View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4752_high_8 (Length: 459)
Name: NF4752_high_8
Description: NF4752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4752_high_8 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 244 - 459
Target Start/End: Complemental strand, 53983744 - 53983526
Alignment:
| Q |
244 |
gaattgtttgataacgtgactcattatctagtttttgtgagtatctctttaatttttaagtagagtcattccttacttttaagaaatgaaaatgatctc- |
342 |
Q |
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| T |
53983744 |
gaattgtttgataacgtgactcattatctagtttttgtgagtatctctttaatttttaagtagagtcattccttacttttaagaaatgaaaatgatctca |
53983645 |
T |
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| Q |
343 |
--ttagaaagcaggtgaagatttccaaagaataaaatactattcttgaaggtaagatgtataaaattatttggcaaaatttggtgcaagggatgatcaag |
440 |
Q |
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| T |
53983644 |
acttagaaagcaggtgaagatttccaaagaataaaatactattcttgaaggtaagatgtataaaattatttggcaaaatttggtgcaagggatgatcaag |
53983545 |
T |
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| Q |
441 |
agtttgtaattatgcaagc |
459 |
Q |
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| T |
53983544 |
agtttgtcattatgcaagc |
53983526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 9 - 186
Target Start/End: Complemental strand, 53983958 - 53983780
Alignment:
| Q |
9 |
agcagagagagtgagcatgaaattatctggatccaactgcaaggattatttcaatctnnnnnnnnnnnnnn-tcaaacagccaatttcgcaacaaaagat |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||| ||||||||||| |
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| T |
53983958 |
agcaaagagagtgagcatgaaattatctggatccaactacaaggattatttcaatctaaaaaaaataaaaaataaaacagccaatttcacaacaaaagat |
53983859 |
T |
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| Q |
108 |
gtataagatccactagaacttgaacattttggaaagggtcgggggtgcatgttaggactccatttaaattgagatagat |
186 |
Q |
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| T |
53983858 |
gtataagatccactagaacttgaacattttggaaagggtcgggggtgcatgtaaggactccatttaaattgagatagat |
53983780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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