View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4752_low_33 (Length: 239)
Name: NF4752_low_33
Description: NF4752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4752_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 48085113 - 48084892
Alignment:
| Q |
1 |
atatatagatagagttggtcaaagtcaaacaatttaaaggaatatgaatattgcattacactactacataccataagcttgagggttggtaatgtaatcc |
100 |
Q |
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| T |
48085113 |
atatatagatagagttggtcaaagtcaaacaatttaaaggaatatgaatatggcattacactactacataccataagcttgagggttggtaatgtaatcc |
48085014 |
T |
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| Q |
101 |
atgtgcattctataagcatcagcagcaacgaagatgtcagagccaatctcttggtttagtgatctgatcatgtcaacaagttgaggattgtataaagatg |
200 |
Q |
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| T |
48085013 |
atgtgcattctatatgcatcagcagcaacaaagatgtcagagccaatctcttggtttagtgatctgatcatgtcaacaagttgaggattgtataaggatg |
48084914 |
T |
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| Q |
201 |
cagctctctcaagttccacact |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
48084913 |
cagctctctcaagttccacact |
48084892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 220
Target Start/End: Original strand, 35376524 - 35376678
Alignment:
| Q |
66 |
acataccataagcttgagggttggtaatgtaatccatgtgcattctataagcatcagcagcaacgaagatgtcagagccaatctcttggtttagtgatct |
165 |
Q |
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| T |
35376524 |
acataccaaaagcttgagggttggtaataaaatccatgtgcatttgacgtgcattagcagcaatgaagacatcagaaccaatctctgtgttgagttcttt |
35376623 |
T |
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| Q |
166 |
gatcatgtcaacaagttgaggattgtataaagatgcagctctctcaagttccaca |
220 |
Q |
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| T |
35376624 |
gatcatttcgacaagttgtggattatataaggaggcagctctcacgagttccaca |
35376678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 208
Target Start/End: Original strand, 35357946 - 35358088
Alignment:
| Q |
66 |
acataccataagcttgagggttggtaatgtaatccatgtgcattctataagcatcagcagcaacgaagatgtcagagccaatctcttggtttagtgatct |
165 |
Q |
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|||||||| |||||| |||||||||||| |||||||||||||| ||| |||| | |||||| ||||| ||| ||||||||| ||| ||| | | |
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| T |
35357946 |
acataccaaaagctttagggttggtaataaaatccatgtgcattttatgtgcattaacagcaatgaagacatcatcaccaatctctctgttgagttgtgt |
35358045 |
T |
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| Q |
166 |
gatcatgtcaacaagttgaggattgtataaagatgcagctctc |
208 |
Q |
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| T |
35358046 |
gatcatttgaacaagttgtggattatataaggacgcagctctc |
35358088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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