View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4752_high_5 (Length: 495)

Name: NF4752_high_5
Description: NF4752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4752_high_5
NF4752_high_5
[»] chr3 (6 HSPs)
chr3 (17-485)||(776322-776790)
chr3 (227-485)||(32812505-32812763)
chr3 (340-412)||(5739612-5739684)
chr3 (340-412)||(5776724-5776796)
chr3 (346-413)||(47309343-47309410)
chr3 (257-327)||(29692702-29692772)
[»] chr2 (2 HSPs)
chr2 (340-412)||(43784785-43784857)
chr2 (340-412)||(9794998-9795070)
[»] chr1 (1 HSPs)
chr1 (340-412)||(23761145-23761217)
[»] chr8 (1 HSPs)
chr8 (343-412)||(26665952-26666021)


Alignment Details
Target: chr3 (Bit Score: 397; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 17 - 485
Target Start/End: Complemental strand, 776790 - 776322
Alignment:
Q  17 attaagtgcatacaataaagaaaatatggcattcttgaaagttgcattgttcggattttcaatgttatcaggatctaattatattgaattcattgaggaa 116  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  776790 attaagtgcatacaataaagaaaatatggcattcttgaaagttgtattgttcggattttcaatgttatcaggatctaattatattgaattcattgaggaa 776691  T
Q  117 ttccagatgcaccgtgttgtttttgtgtgctttgaacttttgacttaatcttgatatgagtttctctaatacaagttaatgtttgaaacaactagtcttt 216  Q
    |||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  776690 ttcca----caccgtgttgtttttgtgtgctttgaacttttgacttaatcttgatatgagtttctctaatacaagttaatgtttgaaacaactagtcttt 776595  T
Q  217 tgacccgtgca-----gcaaaaacgaataagttataacaaaataaatatatagtatctgatagaagtagtcagataaatattaaacatggatattatata 311  Q
    |||||||||||     ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||  ||||| ||||||||||||||||||||||    
T  776594 tgacccgtgcaatagagcaaaaacgaatatgttataacaaaataaatatatagtatctgatagaaatagtttgataagtattaaacatggatattatata 776495  T
Q  312 gtaatgataacatatttataatatatcgtagtctaattattgttaaagttttatgttcatcattatacattacaaaatatttcatgataaacgtcatttg 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  776494 gtaatgataacatatttataatatatcgtagtctaattattgttaaagttttatg-tcatcattatacattacaaaatatttcatgataaacgtcatttg 776396  T
Q  412 agatcgtcgtggtatattgtcaccatctttatccgtcattactatcttcaatccatctcttaaagtgacctttg 485  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  776395 agatcgtagtggtatattgtcaccatctttatcagtcattactatcttcaatccatctcttaaagtgacctttg 776322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 227 - 485
Target Start/End: Original strand, 32812505 - 32812763
Alignment:
Q  227 agcaaaaacgaataagttataacaaaataaatatatagtatctgatagaagtagtcagataaatattaaacatggatattatatagtaatgataacatat 326  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  32812505 agcaaaaacgaataagttataacaaaataaatatatagtatatgatagaagtagtctgataaatattaaacatggatattatatagtaatgataacatat 32812604  T
Q  327 ttataatatatcgtagtctaattattgttaaagttttatgttcatcattatacattacaaaatatttcatgataaacgtcatttgagatcgtcgtggtat 426  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  32812605 ttataatatatcgtagtctaattattgttaaagttttatgttcatcattatacattacaaaatatttcatgataaacgtcatttgagatcgtagtggtat 32812704  T
Q  427 attgtcaccatctttatccgtcattactatcttcaatccatctcttaaagtgacctttg 485  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  32812705 attgtcaccatctttatcagtcattactatcttcaatccaactcttaaagtgacctttg 32812763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 340 - 412
Target Start/End: Original strand, 5739612 - 5739684
Alignment:
Q  340 tagtctaattattgttaaagttttatgttcatcattatacattacaaaatatttcatgataaacgtcatttga 412  Q
    ||||||| ||||| |||| ||||||  |||||||| |||||||||||||||||||||| |||||| |||||||    
T  5739612 tagtctagttattattaacgttttacattcatcatcatacattacaaaatatttcatggtaaacgacatttga 5739684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 340 - 412
Target Start/End: Original strand, 5776724 - 5776796
Alignment:
Q  340 tagtctaattattgttaaagttttatgttcatcattatacattacaaaatatttcatgataaacgtcatttga 412  Q
    ||||||| ||||| |||| ||||||  |||||||| |||||||||||||||||||||| |||||| |||||||    
T  5776724 tagtctagttattattaacgttttacattcatcatcatacattacaaaatatttcatggtaaacgacatttga 5776796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 346 - 413
Target Start/End: Complemental strand, 47309410 - 47309343
Alignment:
Q  346 aattattgttaaagttttatgttcatcattatacattacaaaatatttcatgataaacgtcatttgag 413  Q
    ||||||||||||| ||||| ||||||||| ||||||||||||||  ||| ||||||||  ||||||||    
T  47309410 aattattgttaaatttttacgttcatcatcatacattacaaaatgcttcgtgataaacaacatttgag 47309343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 327
Target Start/End: Original strand, 29692702 - 29692772
Alignment:
Q  257 atatatagtatctgatagaagtagtcagataaatattaaacatggatattatatagtaatgataacatatt 327  Q
    ||||||||||||  |||||||| ||  ||||||  |||||||||||||||||| || |||||| |||||||    
T  29692702 atatatagtatccaatagaagttgtatgataaaatttaaacatggatattatacagcaatgatcacatatt 29692772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 412
Target Start/End: Complemental strand, 43784857 - 43784785
Alignment:
Q  340 tagtctaattattgttaaagttttatgttcatcattatacattacaaaatatttcatgataaacgtcatttga 412  Q
    ||||||| |||||||||| ||||||  |||||||| |||| |||| |||||||||||| |||||| |||||||    
T  43784857 tagtctagttattgttaatgttttacattcatcatcatacgttacgaaatatttcatggtaaacgacatttga 43784785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 340 - 412
Target Start/End: Complemental strand, 9795070 - 9794998
Alignment:
Q  340 tagtctaattattgttaaagttttatgttcatcattatacattacaaaatatttcatgataaacgtcatttga 412  Q
    ||||||| |||||||||| ||||||  || ||||| |||  |||| |||||||||||| |||||| |||||||    
T  9795070 tagtctagttattgttaacgttttacatttatcatcatatgttacgaaatatttcatggtaaacgacatttga 9794998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 412
Target Start/End: Complemental strand, 23761217 - 23761145
Alignment:
Q  340 tagtctaattattgttaaagttttatgttcatcattatacattacaaaatatttcatgataaacgtcatttga 412  Q
    ||||||| |||||||||| ||||||  |||||||| |||| |||| |||||||||||| |||||| |||||||    
T  23761217 tagtctagttattgttaacgttttacattcatcatcatacgttacgaaatatttcatggtaaacgacatttga 23761145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 412
Target Start/End: Complemental strand, 26666021 - 26665952
Alignment:
Q  343 tctaattattgttaaagttttatgttcatcattatacattacaaaatatttcatgataaacgtcatttga 412  Q
    |||| |||||||||| ||||||  |||||||| |||| |||| |||||||||||| | |||| |||||||    
T  26666021 tctagttattgttaacgttttacattcatcatcatacgttacgaaatatttcatggttaacgacatttga 26665952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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