View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4752_low_23 (Length: 287)
Name: NF4752_low_23
Description: NF4752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4752_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 27713708 - 27713979
Alignment:
| Q |
1 |
agcatatggtatagcaaatattaagggtgaaaatatccaatgattgataaaatatgtgctggttgtgtagagtataccataaaggagcgctggttgaaat |
100 |
Q |
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| T |
27713708 |
agcatatggtatagcaaatattaagggtgaaaatatccaatgattgataaaatatgtgctggttgtgtagagtataccattaaggagcgctggttgaaat |
27713807 |
T |
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| Q |
101 |
attaagggtgaaaatatcaacatgcatgtgagttcacttagtcatgccaagttttcaattgttgaatttgtttaatatcatggagcctcttaagtcaatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
27713808 |
attaagggtgaaaatatcaacatgcatgtgagttcacttagtcatgccaagttttcaattgttgaatttgtttaatatcatcgagcctcttaagtcaatg |
27713907 |
T |
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| Q |
201 |
gagttacaaatttttcttttcaagattcaaacgaaggaaaaactcaatttgatttctattgaagagcttgtt |
272 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27713908 |
gagttagaaatttttcttttcaagattcaaacgaaggaaaaactcaatttgatttctattgaagagcttgtt |
27713979 |
T |
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