View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4752_low_20 (Length: 311)
Name: NF4752_low_20
Description: NF4752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4752_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 33 - 289
Target Start/End: Original strand, 6002343 - 6002609
Alignment:
| Q |
33 |
tcgtatacaagtttttacatgccattt----------ggtgtttctccataatcggatccttggtagcgcatgcatctccaatattttttcctttctatt |
122 |
Q |
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| T |
6002343 |
tcgtatacaagtttttacatgccatttttcaccaaatggtctttctccataatcggatccttggtagcgcatgcatctccaatattttttcctttcaatt |
6002442 |
T |
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| Q |
123 |
gtgcaaattttctggggacaaaaatagagttttgttttggaaaaagctattcatagcgagaaattttctcgcgacaacaccacgaggcgtactgcatgca |
222 |
Q |
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| T |
6002443 |
gtgcaaattttctagggacaaaaatagagttttgttttggaaaaagctatttacagcgagaagttttctcgcgacaacaccacgaggcgtactgcatgca |
6002542 |
T |
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| Q |
223 |
agccaaattattattcacacacccatgtattttgcccacaacccatgaattgttccaaaatgcagat |
289 |
Q |
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| T |
6002543 |
agccaaattattattcacacacccatgtattttgcccacaacccatgaattgtgccaaaatgcagat |
6002609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 161 - 292
Target Start/End: Original strand, 32188249 - 32188380
Alignment:
| Q |
161 |
ggaaaaagctattcatagcgagaaattttctcgcgacaacaccacgaggcgtactgcatgcaagccaaattattattcacacacccatgtattttgccca |
260 |
Q |
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| T |
32188249 |
ggaaaaaactatttacagcgagaagttttctcgcgacaacaccacgacgcatactgcatgcaagccaaattattattcacacacccatgtattttgccta |
32188348 |
T |
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| Q |
261 |
caacccatgaattgttccaaaatgcagatcta |
292 |
Q |
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| T |
32188349 |
ccacccatgaattgtgccaaaatgcagatcta |
32188380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 161 - 291
Target Start/End: Complemental strand, 27645868 - 27645738
Alignment:
| Q |
161 |
ggaaaaagctattcatagcgagaaattttctcgcgacaacaccacgaggcgtactgcatgcaagccaaattattattcacacacccatgtattttgccca |
260 |
Q |
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|||||||||||| ||||||| || ||||||||||||||||||| || | |||||| || |||||| | ||||||||||||| ||||||||||| ||| | |
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| T |
27645868 |
ggaaaaagctatgtatagcgaaaagttttctcgcgacaacaccatgacgtgtactgtattcaagcctagttattattcacacccccatgtatttagccaa |
27645769 |
T |
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| Q |
261 |
caacccatgaattgttccaaaatgcagatct |
291 |
Q |
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| T |
27645768 |
ccactcatgcattgtgccaaaacgcagatct |
27645738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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