View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4752_low_5 (Length: 495)
Name: NF4752_low_5
Description: NF4752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4752_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 397; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 17 - 485
Target Start/End: Complemental strand, 776790 - 776322
Alignment:
| Q |
17 |
attaagtgcatacaataaagaaaatatggcattcttgaaagttgcattgttcggattttcaatgttatcaggatctaattatattgaattcattgaggaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
776790 |
attaagtgcatacaataaagaaaatatggcattcttgaaagttgtattgttcggattttcaatgttatcaggatctaattatattgaattcattgaggaa |
776691 |
T |
|
| Q |
117 |
ttccagatgcaccgtgttgtttttgtgtgctttgaacttttgacttaatcttgatatgagtttctctaatacaagttaatgtttgaaacaactagtcttt |
216 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
776690 |
ttcca----caccgtgttgtttttgtgtgctttgaacttttgacttaatcttgatatgagtttctctaatacaagttaatgtttgaaacaactagtcttt |
776595 |
T |
|
| Q |
217 |
tgacccgtgca-----gcaaaaacgaataagttataacaaaataaatatatagtatctgatagaagtagtcagataaatattaaacatggatattatata |
311 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||| |
|
|
| T |
776594 |
tgacccgtgcaatagagcaaaaacgaatatgttataacaaaataaatatatagtatctgatagaaatagtttgataagtattaaacatggatattatata |
776495 |
T |
|
| Q |
312 |
gtaatgataacatatttataatatatcgtagtctaattattgttaaagttttatgttcatcattatacattacaaaatatttcatgataaacgtcatttg |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
776494 |
gtaatgataacatatttataatatatcgtagtctaattattgttaaagttttatg-tcatcattatacattacaaaatatttcatgataaacgtcatttg |
776396 |
T |
|
| Q |
412 |
agatcgtcgtggtatattgtcaccatctttatccgtcattactatcttcaatccatctcttaaagtgacctttg |
485 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
776395 |
agatcgtagtggtatattgtcaccatctttatcagtcattactatcttcaatccatctcttaaagtgacctttg |
776322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 227 - 485
Target Start/End: Original strand, 32812505 - 32812763
Alignment:
| Q |
227 |
agcaaaaacgaataagttataacaaaataaatatatagtatctgatagaagtagtcagataaatattaaacatggatattatatagtaatgataacatat |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32812505 |
agcaaaaacgaataagttataacaaaataaatatatagtatatgatagaagtagtctgataaatattaaacatggatattatatagtaatgataacatat |
32812604 |
T |
|
| Q |
327 |
ttataatatatcgtagtctaattattgttaaagttttatgttcatcattatacattacaaaatatttcatgataaacgtcatttgagatcgtcgtggtat |
426 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
32812605 |
ttataatatatcgtagtctaattattgttaaagttttatgttcatcattatacattacaaaatatttcatgataaacgtcatttgagatcgtagtggtat |
32812704 |
T |
|
| Q |
427 |
attgtcaccatctttatccgtcattactatcttcaatccatctcttaaagtgacctttg |
485 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
32812705 |
attgtcaccatctttatcagtcattactatcttcaatccaactcttaaagtgacctttg |
32812763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 340 - 412
Target Start/End: Original strand, 5739612 - 5739684
Alignment:
| Q |
340 |
tagtctaattattgttaaagttttatgttcatcattatacattacaaaatatttcatgataaacgtcatttga |
412 |
Q |
| |
|
||||||| ||||| |||| |||||| |||||||| |||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
5739612 |
tagtctagttattattaacgttttacattcatcatcatacattacaaaatatttcatggtaaacgacatttga |
5739684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 340 - 412
Target Start/End: Original strand, 5776724 - 5776796
Alignment:
| Q |
340 |
tagtctaattattgttaaagttttatgttcatcattatacattacaaaatatttcatgataaacgtcatttga |
412 |
Q |
| |
|
||||||| ||||| |||| |||||| |||||||| |||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
5776724 |
tagtctagttattattaacgttttacattcatcatcatacattacaaaatatttcatggtaaacgacatttga |
5776796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 346 - 413
Target Start/End: Complemental strand, 47309410 - 47309343
Alignment:
| Q |
346 |
aattattgttaaagttttatgttcatcattatacattacaaaatatttcatgataaacgtcatttgag |
413 |
Q |
| |
|
||||||||||||| ||||| ||||||||| |||||||||||||| ||| |||||||| |||||||| |
|
|
| T |
47309410 |
aattattgttaaatttttacgttcatcatcatacattacaaaatgcttcgtgataaacaacatttgag |
47309343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 327
Target Start/End: Original strand, 29692702 - 29692772
Alignment:
| Q |
257 |
atatatagtatctgatagaagtagtcagataaatattaaacatggatattatatagtaatgataacatatt |
327 |
Q |
| |
|
|||||||||||| |||||||| || |||||| |||||||||||||||||| || |||||| ||||||| |
|
|
| T |
29692702 |
atatatagtatccaatagaagttgtatgataaaatttaaacatggatattatacagcaatgatcacatatt |
29692772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 412
Target Start/End: Complemental strand, 43784857 - 43784785
Alignment:
| Q |
340 |
tagtctaattattgttaaagttttatgttcatcattatacattacaaaatatttcatgataaacgtcatttga |
412 |
Q |
| |
|
||||||| |||||||||| |||||| |||||||| |||| |||| |||||||||||| |||||| ||||||| |
|
|
| T |
43784857 |
tagtctagttattgttaatgttttacattcatcatcatacgttacgaaatatttcatggtaaacgacatttga |
43784785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 340 - 412
Target Start/End: Complemental strand, 9795070 - 9794998
Alignment:
| Q |
340 |
tagtctaattattgttaaagttttatgttcatcattatacattacaaaatatttcatgataaacgtcatttga |
412 |
Q |
| |
|
||||||| |||||||||| |||||| || ||||| ||| |||| |||||||||||| |||||| ||||||| |
|
|
| T |
9795070 |
tagtctagttattgttaacgttttacatttatcatcatatgttacgaaatatttcatggtaaacgacatttga |
9794998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 412
Target Start/End: Complemental strand, 23761217 - 23761145
Alignment:
| Q |
340 |
tagtctaattattgttaaagttttatgttcatcattatacattacaaaatatttcatgataaacgtcatttga |
412 |
Q |
| |
|
||||||| |||||||||| |||||| |||||||| |||| |||| |||||||||||| |||||| ||||||| |
|
|
| T |
23761217 |
tagtctagttattgttaacgttttacattcatcatcatacgttacgaaatatttcatggtaaacgacatttga |
23761145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 412
Target Start/End: Complemental strand, 26666021 - 26665952
Alignment:
| Q |
343 |
tctaattattgttaaagttttatgttcatcattatacattacaaaatatttcatgataaacgtcatttga |
412 |
Q |
| |
|
|||| |||||||||| |||||| |||||||| |||| |||| |||||||||||| | |||| ||||||| |
|
|
| T |
26666021 |
tctagttattgttaacgttttacattcatcatcatacgttacgaaatatttcatggttaacgacatttga |
26665952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University