View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4753-Insertion-1 (Length: 970)
Name: NF4753-Insertion-1
Description: NF4753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4753-Insertion-1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 400; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 7 - 536
Target Start/End: Original strand, 13308722 - 13309265
Alignment:
| Q |
7 |
aggaagaaatggcaatgatggggcatgaccattttgggataactatgaacaatggtgacatcatgcaaagacaattatttatgaatttgatgatgaatga |
106 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13308722 |
aggaagaaatggcaatgatgggccatgaccattttgggataactatgagcaatggtgacatcatgcaaagacaattatttatgaatttgatgatgaatga |
13308821 |
T |
|
| Q |
107 |
taatagagatgagaatgtcccatttggtcatcctcatgatgctagtcttcaaaatggattttggcctaatctactaccttgaataagatgatgtgtttgt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
13308822 |
taatagagatgagaatgtcccatttggtcatcctcatgatgctagtcttcaaaatggattttggcctaatctactaccttgaatgagatgatgtgtttgt |
13308921 |
T |
|
| Q |
207 |
ttttcaaaccttttgagttggatttgctccaatttagtctcaa----------ttggatgatttggtcttactttatttgggtgtatgtgaagacacaac |
296 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
13308922 |
ttttcaaaccttttgaggtggatttgttccaatttagtctcaattcttaattcttggatgatttggtcttactttatttgggtgcatgtgaagacacaat |
13309021 |
T |
|
| Q |
297 |
cgtaagtcattattgtgcaatcttcacatctttatttcctatatgtgatttagtcctattgtgtggcttaggcttcacatggttatttatatg------- |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13309022 |
cgtaagtcattattgtgcaatcttcacatctttatttcctatatgtgatttagtcctattgtgtggcttaggcttcacatggttatttatatgctttttt |
13309121 |
T |
|
| Q |
390 |
nnnnnnnncttctaaattactattgtttaagaaagtttgatgtactagtttgattgaataaaaaagtccatcattgtgttgttgtcgacactgctgcagt |
489 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||| |
|
|
| T |
13309122 |
tttctttctttctaaattactattgttcaagaaagtttgatgtactagtttgattgaataaaaaagtctattattgtgttgttgtcgacactgttgcagt |
13309221 |
T |
|
| Q |
490 |
aaccattagttatgaatactactagtaatatttattaacaactacca |
536 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
13309222 |
aaccattagttatgaa---tactagtaatatttattaacaactacca |
13309265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 541 - 775
Target Start/End: Original strand, 13315604 - 13315838
Alignment:
| Q |
541 |
tgatggaaatttgagcgaaagtgatcttgaagatctgtctttacttattgatgagaacttaaaagaaatcaaacaaaagattgaatcgatttaagcccaa |
640 |
Q |
| |
|
||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
13315604 |
tgatgaaaatttgagcgagagtgatctcgaagatctgtctttacttattgatgagaacttaacagaaatcaaacaaaagattgaatcgattcaagcccaa |
13315703 |
T |
|
| Q |
641 |
acctaagaccaaatggaggttggaagtgaagttgaacatgtgactggaacagggtaataggcccccaaggtcttacccaaatggactttggtctatctag |
740 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
13315704 |
acctaagaccaaatggaggttggaagtgaagttgaacatgtgactggaacagggtaataggcccccaatgtcttacccaaatggactttggtctatctag |
13315803 |
T |
|
| Q |
741 |
tttatattttttatgaagataatctttagtccatc |
775 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||| |
|
|
| T |
13315804 |
tttatactttttatgaaaataatctttagtccatc |
13315838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 863 - 969
Target Start/End: Original strand, 13315927 - 13316032
Alignment:
| Q |
863 |
gtttcaaatatgtaggctttatatgtcacgagtcttg-ttgagccttgaattcccttatctcttttcattttgtacatatttcccgttcacttctttgtt |
961 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||| |||||||| ||||||||| |||||| |||||||||||||| |
|
|
| T |
13315927 |
gtttcaaatatgtaggctttatatgttacgagtcttgtttgagccttaaattcccttatgtcttttca-tttgtacatctttccc-ttcacttctttgtt |
13316024 |
T |
|
| Q |
962 |
ctttttag |
969 |
Q |
| |
|
|||||||| |
|
|
| T |
13316025 |
ctttttag |
13316032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 9894860 - 9894797
Alignment:
| Q |
13 |
aaatggcaatgatggggcatgaccattttgggataactatgaacaatggtgacatcatgcaaag |
76 |
Q |
| |
|
|||||||||||||||| |||| | || ||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
9894860 |
aaatggcaatgatgggtcatggctatgttgggatgactatgaacaatggtgacatcatggaaag |
9894797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 11100173 - 11100249
Alignment:
| Q |
9 |
gaagaaatggcaatgatggggcatgaccattttgggataactatgaacaatggtgacatcatgcaaagacaattatt |
85 |
Q |
| |
|
|||||||||||||| ||||| ||| |||| |||||||| |||| || |||| |||||| ||||||||||||||||| |
|
|
| T |
11100173 |
gaagaaatggcaattatgggtgatggccatgttgggatacctattaataatgatgacattatgcaaagacaattatt |
11100249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 133
Target Start/End: Complemental strand, 11247883 - 11247759
Alignment:
| Q |
9 |
gaagaaatggcaatgatggggcatgaccattttgggataactatgaacaatggtgacatcatgcaaagacaattatttatgaatttgatgatgaatgata |
108 |
Q |
| |
|
||||||||||||| |||||| |||| |||| |||||| ||| |||| |||||||| ||||| |||| ||| | || ||| ||||||||||||| || |
|
|
| T |
11247883 |
gaagaaatggcaaggatgggtcatggccatgctgggatgactgtgaataatggtgaaatcattgaaagtcaacttttgatgggcttgatgatgaatggta |
11247784 |
T |
|
| Q |
109 |
atagagatgagaatgtcccatttgg |
133 |
Q |
| |
|
|| ||||||||| || |||||||| |
|
|
| T |
11247783 |
atggagatgagacagttccatttgg |
11247759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University