View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4752_low_26 (Length: 261)
Name: NF4752_low_26
Description: NF4752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4752_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 34 - 244
Target Start/End: Complemental strand, 53983356 - 53983146
Alignment:
| Q |
34 |
aatggtttaaacgacactacaagaaattgttattaagtggtgtttgattagctacggttaaaacctacaaagttatgaagatgatggtcaacactatgaa |
133 |
Q |
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| T |
53983356 |
aatggtttaaacgacactacaagaaattgttattaagtggtgtttgattagcaacggttaaaacctacaaagttatgaagatgatggtcaacactatgaa |
53983257 |
T |
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| Q |
134 |
cttctagaaatatttcaaaaacaattgaattttaaaatcactcaaatgtgcataaaaaactcaactaatggaagaattatgcacacaattaagtgcgaaa |
233 |
Q |
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| T |
53983256 |
cttctagaaatatttcaaaaacaattgaattttaaaatcactcaaatgtgcataaaaaactcaactaatggaagaattatgcacacaattaagtgcgaaa |
53983157 |
T |
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| Q |
234 |
aatcatcatat |
244 |
Q |
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| T |
53983156 |
aatcatcatat |
53983146 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 25121077 - 25121029
Alignment:
| Q |
101 |
caaagttatgaagatgatggtcaacactatgaacttctagaaatatttc |
149 |
Q |
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| T |
25121077 |
caaagttatgaagataatgatgaacactatgaacttctggaaatttttc |
25121029 |
T |
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