View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4752_low_7 (Length: 482)
Name: NF4752_low_7
Description: NF4752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4752_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 12 - 467
Target Start/End: Original strand, 29380912 - 29381367
Alignment:
| Q |
12 |
atgagatgaatcataagtataacagaaaagcagtccatatgcaatcgacttccagcgtattctcggtaaaattcttgacaaatcattcatagattttaat |
111 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
29380912 |
atgacatgaatcataagtataacagaaaagcagtccatatgcaatcgacttccagcgtattctcggtaaaattcttgacaaatcattcatggattttaat |
29381011 |
T |
|
| Q |
112 |
aaaatggctcatactcacgtcagggcttgtttgtttcttttgtatcaacatgtctccaagggttgagagcttctctaattgcttgagcttctgaagaatt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29381012 |
aaaatggctcatactcacgtcagggcttgtttgtttcttttgtatcaacatgtctccaagggttgagagcttctctaattgcttgagcttctggagaatt |
29381111 |
T |
|
| Q |
212 |
ctccaaggcgcgcttttctgactccaaaacagttactttgtcatctgcacaatgcaaaaaagtgaaacagattcaaactttgtaaacctaaatcctttga |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29381112 |
ctccaaggcgcgcttttctgactccaaaacagttactttatcatctgcacaatgcaaaaaagtgaaacagattcaaactttgtaaacctaaatcctttga |
29381211 |
T |
|
| Q |
312 |
tgatgacaaaattcaatagaggaagcaaaatcctcgagaaagcaattattgaaaataaatatcctctacatatgcaaaatatcgacttaattgggcaatt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29381212 |
tgatgacaaaattcaatagaggaagcaaaatcctcgagaaagcaattattgaaaataaatatcctctacatatgcaaaatatcgacttaattgggcaatt |
29381311 |
T |
|
| Q |
412 |
tgaccaaaataaattatgtaaaagatacaggggactttgtttaaatggatgtaaat |
467 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29381312 |
tgaccaaaataaattatgtaaaagatacaggggactttgtttaaatggatgtaaat |
29381367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 17 - 467
Target Start/End: Original strand, 22573 - 23022
Alignment:
| Q |
17 |
atgaatcataagtataacagaaaagcagtccatatgcaatcgacttccagcgtattctcggtaaaattcttgacaaatcattcatagattttaataaaat |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||| |
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| T |
22573 |
atgaatcataagtataacagaaaagcagtccatatgcaatcaacttccagcgtattctctgtaaaattcttgacgaatcattcatggattttaataaaat |
22672 |
T |
|
| Q |
117 |
ggctcatactcacgtcagggcttgtttgtttcttttgtatcaacatgtctccaagggttgagagcttctctaattgcttgagcttctgaagaattctcca |
216 |
Q |
| |
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|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
22673 |
ggttcatactcgcgtcagggcttgtttgtttcttttgtatcaacatgtctccaagggttgagagcttctctaattgcttgagcttctggagaattctcca |
22772 |
T |
|
| Q |
217 |
aggcgcgcttttctgactccaaaacagttactttgtcatctgcacaatgcaaaaaagtgaaacagattcaaactttgtaaacctaaatcctttgatgatg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
22773 |
aggcgcgcttttctgactccaaaacagttactttgtcatctgcacaatgcaaaaaagtgaaacagattcaaactttctaaacctaaatcctttgatgatg |
22872 |
T |
|
| Q |
317 |
acaaaattcaatagaggaagcaaaatcctcgagaaagcaattattgaaaataaatatcctctacatatgcaaaatatcgacttaattgggcaatttgacc |
416 |
Q |
| |
|
|| ||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
22873 |
-cagaattcaagagagcaagcaaaatcctcgagaaagcaattattgaaaacaaatatcctcaacatatgcaaaatatcgacttaattgagcaatttgacc |
22971 |
T |
|
| Q |
417 |
aaaataaattatgtaaaagatacaggggactttgtttaaatggatgtaaat |
467 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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|
| T |
22972 |
aaaataaattatgtaaaagacacaggggactttgtttaaattgatgtaaat |
23022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 17 - 356
Target Start/End: Original strand, 21345842 - 21346182
Alignment:
| Q |
17 |
atgaatcataa-gtataacagaaaagcagtccatatgcaatcgacttccagcgtattctcggtaaaattcttgacaaatcattcatagattttaataaaa |
115 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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|
| T |
21345842 |
atgaatcataaagtataacagaaaagcagtccatatgcaatcaacttccagcgtattctcggtaaaattcttgacgcatcattcatggattttaataaaa |
21345941 |
T |
|
| Q |
116 |
tggctcatactcacgtcagggcttgtttgtttcttttgtatcaacatgtctccaagggttgagagcttctctaattgcttgagcttctgaagaattctcc |
215 |
Q |
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||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
21345942 |
tggttcatactcgcgttagggcttgtttgtttcttttgtatcaacatgtctccaagggttgagagcttctctaattgcttgagcatctggagaattctcc |
21346041 |
T |
|
| Q |
216 |
aaggcgcgcttttctgactccaaaacagttactttgtcatctgcacaatgcaaaaaagtgaaacagattcaaactttgtaaacctaaatcctttgatgat |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
21346042 |
aaggcgcgcttttctgactccaaaacagttactttgtcatctgcacaatgcaaaaaagtgaaacagattcaaactttctaaacctaaatcctttgatgat |
21346141 |
T |
|
| Q |
316 |
gacaaaattcaatagaggaagcaaaatcctcgagaaagcaa |
356 |
Q |
| |
|
|||| ||||||| |||| ||||||||||||||||||||||| |
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| T |
21346142 |
gacagaattcaaaagagcaagcaaaatcctcgagaaagcaa |
21346182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 467
Target Start/End: Original strand, 21346180 - 21346232
Alignment:
| Q |
416 |
caaaataaatt-atgtaaaagatacaggggactttgtttaaatggatgtaaat |
467 |
Q |
| |
|
||||||||||| |||||||||| | |||||||||||||||||| ||||||||| |
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|
| T |
21346180 |
caaaataaattgatgtaaaagacagaggggactttgtttaaattgatgtaaat |
21346232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 437
Target Start/End: Original strand, 3990319 - 3990372
Alignment:
| Q |
384 |
tgcaaaatatcgacttaattgggcaatttgaccaaaataaattatgtaaaagat |
437 |
Q |
| |
|
|||||||||| |||||||||| | ||||| |||||||||||| || |||||||| |
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|
| T |
3990319 |
tgcaaaatatggacttaattgagaaatttcaccaaaataaataatttaaaagat |
3990372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 442
Target Start/End: Original strand, 14647031 - 14647087
Alignment:
| Q |
386 |
caaaatatcgacttaattgggcaatttgaccaaaataaattatgtaaaagatacagg |
442 |
Q |
| |
|
|||||||| |||||| ||||| |||||||||||| | |||||| ||||||| ||||| |
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|
| T |
14647031 |
caaaatatggacttagttgggaaatttgaccaaattgaattatctaaaagacacagg |
14647087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 386 - 442
Target Start/End: Original strand, 31806596 - 31806652
Alignment:
| Q |
386 |
caaaatatcgacttaattgggcaatttgaccaaaataaattatgtaaaagatacagg |
442 |
Q |
| |
|
|||||||| |||||| ||||| |||||||||||| | |||||| ||||||| ||||| |
|
|
| T |
31806596 |
caaaatatggacttagttgggaaatttgaccaaattgaattatctaaaagacacagg |
31806652 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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