand, 10248386 - 10248246
Alignment:
Q  42 gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtg-tttattttcgggtgtt 140  Q
    |||||||||||||||||||||| ||||||||||| ||||||| ||||||| |||||||||||||  |||||||||||| |||| ||| |||| |||||||    
T  10248386 gtggtcgttttcgtgaaggagtttgttttaggtggtgacgtgtattttggcgggtgttgtcctcaagggtgttttttaaggtgtttttttttagggtgtt 10248287  T
Q  141 ccgcctacatacgggcgccttttgtttgtatgctcaatttca 182  Q
    ||||||| |||| | ||||||| | |||||| |||| |||||    
T  10248286 ccgcctatatac-gacgcctttaggttgtattctcagtttca 10248246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 43 - 170
Target Start/End: Complemental strand, 8862441 - 8862314
Alignment:
Q  43 tggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgttta-ttttcgggtgttc 141  Q
    |||| ||| ||||| | ||||| |||||||||| ||||||| ||||| ||||||||||||||  ||||||||||||| |||||||| ||||||| |||||    
T  8862441 tggttgttctcgtgtaagagtcagttttaggtggtgacgtgtatttttgtgggtgttgtccttcggggtgttttttatggtgtttatttttcggatgttc 8862342  T
Q  142 cgcctacatacgggcgccttttgtttgta 170  Q
    || ||| |||| |||||||||||||||||    
T  8862341 cgtctatatac-ggcgccttttgtttgta 8862314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 12197943 - 12197747
Alignment:
Q  1 ctttgggggtgagtagtgatgatgggcggtgttggatatcg--------gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggt 92  Q
    ||||||||||||||||||| || ||| |||| |||||||||        |||||||| ||| |||||| ||||||| |||||| ||||||| ||||| ||    
T  12197943 ctttgggggtgagtagtgacgacgggtggtgctggatatcgtttttttagtggtcgtgttcatgaaggcgtctgttgtaggtggtgacgtgtatttttgt 12197844  T
Q  93 gggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctct 191  Q
    || |||||||| | | ||||| |||||||||||||||||||  |||||||||||| | || | ||||||| |||||||| |||   |||||||||||||    
T  12197843 gg-tgttgtccccagaggtgtcttttagggtgtttattttcccgtgttccgcctatagac-gacgcctttagtttgtattctctgattcaccgatctct 12197747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 12442371 - 12442175
Alignment:
Q  1 ctttgggggtgagtagtgatgatgggcggtgttggatatcg--------gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggt 92  Q
    ||||||||||||||||||| || ||| |||| |||||||||        |||||||| ||| |||||| ||||||| |||||| ||||||| ||||| ||    
T  12442371 ctttgggggtgagtagtgacgacgggtggtgctggatatcgtttttttagtggtcgtgttcatgaaggcgtctgttgtaggtggtgacgtgtatttttgt 12442272  T
Q  93 gggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctct 191  Q
    || |||||||| | | ||||| |||||||||||||||||||  |||||||||||| | || | ||||||| |||||||| |||   |||||||||||||    
T  12442271 gg-tgttgtccccagaggtgtcttttagggtgtttattttcccgtgttccgcctatagac-gacgcctttagtttgtattctctgattcaccgatctct 12442175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 144
Target Start/End: Complemental strand, 2273860 - 2273769
Alignment:
Q  47 cgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgc 144  Q
    |||||||||||||||||||||||     | ||||||| |||| ||||||||||||| ||  || | ||||||||||||||||||||| ||||||||||    
T  2273860 cgttttcgtgaaggagtctgttt-----ggtgacgtgtattt-ggtgggtgttgtcatccaggatattttttagggtgtttattttcaggtgttccgc 2273769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 126
Target Start/End: Complemental strand, 43312458 - 43312375
Alignment:
Q  42 gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtt 126  Q
    ||||||||||| ||| ||||||||| |||||||| |||| || |||||| ||||||||||  || | ||||||||||||| ||||    
T  43312458 gtggtcgtttttgtgtaggagtctgatttaggtggtgacatgtattttgatgggtgttgt-ttcagcggtgttttttaggatgtt 43312375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 6e-39; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 43 - 192
Target Start/End: Original strand, 7696224 - 7696371
Alignment:
Q  43 tggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttcc 142  Q
    ||||||||||||||||||||| | ||||||||| ||| ||| |||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||    
T  7696224 tggtcgttttcgtgaaggagtttattttaggtggtgatgtgtattttggtgggtgttgtcctcgggggtg-tttttaaggtgtttatttttgggtgttcc 7696322  T
Q  143 gcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctctg 192  Q
    ||||| |||| ||  |||||||||||||| |||||||||| || ||||||    
T  7696323 gcctatatac-ggttccttttgtttgtattctcaatttcatcggtctctg 7696371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 37770509 - 37770324
Alignment:
Q  1 ctttgggggtgagtagtgatgatgggcggtgttggatatcggtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttg 100  Q
    ||||||||| ||||||||| || ||| ||||||||||    ||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||| |     
T  37770509 ctttgggggcgagtagtgacgacgggtggtgttggattatagtggtggttttcgtgaaggagtctgttttaggtggtgacgtggattttggtgggtggta 37770410  T
Q  101 tcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctctg 192  Q
    |||||   |||| |||||||||||||||||||||||||||||||||| |||| | |||   |||||||||| ||||  ||||||||||||||    
T  37770409 tcctc-atggtg-tttttagggtgtttattttcgggtgttccgcctatatac-gacgc---ttgtttgtattctcatattcaccgatctctg 37770324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 42 - 171
Target Start/End: Original strand, 4975006 - 4975134
Alignment:
Q  42 gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttc 141  Q
    |||||||||||||||||| ||||||||||||||| ||  ||| | ||||||||||||| |||||  || ||||||| |||||||||||||||||||||||    
T  4975006 gtggtcgttttcgtgaagaagtctgttttaggtggtggtgtgtaatttggtgggtgttatcctcaaggatgtttttcagggtgtttattttcgggtgttc 4975105  T
Q  142 cgcctacatacgggcgccttttgtttgtat 171  Q
     ||||| |||| | ||||||| ||||||||    
T  4975106 agcctatatac-gacgcctttagtttgtat 4975134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 42 - 171
Target Start/End: Original strand, 4992914 - 4993042
Alignment:
Q  42 gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttc 141  Q
    |||||||||||||||||| ||||||||||||||| ||  ||| | ||||||||||||| |||||  || ||||||| |||||||||||||||||||||||    
T  4992914 gtggtcgttttcgtgaagaagtctgttttaggtggtggtgtgtaatttggtgggtgttatcctcaaggatgtttttcagggtgtttattttcgggtgttc 4993013  T
Q  142 cgcctacatacgggcgccttttgtttgtat 171  Q
     ||||| |||| | ||||||| ||||||||    
T  4993014 agcctatatac-gacgcctttagtttgtat 4993042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 91 - 192
Target Start/End: Original strand, 13337561 - 13337660
Alignment:
Q  91 gtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctc 190  Q
    ||||||||||||||| |||||||||| |||||||||||||||| |||||||| |||| |||| | |||||||||||||||| |||  |||||||| ||||    
T  13337561 gtgggtgttgtcctcaggggtgtttt-tagggtgtttattttcaggtgttccacctatatac-gacgccttttgtttgtattctctgtttcaccggtctc 13337658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 45 - 152
Target Start/End: Complemental strand, 41113554 - 41113450
Alignment:
Q  45 gtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgc 144  Q
    ||||||||||||||||||||||||||||||  | ||||  |||||||||||||    ||||  |||||||||||||||| ||||||||||| ||||||||    
T  41113554 gtcgttttcgtgaaggagtctgttttaggtagtaacgtttattttggtgggtgc---cctcatgggtgttttttagggtatttattttcggatgttccgc 41113458  T
Q  145 ctacatac 152  Q
    ||| ||||    
T  41113457 ctatatac 41113450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 42 - 192
Target Start/End: Original strand, 34230464 - 34230610
Alignment:
Q  42 gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttc 141  Q
    ||||||||||||||| | |||||||||| || || ||||||| |||||||||| |||||| ||  |||||| |||||| | ||||||||||  |||||||    
T  34230464 gtggtcgttttcgtggaagagtctgttt-agatggtgacgtgtattttggtggatgttgttctaaggggtg-tttttacgatgtttattttttggtgttc 34230561  T
Q  142 cgcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctctg 192  Q
    |||||| |||| |||| ||||||||||||| | | | ||||||||||||||    
T  34230562 cgcctatatac-ggcgtcttttgtttgtattcgc-agttcaccgatctctg 34230610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 12343081 - 12343142
Alignment:
Q  44 ggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctc 105  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||| ||| ||||||||||    
T  12343081 ggtcgttttcgtgaaggagtctgttttaggtggtgacgtgtattttgatggatgttgtcctc 12343142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 45 - 152
Target Start/End: Complemental strand, 10173396 - 10173289
Alignment:
Q  45 gtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgc 144  Q
    ||||||||| |||||  ||||||||||||   |||| || |||||| ||||| |||||||| | ||| | ||||||||||||||||||| ||||||||||    
T  10173396 gtcgttttcatgaagacgtctgttttaggccgtgacatgtattttgatgggtattgtcctcagaggtatcttttagggtgtttattttcaggtgttccgc 10173297  T
Q  145 ctacatac 152  Q
    ||| ||||    
T  10173296 ctatatac 10173289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 192
Target Start/End: Original strand, 29997220 - 29997355
Alignment:
Q  55 tgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacatacgg 154  Q
    ||||||| |||||||||| || ||||||  ||||| || || || |||||| ||| || |||| ||| ||||||||||||| |||||||| || |||| |    
T  29997220 tgaaggaatctgttttagatggtgacgtatattttagtaggagtggtcctcagggatgatttt-aggatgtttattttcggatgttccgcttatatac-g 29997317  T
Q  155 gcgccttttgtttgtatgctcaatttcaccgatctctg 192  Q
    | ||||||||||| |||  ||||||||| || ||||||    
T  29997318 gtgccttttgtttttattttcaatttcatcggtctctg 29997355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 192
Target Start/End: Complemental strand, 41086570 - 41086475
Alignment:
Q  95 gtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctctg 192  Q
    |||||||| || ||||||||||| ||||| |||||||||||||||| |||||| |||| |  || |||| |||||||||||| |||||| | ||||||    
T  41086570 gtgttgtcttcaggggtgttttt-agggtatttattttcgggtgtttcgcctatatac-gatgctttttctttgtatgctcagtttcactggtctctg 41086475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 22884869 - 22884806
Alignment:
Q  107 ggggtgttttttagggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgtat 171  Q
    |||||||||| || || |||||||||||||||||||||||| |||| | ||||||| ||||||||    
T  22884869 ggggtgttttgtatggagtttattttcgggtgttccgcctatatac-gacgcctttagtttgtat 22884806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 107 - 192
Target Start/End: Original strand, 4472269 - 4472353
Alignment:
Q  107 ggggtgttttttagggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctctg 192  Q
    |||||| |||||| ||||||||||||||| ||||||| ||| |||| | ||||||| |||||||| |||   |||||||| |||||    
T  4472269 ggggtgatttttatggtgtttattttcggatgttccgtctatatac-gacgcctttagtttgtattctctgattcaccgaactctg 4472353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 100
Target Start/End: Complemental strand, 27879970 - 27879913
Alignment:
Q  44 ggtcgttttcgtgaaggagtctgttttaggtgatgacg-tgaattttggtgggtgttg 100  Q
    |||||||||| ||||||||||||||||||||| ||| | | | |||||||||||||||    
T  27879970 ggtcgttttcctgaaggagtctgttttaggtggtgatgtttatttttggtgggtgttg 27879913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 43 - 184
Target Start/End: Original strand, 49747790 - 49747930
Alignment:
Q  43 tggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttcc 142  Q
    |||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||| | ||||||||||| |||||||||||| || ||||||    
T  49747790 tggtcgttttcgtgaaagagtctgttttaggtggtgacatgaattttggtgggtgttgtcctcagaggtgttttttatggtgtttatttttggatgttcc 49747889  T
Q  143 gcctacatacgggcgccttttgtttgtatgctcaatttcacc 184  Q
    || || |||| |  | |||||||||||||||| |||||||||    
T  49747890 gcatatatac-gatgtcttttgtttgtatgctaaatttcacc 49747930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 48 - 192
Target Start/End: Complemental strand, 38637047 - 38636905
Alignment:
Q  48 gttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgccta 147  Q
    |||||||||||||||| ||||||||||| |||| || ||||| ||||||||||||||||||||| || |||| ||||||||||||| |||||||||||||    
T  38637047 gttttcgtgaaggagtttgttttaggtggtgacatgtattttcgtgggtgttgtcctcgggggttttatttaaggtgtttattttcaggtgttccgccta 38636948  T
Q  148 catacgggcgccttttgtttgtatgctcaatttcaccgatctctg 192  Q
     |||| ||||||| |||||||||  |||| |||||||| ||||||    
T  38636947 -atac-ggcgcctcttgtttgtagtctcattttcaccggtctctg 38636905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 48 - 184
Target Start/End: Complemental strand, 41117781 - 41117647
Alignment:
Q  48 gttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgccta 147  Q
    ||||||||| | ||||||||| |||||| |||  || |||||||||||||||||||||  || |||| ||||||||||||||||||||||||||||||||    
T  41117781 gttttcgtgcatgagtctgttctaggtggtgatatgtattttggtgggtgttgtcctcatgg-tgttatttagggtgtttattttcgggtgttccgccta 41117683  T
Q  148 catacgggcgccttttgtttgtatgctcaatttcacc 184  Q
     |||| |  |||| |||||||||  ||||||||||||    
T  41117682 tatac-gatgcctcttgtttgtagtctcaatttcacc 41117647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 49 - 192
Target Start/End: Complemental strand, 16832831 - 16832691
Alignment:
Q  49 ttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctac 148  Q
    |||||||| |||| | ||||||||||| ||||||  |||| |||||||||||||||| || | |||||| ||||||||||||||  |||||||||||||     
T  16832831 ttttcgtgcaggaatatgttttaggtggtgacgtttattt-ggtgggtgttgtcctcaggagagttttt-agggtgtttattttttggtgttccgcctat 16832734  T
Q  149 atacgggcgccttttgtttgtatgctcaatttcaccgatctctg 192  Q
    || | | |||||||||||||||| |||| |||||||||| ||||    
T  16832733 atgcag-cgccttttgtttgtattctcagtttcaccgatttctg 16832691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 49 - 133
Target Start/End: Complemental strand, 53823232 - 53823151
Alignment:
Q  49 ttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttc 133  Q
    |||| |||||||||||||||   |||||||||||| ||||||||||||||| ||||| ||||| |||||||||||||||||||||    
T  53823232 tttttgtgaaggagtctgtt---ggtgatgacgtgtattttggtgggtgttatcctcaggggtattttttagggtgtttattttc 53823151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 46 - 147
Target Start/End: Complemental strand, 19311181 - 19311081
Alignment:
Q  46 tcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcc 145  Q
    |||||||||||||||| |||||||  |||| ||||||| ||||||||||||||| ||| | |||| | ||||||||||||||| |||||| |||||||||    
T  19311181 tcgttttcgtgaaggaatctgtttatggtggtgacgtgtattttggtgggtgttatccccaggggag-tttttagggtgtttaatttcggatgttccgcc 19311083  T
Q  146 ta 147  Q
    ||    
T  19311082 ta 19311081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 39420904 - 39420745
Alignment:
Q  1 ctttgggggtgagtagtgatgatgggcggtgttggatatcg--------gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggt 92  Q
    ||||||| ||||||||||| || ||| ||||||||||||||        ||||| ||| ||||| ||||||| ||||||| || ||||||| ||||||||    
T  39420904 ctttgggtgtgagtagtgacgacgggtggtgttggatatcgtttatacggtggttgttctcgtgtaggagtcagttttagatggtgacgtgtattttggt 39420805  T
Q  93 gggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacatacg 153  Q
    || |||| | |||  | |||||||||| |||||| |||||||||||||||||||| |||||    
T  39420804 gg-tgttatgctcatgagtgttttttatggtgttcattttcgggtgttccgcctatatacg 39420745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 25753442 - 25753503
Alignment:
Q  49 ttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcggggg 110  Q
    ||||||||||||||| |||||||||||||||| || ||||||||||||||||||||| ||||    
T  25753442 ttttcgtgaaggagtttgttttaggtgatgacttgtattttggtgggtgttgtcctcagggg 25753503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 42 - 126
Target Start/End: Original strand, 52009101 - 52009184
Alignment:
Q  42 gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtt 126  Q
    ||||||| || | ||| ||||||||||||||||| || ||||| |||||||||| ||||||||| ||||||||||||||||||||    
T  52009101 gtggtcgcttccatgacggagtctgttttaggtggtggcgtgatttttggtggg-gttgtcctcaggggtgttttttagggtgtt 52009184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 192
Target Start/End: Original strand, 28967206 - 28967285
Alignment:
Q  112 gttttttagggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctctg 192  Q
    |||||||||||||||||||||| ||||||||||||| ||||  |||||||| ||||||||  ||  |||||||||||||||    
T  28967206 gttttttagggtgtttattttcaggtgttccgcctatatac-agcgcctttcgtttgtattatctgtttcaccgatctctg 28967285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 120 - 190
Target Start/End: Original strand, 48098645 - 48098714
Alignment:
Q  120 gggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctc 190  Q
    |||||||||||||||||||||||||||| ||||  ||| |||||||||||||  ||| |||||||||||||    
T  48098645 gggtgtttattttcgggtgttccgcctatatac-tgcgtcttttgtttgtattttcagtttcaccgatctc 48098714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 152
Target Start/End: Complemental strand, 2061627 - 2061542
Alignment:
Q  67 ttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacatac 152  Q
    ||||||||| |||| || |||||| ||||||||| |||| ||||| |||||||| ||||||||| || | ||||||||||| ||||    
T  2061627 ttttaggtggtgacttgtattttgatgggtgttgccctcaggggtattttttagtgtgtttattatcagatgttccgcctatatac 2061542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 115
Target Start/End: Complemental strand, 22810980 - 22810907
Alignment:
Q  42 gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttt 115  Q
    ||||||| |||||||||| ||||||||||||| | ||||||| |||||||||||||  ||||||  ||||||||    
T  22810980 gtggtcggtttcgtgaagcagtctgttttaggaggtgacgtgtattttggtgggtgaggtcctctagggtgttt 22810907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 99
Target Start/End: Original strand, 49528333 - 49528390
Alignment:
Q  42 gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgtt 99  Q
    ||||||| | || ||||||||||| |||||||||||||||||  ||||||||||||||    
T  49528333 gtggtcggtgtcatgaaggagtctattttaggtgatgacgtgttttttggtgggtgtt 49528390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 52009178 - 52009234
Alignment:
Q  134 gggtgttccgcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctct 191  Q
    |||||||||||||| |||||| |||||| |||||| ||||||| ||||||||||||||    
T  52009178 gggtgttccgcctatatacgg-cgccttatgtttgcatgctcagtttcaccgatctct 52009234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 191
Target Start/End: Original strand, 42719494 - 42719565
Alignment:
Q  119 agggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctct 191  Q
    ||||||||||||||| ||| |||||| || |||||| || ||||||||||||| |||| |||||||| |||||    
T  42719494 agggtgtttattttcaggttttccgcttatatacgg-cgtcttttgtttgtattctcagtttcaccggtctct 42719565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 141
Target Start/End: Complemental strand, 19815041 - 19814939
Alignment:
Q  42 gtggtcgttttcgtgaaggagtctgttttaggt---gatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtg 138  Q
    |||||| |||||||||||  |||||||| ||||   | |||||||  ||||||||||||||||||| |   |||| ||||| | |||||||||| |||||    
T  19815041 gtggtcattttcgtgaagacgtctgtttgaggtactggtgacgtgttttttggtgggtgttgtccttgaaagtgtcttttatgatgtttatttttgggtg 19814942  T
Q  139 ttc 141  Q
    |||    
T  19814941 ttc 19814939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 20464804 - 20464840
Alignment:
Q  2 tttgggggtgagtagtgatgatgggcggtgttggata 38  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  20464804 tttgggggtgagtagtgacgatgggcggtggtggata 20464840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 30964650 - 30964690
Alignment:
Q  1 ctttgggggtgagtagtgatgatgggcggtgttggatatcg 41  Q
    ||||| ||||||||||||||||||||||||| || ||||||    
T  30964650 ctttgtgggtgagtagtgatgatgggcggtggtgaatatcg 30964690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 75; Significance: 9e-35; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 50 - 192
Target Start/End: Original strand, 36976 - 37117
Alignment:
Q  50 tttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctaca 149  Q
    |||||||||||||||||||||||||| ||||||| |||||| ||||||| ||||||  |||||||||||| ||||||||||||||| ||||||||||| |    
T  36976 tttcgtgaaggagtctgttttaggtggtgacgtgtattttgttgggtgtggtcctcatgggtgttttttatggtgtttattttcggatgttccgcctata 37075  T
Q  150 tacgggcgccttttgtttgtatgctcaatttcaccgatctctg 192  Q
    |||  ||| |||||||||||||  ||| |||||||| ||||||    
T  37076 tac-agcgtcttttgtttgtattatcagtttcaccggtctctg 37117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 6e-30; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 43 - 192
Target Start/End: Original strand, 4171006 - 4171154
Alignment:
Q  43 tggtcgttttcgtgaaggagtctgttttaggtgatgacgt-gaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttc 141  Q
    ||||| ||||||||||||||||| ||||||||||||||||  | |||| |||||||||||||||   | || |||||||||||||||||||| |||||||    
T  4171006 tggtcattttcgtgaaggagtctattttaggtgatgacgtatattttttgtgggtgttgtcctcaatgatg-tttttagggtgtttattttcaggtgttc 4171104  T
Q  142 cgcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctctg 192  Q
    |||||| |||| | |||||||||||||||| |||| |||||||| ||||||    
T  4171105 cgcctatatac-gacgccttttgtttgtattctcagtttcaccggtctctg 4171154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 52 - 184
Target Start/End: Complemental strand, 50518898 - 50518768
Alignment:
Q  52 tcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacata 151  Q
    ||||||||||||||||||||| || ||| ||| |||||| ||||||| ||||||  |||||||||| ||||||||||||||||||||||||||||| |||    
T  50518898 tcgtgaaggagtctgttttagatggtgaggtgtattttgttgggtgtggtcctcatgggtgttttt-agggtgtttattttcgggtgttccgcctatata 50518800  T
Q  152 cgggcgccttttgtttgtatgctcaatttcacc 184  Q
    | | | |||||||||||||| |||| |||||||    
T  50518799 c-gacaccttttgtttgtattctcagtttcacc 50518768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 50 - 192
Target Start/End: Original strand, 14194200 - 14194340
Alignment:
Q  50 tttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctaca 149  Q
    |||||||| ||||||||||||||||| ||||||| |||||||||||||| ||||||  | ||| |||||||| ||||||||||||| ||||||||||| |    
T  14194200 tttcgtgatggagtctgttttaggtggtgacgtgtattttggtgggtgtggtcctcatgagtg-tttttaggatgtttattttcggatgttccgcctata 14194298  T
Q  150 tacgggcgccttttgtttgtatgctcaatttcaccgatctctg 192  Q
    ||  ||| |||||||||||| | |||| |||||| | ||||||    
T  14194299 ta-aggcaccttttgtttgtgttctcagtttcactggtctctg 14194340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 50 - 192
Target Start/End: Original strand, 25647953 - 25648093
Alignment:
Q  50 tttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctaca 149  Q
    |||||||| ||||| ||||||| ||| |||| ||   |||||||||||| ||||||  | ||||||| |||||||||||||||||||||||||| ||| |    
T  25647953 tttcgtgatggagtatgttttatgtggtgacatgttatttggtgggtgtggtcctcatgtgtgtttt-tagggtgtttattttcgggtgttccgtctata 25648051  T
Q  150 tacgggcgccttttgtttgtatgctcaatttcaccgatctctg 192  Q
    |||  ||||||||||||||||| || | |||||||||||||||    
T  25648052 tac-tgcgccttttgtttgtattcttagtttcaccgatctctg 25648093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 42 - 187
Target Start/End: Complemental strand, 33143770 - 33143628
Alignment:
Q  42 gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttc 141  Q
    ||||| |||||||||||||||| ||||||||||| |||||||  || |||||| |||| |||||  ||| ||||||| |||||||| |||||||||||||    
T  33143770 gtggtggttttcgtgaaggagtttgttttaggtggtgacgtgttttatggtggatgttatcctcttgggagtttttt-gggtgttt-ttttcgggtgttc 33143673  T
Q  142 cgcctacatacgggcgccttttgtttgtatgctcaatttcaccgat 187  Q
    |||||| |||  | ||||||||| |||||| |||| ||||||||||    
T  33143672 cgcctatata-tgacgccttttggttgtattctcagtttcaccgat 33143628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 46 - 142
Target Start/End: Complemental strand, 48893168 - 48893073
Alignment:
Q  46 tcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttcc 142  Q
    ||||||| || ||||||||| ||||||||| |||| || |||||||||||||||||| || ||||||| |||||  |||||||||||||| ||||||    
T  48893168 tcgtttttgtaaaggagtctcttttaggtggtgacatgtattttggtgggtgttgtcttcaggggtgt-ttttaaagtgtttattttcggatgttcc 48893073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 147
Target Start/End: Original strand, 41039379 - 41039523
Alignment:
Q  2 tttgggggtgagtagtgatgatgggcggtgttggatatcggt-ggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttg 100  Q
    |||||||||||||||||| |||| |  || ||| |||||| | ||||| ||| ||||| || ||||||||||||||| |  |   |||||||||||||||    
T  41039379 tttgggggtgagtagtgaagatgtgtagtattgtatatcgtttggtcgcttttgtgaaagaatctgttttaggtgataatattt-ttttggtgggtgttg 41039477  T
Q  101 tcctcgggggtgttttttagggtgtttattttcgggtgttccgccta 147  Q
    || ||  ||||||||| |||||||||||||||| |||||||||||||    
T  41039478 tcttcacgggtgtttt-tagggtgtttattttctggtgttccgccta 41039523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 189
Target Start/End: Complemental strand, 14280345 - 14280223
Alignment:
Q  64 ctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacatacgggcgcctttt 163  Q
    |||||||||||| ||||||| ||||| |||||||||||||||   ||   |||| || ||||||| |||||||||||||||||| |||| |||||||||     
T  14280345 ctgttttaggtggtgacgtgtattttagtgggtgttgtcctc--aggatattttcagagtgtttactttcgggtgttccgcctatatac-ggcgccttta 14280249  T
Q  164 gtttgtatgctcaatttcaccgatct 189  Q
     |||||||  ||| ||||| ||||||    
T  14280248 atttgtattatcagtttcatcgatct 14280223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 114
Target Start/End: Original strand, 27399217 - 27399278
Alignment:
Q  53 cgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgtt 114  Q
    |||||||||| |||||||||||||||| ||  |||||||||||||||||||||  |||||||    
T  27399217 cgtgaaggagcctgttttaggtgatgatgtttattttggtgggtgttgtcctcatgggtgtt 27399278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 154
Target Start/End: Complemental strand, 28937497 - 28937430
Alignment:
Q  85 attttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacatacgg 154  Q
    |||||||||||||||||| | |||| ||||||| |||||||||||||||||||||||||| || ||||||    
T  28937497 attttggtgggtgttgtcattgggg-tgttttt-agggtgtttattttcgggtgttccgcttatatacgg 28937430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 14893263 - 14893318
Alignment:
Q  114 tttttagggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgta 170  Q
    |||||||||||||||||||| ||||||||||||| |||| |||| ||||||||||||    
T  14893263 tttttagggtgtttattttcaggtgttccgcctatatac-ggcgtcttttgtttgta 14893318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 45 - 79
Target Start/End: Complemental strand, 46358223 - 46358189
Alignment:
Q  45 gtcgttttcgtgaaggagtctgttttaggtgatga 79  Q
    |||||||||||||||||||||||||||||||||||    
T  46358223 gtcgttttcgtgaaggagtctgttttaggtgatga 46358189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 115
Target Start/End: Original strand, 37123643 - 37123716
Alignment:
Q  42 gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttt 115  Q
    |||||||||||||||||| ||||| |||||  || ||| ||| |||||||||||||||||| ||  ||||||||    
T  37123643 gtggtcgttttcgtgaagaagtctattttatatggtgatgtgtattttggtgggtgttgtcttcaagggtgttt 37123716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 146
Target Start/End: Original strand, 7105109 - 7105209
Alignment:
Q  48 gttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggt-----gtttattttcgggtgttcc 142  Q
    |||||| ||||| ||||||||||||||| |||| ||  |||||| |||| ||||| ||||| ||||||||||||||     ||||||||| |||||||||    
T  7105109 gttttcttgaagaagtctgttttaggtggtgacatg--ttttggcgggt-ttgtcttcgggcgtgttttttagggttgggtgtttatttttgggtgttcc 7105205  T
Q  143 gcct 146  Q
    ||||    
T  7105206 gcct 7105209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 63 - 146
Target Start/End: Original strand, 12086524 - 12086607
Alignment:
Q  63 tctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcct 146  Q
    ||||||||||||| ||| ||  |||||||||||||| ||| | |||||| | ||||| | ||||||||||||  ||||||||||    
T  12086524 tctgttttaggtggtgatgtttattttggtgggtgtggtcttagggggtatcttttaagatgtttattttcgaatgttccgcct 12086607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 44 - 75
Target Start/End: Original strand, 32010025 - 32010056
Alignment:
Q  44 ggtcgttttcgtgaaggagtctgttttaggtg 75  Q
    ||||||||||||||||||||||||||||||||    
T  32010025 ggtcgttttcgtgaaggagtctgttttaggtg 32010056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 119 - 182
Target Start/End: Original strand, 37123708 - 37123770
Alignment:
Q  119 agggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgtatgctcaatttca 182  Q
    ||||||||||||||||||||||||| |||  || || |||||||||||||||| |||| |||||    
T  37123708 agggtgtttattttcgggtgttccgactatgta-ggacgccttttgtttgtattctcagtttca 37123770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 114
Target Start/End: Complemental strand, 823244 - 823184
Alignment:
Q  54 gtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgtt 114  Q
    |||| ||||| ||||||||||| ||| || |||||||||||||| |||||||  |||||||    
T  823244 gtgatggagtttgttttaggtggtgaagttaattttggtgggtgatgtcctcatgggtgtt 823184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 25594257 - 25594217
Alignment:
Q  113 ttttttagggtgtttattttcgggtgttccgcctacatacg 153  Q
    ||||||| |||||||| |||||||||||||||||| |||||    
T  25594257 ttttttatggtgtttactttcgggtgttccgcctatatacg 25594217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 114
Target Start/End: Complemental strand, 25594367 - 25594296
Alignment:
Q  42 gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgtt 114  Q
    ||||||||||| |||||||||| ||||||||||  ||| ||  ||| |||||||||||||||||  |||||||    
T  25594367 gtggtcgtttt-gtgaaggagtatgttttaggtagtgatgtttattgtggtgggtgttgtcctcatgggtgtt 25594296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 3e-25; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 46 - 140
Target Start/End: Complemental strand, 6492946 - 6492852
Alignment:
Q  46 tcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgtt 140  Q
    |||||||  ||||||||||||||||||||| |||||||||||||||||| ||||||||||   ||||||||||| ||||||||||||| ||||||    
T  6492946 tcgtttttatgaaggagtctgttttaggtggtgacgtgaattttggtggatgttgtcctcataggtgttttttatggtgtttattttcaggtgtt 6492852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 49 - 140
Target Start/End: Complemental strand, 24324610 - 24324520
Alignment:
Q  49 ttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgtt 140  Q
    ||||||||||||||||||||||| ||| ||||||| ||||||||| |||||||||||  ||||| ||||||| |||||||||||||||||||    
T  24324610 ttttcgtgaaggagtctgttttaagtggtgacgtgtattttggtgagtgttgtcctcaagggtg-tttttagagtgtttattttcgggtgtt 24324520  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 42 - 185
Target Start/End: Complemental strand, 16828919 - 16828778
Alignment:
Q  42 gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttc 141  Q
    ||||| |||||| |||||| | | ||||||| |||||| ||| |||||||||| |||| || || ||||| ||| | ||| |||||||||||||||||||    
T  16828919 gtggttgttttcttgaaggggccagttttagatgatgatgtgtattttggtggttgttttcttcaggggtatttct-aggatgtttattttcgggtgttc 16828821  T
Q  142 cgcctacatacgggcgccttttgtttgtatgctcaatttcaccg 185  Q
    |||||| |||| ||||| |||||||||||| |||| ||||||||    
T  16828820 cgcctatatac-ggcgcattttgtttgtattctcagtttcaccg 16828778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 42 - 185
Target Start/End: Original strand, 16954751 - 16954891
Alignment:
Q  42 gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttc 141  Q
    ||||| |||||| |||||  |||||||||||||| ||||||| ||||| |||| |||| || || |||||| ||||||| |||||||||||||| |||||    
T  16954751 gtggttgttttcttgaagatgtctgttttaggtggtgacgtgtatttttgtggttgttttcttcaggggtg-tttttagcgtgtttattttcggatgttc 16954849  T
Q  142 cgcctacatacgggcgccttttgtttgtatgctcaatttcaccg 185  Q
    |||||| |||| || ||||||| ||||||| |||| ||||||||    
T  16954850 cgcctatatac-ggtgccttttatttgtat-ctcagtttcaccg 16954891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 65 - 192
Target Start/End: Complemental strand, 42533055 - 42532930
Alignment:
Q  65 tgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacatacgggcgccttttg 164  Q
    ||||||||||||||||||   |||| |||||||||||| ||  ||| |||||| ||||||||||||| | ||||||||||||| |||| |||||||||||    
T  42533055 tgttttaggtgatgacgtatttttttgtgggtgttgtcatcaagggagttttt-agggtgtttatttccaggtgttccgcctatatac-ggcgccttttg 42532958  T
Q  165 tttgtatgctcaatttcaccgatctctg 192  Q
     |||||| |||| || ||||| ||||||    
T  42532957 gttgtattctcagttccaccggtctctg 42532930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 45 - 154
Target Start/End: Original strand, 3478613 - 3478722
Alignment:
Q  45 gtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgc 144  Q
    ||||| |||||||||  |||||||| || || |||| ||  ||||||||| |||||| ||| ||  ||| ||||||||||||||||||||||||||||||    
T  3478613 gtcgtattcgtgaagacgtctgtttgagttggtgacttgttttttggtggatgttgtgctctggattgtcttttagggtgtttattttcgggtgttccgc 3478712  T
Q  145 ctacatacgg 154  Q
    ||| ||||||    
T  3478713 ctatatacgg 3478722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 49 - 192
Target Start/End: Original strand, 33719235 - 33719375
Alignment:
Q  49 ttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctac 148  Q
    |||| ||||||||||| |||||||| | |||   | |||||||||||||||||||||  | |||||||| |||||||||| |||||  |||||||||||     
T  33719235 tttttgtgaaggagtcggttttaggcggtgataggtattttggtgggtgttgtcctcatgagtgttttt-agggtgtttactttcga-tgttccgcctat 33719332  T
Q  149 atacgggcgccttttgtttgtatgctcaatttcaccgatctctg 192  Q
    || | | |||| ||||||||||| |||| |||||||||||||||    
T  33719333 attcag-cgccgtttgtttgtattctcagtttcaccgatctctg 33719375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 114
Target Start/End: Complemental strand, 28534340 - 28534276
Alignment:
Q  50 tttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgtt 114  Q
    ||||||||| |||||||||||||||| ||| ||  ||||||||||||||||||||| ||||||||    
T  28534340 tttcgtgaaagagtctgttttaggtggtgatgtttattttggtgggtgttgtcctcaggggtgtt 28534276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 57 - 154
Target Start/End: Original strand, 1321072 - 1321167
Alignment:
Q  57 aaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacatacgg 154  Q
    |||| |||||||||||||| ||| ||| |||||||||| || |||| ||  ||  | ||||||||||||||||||||||| |||||||||| ||||||    
T  1321072 aaggggtctgttttaggtggtgatgtgtattttggtggatggtgtcttcaagg--ggtttttagggtgtttattttcgggagttccgcctatatacgg 1321167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 143
Target Start/End: Complemental strand, 6716556 - 6716455
Alignment:
Q  42 gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgtttttt--agggtgtttattttcgggtgt 139  Q
    ||||||||||||||||||||||  |||||||||| || | || | || ||| |||||| |||||| | |||||||||  ||||||||||||||| |||||    
T  6716556 gtggtcgttttcgtgaaggagt--gttttaggtggtgtcatgtacttgggttggtgttatcctcgtgagtgttttttttagggtgtttattttcaggtgt 6716459  T
Q  140 tccg 143  Q
    ||||    
T  6716458 tccg 6716455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 120 - 192
Target Start/End: Original strand, 36674809 - 36674880
Alignment:
Q  120 gggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctctg 192  Q
    |||||||||||||||| | ||||||||| |||||  ||||||||||||||||   ||||||||||||||||||    
T  36674809 gggtgtttattttcggatattccgcctatatacga-cgccttttgtttgtatctccaatttcaccgatctctg 36674880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 105
Target Start/End: Original strand, 23983466 - 23983529
Alignment:
Q  42 gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctc 105  Q
    ||||| ||||||||||| |||||||||||||||| ||  ||  |||||||||||||||||||||    
T  23983466 gtggttgttttcgtgaatgagtctgttttaggtggtggtgtttattttggtgggtgttgtcctc 23983529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 22567941 - 22567888
Alignment:
Q  50 tttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcc 103  Q
    ||||||||| |||||||||||||||| ||| ||| |||||||||| ||||||||    
T  22567941 tttcgtgaaagagtctgttttaggtggtgatgtgtattttggtggatgttgtcc 22567888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 192
Target Start/End: Complemental strand, 6726147 - 6726090
Alignment:
Q  134 gggtgttccgcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctctg 192  Q
    |||||||||||||| |||||| ||  |||||||||||| |||| |||||||||||||||    
T  6726147 gggtgttccgcctatatacgg-cgttttttgtttgtattctcagtttcaccgatctctg 6726090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 192
Target Start/End: Complemental strand, 28534240 - 28534175
Alignment:
Q  126 ttattttcgggtgttccgcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctctg 192  Q
    |||||||||||||||||||||| |||| |||||||||| ||||||| ||| |  |||||| ||||||    
T  28534240 ttattttcgggtgttccgcctatatac-ggcgccttttatttgtattctctaaatcaccggtctctg 28534175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 31409807 - 31409757
Alignment:
Q  55 tgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctc 105  Q
    ||||||||||||||||| ||||||| ||  ||||||| |||||||||||||    
T  31409807 tgaaggagtctgttttatgtgatgatgtttattttggagggtgttgtcctc 31409757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 114
Target Start/End: Complemental strand, 40292848 - 40292795
Alignment:
Q  61 agtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgtt 114  Q
    ||||||||||||| ||||| || |||||||||| ||| |||||||| |||||||    
T  40292848 agtctgttttaggcgatgaagttaattttggtgtgtgatgtcctcgtgggtgtt 40292795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 43235614 - 43235667
Alignment:
Q  40 cggtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtg 93  Q
    |||||| |||||||||||| |||||||||||| ||||| || || |||||||||    
T  43235614 cggtggccgttttcgtgaatgagtctgttttaagtgataacttgtattttggtg 43235667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 3867329 - 3867369
Alignment:
Q  1 ctttgggggtgagtagtgatgatgggcggtgttggatatcg 41  Q
    ||||||||||||||||||| ||||| ||||| |||||||||    
T  3867329 ctttgggggtgagtagtgacgatggacggtggtggatatcg 3867369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 49 - 192
Target Start/End: Complemental strand, 15120415 - 15120273
Alignment:
Q  49 ttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctac 148  Q
    |||| ||||| |||||||||||||||| ||| ||| |||||||||| ||||||||||  || |||||||||||||||||||| || | ||||| ||||||    
T  15120415 tttttgtgaatgagtctgttttaggtggtgatgtgtattttggtggatgttgtcctcatggatgttttttagggtgtttattgtcagatgttctgcctac 15120316  T
Q  149 atacgggcgccttttgtttgtatgctcaatttcaccgatctctg 192  Q
    |||| | || |||| |||||||| |||| ||| |||| ||||||    
T  15120315 atac-gtcgtctttagtttgtattctcagttttaccggtctctg 15120273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 87 - 192
Target Start/End: Complemental strand, 20701570 - 20701468
Alignment:
Q  87 tttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgtatgctcaatttcaccga 186  Q
    |||| ||||||||||||||| |||||||||  || |||||||||| | ||||||||||||| |||| | |||||||||||||||| |||| |||||||||    
T  20701570 tttgatgggtgttgtcctcgtgggtgtttt--agtgtgtttatttccaggtgttccgcctatatacag-cgccttttgtttgtattctcagtttcaccga 20701474  T
Q  187 tctctg 192  Q
    ||||||    
T  20701473 tctctg 20701468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 65 - 189
Target Start/End: Original strand, 6860317 - 6860440
Alignment:
Q  65 tgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccg--cctacatacgggcgccttt 162  Q
    ||||||||||||||||||| ||||| ||||| ||||||| |   |||||||| ||||||||||||||| ||||||||||  |||| |||| |||| ||||    
T  6860317 tgttttaggtgatgacgtgtatttttgtggg-gttgtccgcataggtgtttt-tagggtgtttatttttgggtgttccgcccctatatac-ggcgtcttt 6860413  T
Q  163 tgtttgtatgctcaatttcaccgatct 189  Q
    ||||||||| || | ||||||||||||    
T  6860414 tgtttgtattcttagtttcaccgatct 6860440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 106
Target Start/End: Complemental strand, 32935157 - 32935098
Alignment:
Q  47 cgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcg 106  Q
    ||||||||| ||||||||| ||||||||| ||  ||  ||||||||||||||||||||||    
T  32935157 cgttttcgttaaggagtctattttaggtggtggtgtttattttggtgggtgttgtcctcg 32935098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 192
Target Start/End: Complemental strand, 3880360 - 3880283
Alignment:
Q  114 tttttagggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctctg 192  Q
    |||||||||||||||||||  |||||||||| || |||| ||  ||||||||||||||  ||| |||||||| ||||||    
T  3880360 tttttagggtgtttattttttggtgttccgcttatatac-ggaaccttttgtttgtattttcagtttcaccggtctctg 3880283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 17278313 - 17278260
Alignment:
Q  50 tttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcc 103  Q
    ||||||||||||||||| |||||||| | | ||  |||||||||||||||||||    
T  17278313 tttcgtgaaggagtctgatttaggtggtaatgtttattttggtgggtgttgtcc 17278260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 17278215 - 17278171
Alignment:
Q  109 ggtgttttttagggtgtttattttcgggtgttccgcctacatacg 153  Q
    ||||| ||||| | ||||||||||||||||||||||||| |||||    
T  17278215 ggtgtcttttatgatgtttattttcgggtgttccgcctatatacg 17278171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1384 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: scaffold1384
Description:

Target: scaffold1384; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 42 - 167
Target Start/End: Complemental strand, 1475 - 1347
Alignment:
Q  42 gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggt---gttgtcctcgggggtgttttttagggtgttta-ttttcgggt 137  Q
    ||||| ||| ||||| ||||||| |||||||||| ||||||| ||||| ||||||   ||||||||  ||||||||||||| |||||||| |||||||||    
T  1475 gtggttgttctcgtgtaggagtcagttttaggtggtgacgtgtatttttgtgggttttgttgtccttaggggtgttttttatggtgtttatttttcgggt 1376  T
Q  138 gttccgcctacatacgggcgccttttgttt 167  Q
    |||| ||||| |||| ||||||||||||||    
T  1375 gttctgcctatatac-ggcgccttttgttt 1347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 167
Target Start/End: Original strand, 58391 - 58513
Alignment:
Q  43 tggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttcc 142  Q
    |||||||||||||||||||||||||||| |||| ||| ||| | |||||  | || ||| |||  ||||| |||||||||| |||||||| ||||||||     
T  58391 tggtcgttttcgtgaaggagtctgtttttggtggtgatgtgtactttggctgatggtgttctcatgggtg-tttttagggtatttatttttgggtgttct 58489  T
Q  143 gcctacatacgggcgccttttgttt 167  Q
     |||| |||| ||||||||||||||    
T  58490 acctatatac-ggcgccttttgttt 58513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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