View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4753-Insertion-10 (Length: 529)

Name: NF4753-Insertion-10
Description: NF4753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4753-Insertion-10
NF4753-Insertion-10
[»] chr5 (15 HSPs)
chr5 (7-529)||(14391095-14391621)
chr5 (7-330)||(14397379-14397711)
chr5 (396-529)||(14397740-14397873)
chr5 (86-367)||(16024441-16024735)
chr5 (184-341)||(14393060-14393223)
chr5 (478-525)||(13857634-13857681)
chr5 (21-68)||(16024844-16024891)
chr5 (7-82)||(14392839-14392914)
chr5 (18-67)||(40165857-40165906)
chr5 (482-525)||(13866153-13866196)
chr5 (487-525)||(14358599-14358637)
chr5 (403-441)||(16024335-16024373)
chr5 (137-214)||(13883931-13884008)
chr5 (7-59)||(13871875-13871927)
chr5 (483-515)||(16021913-16021945)
[»] chr8 (1 HSPs)
chr8 (145-243)||(29625322-29625420)


Alignment Details
Target: chr5 (Bit Score: 455; Significance: 0; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 7 - 529
Target Start/End: Original strand, 14391095 - 14391621
Alignment:
Q  7 accaagaatagtcaaatccatagttcaaaagcgaaagagaagagggtgtgttatctccaaatagataactttgcagggggaagaaatttgtggtgaagcc 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  14391095 accaagaatagtcaaatccatagttcaaaagcgaaagagaagagggtgtgttatctccaaatagataattttgcagggggaagaaatttgtggtaaagcc 14391194  T
Q  107 agagaagaaaattatatggaaatgatgaagggggtagaaagtcctcataggtcgtccgaggacaatgaaaaaggttctgaaaatgtttatgtttctggaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  14391195 agagaagaaaattatatggaaatgatgaagggggtagaaagtcctcataggtcatccgaggacaatgaaaaaggttctaaaaatgtttatgtttctggaa 14391294  T
Q  207 tcgaatctaatgatggtgaggagtgttctcgagaagagcacacgatggagaacatgataataaggctgaaggtgaagttgaaggaatagctgatgcccat 306  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14391295 tcgaatctaatgatggtgagtagtgttctcgagaagagcacgcgatggagaacatgataataaggctgaaggtgaagttgaaggaatagctgatgcccat 14391394  T
Q  307 gttgaagaagatggaatgtcattgccattttctgagcgatttcttccaagtgtgaagccatcggctaggcattgtca----nnnnnnnnnatagaaaggt 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||             ||||||||||    
T  14391395 gttgaagaagatggaatgtcattgccattttctgagcgatttcttccaagtgtgaagccatcggctaggcattatcatttttatttatttatagaaaggt 14391494  T
Q  403 ctccttttatgtgctgattagacttcagcaggtacaaaaatatatagtttcaatttgtacaagcagcacagttaagttatatgtatgtcattcttcataa 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14391495 ctccttttatgtgctgattagacttcagcaggtacaaaaatatatagtttcaatttgtacaagcagcacagttaagttatatgtatgtcattcttcataa 14391594  T
Q  503 acaagcctaatgtagtgattttgtaca 529  Q
    |||||||||||||||||||||||||||    
T  14391595 acaagcctaatgtagtgattttgtaca 14391621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 7 - 330
Target Start/End: Original strand, 14397379 - 14397711
Alignment:
Q  7 accaagaatagtcaaatccatagttcaaaagcgaaagagaagagggtgtgttatctccaaatagataactttgcagggggaagaaatttgtggtgaagcc 106  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||| ||||||||||||      
T  14397379 accaagaataatcaaatcgatagttcaaaagcgaaagagaagagggtgtgttatctccatatagataattttgcagggg-aagaagtttgtggtgaagga 14397477  T
Q  107 agagaagaaaattatatgga----aatgatgaagggggtagaaagtcctcataggtcgtccgaggacaatgaaaaaggttctgaaaatgtttatgtttct 202  Q
     |||||||||||||||||||    |||||||||||||  |||||||||||||||||| || |||||||||||||| |||||||||||||||  ||||||     
T  14397478 ggagaagaaaattatatggatcttaatgatgaagggga-agaaagtcctcataggtcatcggaggacaatgaaaatggttctgaaaatgttgttgtttca 14397576  T
Q  203 ggaatcgaatctaatgatggtgaggagtgttctcgagaagagcac-acgatggagaacatgataataaggc------tgaaggtgaagttgaaggaatag 295  Q
    ||||  ||||||| | ||||||||||||||||||||||||||| | ||||||||||| |||||||||||||      ||||||||| | ||||||||| |    
T  14397577 ggaagtgaatctactaatggtgaggagtgttctcgagaagagcgcgacgatggagaatatgataataaggctcaaggtgaaggtgaggctgaaggaatgg 14397676  T
Q  296 ctgatgcccatgttgaagaagatggaatgtcattg 330  Q
    ||||||||  |||||||| ||||| ||||| ||||    
T  14397677 ctgatgccggtgttgaaggagatgaaatgtaattg 14397711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 396 - 529
Target Start/End: Original strand, 14397740 - 14397873
Alignment:
Q  396 gaaaggtctccttttatgtgctgattagacttcagcaggtacaaaaatatatagtttcaatttgtacaagcagcacagttaagttatatgtatgtcattc 495  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  14397740 gaaaggtctccttttatgtgctggttagacttcagcaggtacaaaaatatattgtttcaatttgtacaggcagcacagttaagttatatgtatgtcattc 14397839  T
Q  496 ttcataaacaagcctaatgtagtgattttgtaca 529  Q
    ||||||||||||| |||||| |||||||||||||    
T  14397840 ttcataaacaagcttaatgttgtgattttgtaca 14397873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 86 - 367
Target Start/End: Complemental strand, 16024735 - 16024441
Alignment:
Q  86 gaagaaatttgtggtgaagccagagaagaaaattat----atggaaatgatgaagggggtagaaagtcctcataggtcgtccgaggacaatgaaaaaggt 181  Q
    |||||| |||||||||||||||||| ||||||||||    |||   ||||||||||||  |||||||||||| ||||| || |||| || |||||| | |    
T  16024735 gaagaagtttgtggtgaagccagaggagaaaattatgcagatgctgatgatgaagggga-agaaagtcctcagaggtcatcagagggcagtgaaaacgct 16024637  T
Q  182 tctgaaaatgtttatgtttctggaatcgaatctaatgatggtgaggagtgttctcgagaagagca-cacgatggagaacatgataataaggc------tg 274  Q
    |||| ||| ||| ||||||||||||  ||||||  |||||| |||||||| |||| |||||||||  | ||||||||||||||| |||||||      ||    
T  16024636 tctggaaacgttgatgtttctggaagtgaatctgctgatggagaggagtgctctcaagaagagcatgatgatggagaacatgatgataaggctgaaagtg 16024537  T
Q  275 aaggtgaagttgaaggaatagctgatgccc---atgttgaagaagatggaatgtcattgccattttctgagcgatttcttccaagtgtgaagccat 367  Q
    ||||||||| ||||||||| |||||||| |   ||||||||| ||||||||  ||||| ||||||||||| || ||||||| || |||||||||||    
T  16024536 aaggtgaagctgaaggaatggctgatgcacatgatgttgaaggagatggaacatcattaccattttctgaacgctttcttctaaatgtgaagccat 16024441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 184 - 341
Target Start/End: Original strand, 14393060 - 14393223
Alignment:
Q  184 tgaaaatgtttatgtttctggaatcgaatctaatgatggtgaggagtgttctcgagaagagcaca-cgatggagaacatgataataaggctgaaggtgaa 282  Q
    |||||||||| |||||| ||||| ||||| ||  |||||||||||||||||||||||| |||| |  |||||||||| ||||| |||||||||| |||||    
T  14393060 tgaaaatgttgatgtttttggaagcgaatatacagatggtgaggagtgttctcgagaaaagcatagggatggagaacgtgatagtaaggctgaaagtgaa 14393159  T
Q  283 gttgaag-----gaatagctgatgcccatgttgaagaagatggaatgtcattgccattttctga 341  Q
    | |||||       || ||| |||||| |||||||| |||||||||||||||||||||||||||    
T  14393160 ggtgaagctaaatgatggctaatgcccctgttgaaggagatggaatgtcattgccattttctga 14393223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 478 - 525
Target Start/End: Complemental strand, 13857681 - 13857634
Alignment:
Q  478 gttatatgtatgtcattcttcataaacaagcctaatgtagtgattttg 525  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
T  13857681 gttatatgtatgtcattcttcataaacaagcctaatgtcgtgattttg 13857634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 16024891 - 16024844
Alignment:
Q  21 aatccatagttcaaaagcgaaagagaagagggtgtgttatctccaaat 68  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||    
T  16024891 aatccacagttcaaaagcgaaagagaagagggtgagttatctccaaat 16024844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 14392839 - 14392914
Alignment:
Q  7 accaagaatagtcaaatccatagttcaaaagcgaaagagaagagggtgtgttatctccaaatagataactttgcag 82  Q
    |||||||| | ||||||| ||||||||||||| ||||||||||||| | || ||||||||||  |||| |||||||    
T  14392839 accaagaagaatcaaatcgatagttcaaaagcaaaagagaagagggagagtcatctccaaatccataattttgcag 14392914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 40165857 - 40165906
Alignment:
Q  18 tcaaatccatagttcaaaagcgaaagagaagagggtgtgttatctccaaa 67  Q
    ||||||| | ||||||||||||||| ||||||||||| ||||||||||||    
T  40165857 tcaaatcgacagttcaaaagcgaaaaagaagagggtgagttatctccaaa 40165906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 482 - 525
Target Start/End: Complemental strand, 13866196 - 13866153
Alignment:
Q  482 tatgtatgtcattcttcataaacaagcctaatgtagtgattttg 525  Q
    |||||||||||||||||||||||| ||| ||||| |||||||||    
T  13866196 tatgtatgtcattcttcataaacaggcccaatgtcgtgattttg 13866153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 487 - 525
Target Start/End: Complemental strand, 14358637 - 14358599
Alignment:
Q  487 atgtcattcttcataaacaagcctaatgtagtgattttg 525  Q
    ||||||||||||||||||||||||||||| ||| |||||    
T  14358637 atgtcattcttcataaacaagcctaatgttgtgcttttg 14358599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 403 - 441
Target Start/End: Complemental strand, 16024373 - 16024335
Alignment:
Q  403 ctccttttatgtgctgattagacttcagcaggtacaaaa 441  Q
    |||||| |||||||||||||||||||| |||||||||||    
T  16024373 ctccttctatgtgctgattagacttcatcaggtacaaaa 16024335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 214
Target Start/End: Complemental strand, 13884008 - 13883931
Alignment:
Q  137 ggggtagaaagtcctcataggtcgtccgaggacaatgaaaaaggttctgaaaatgtttatgtttctggaatcgaatct 214  Q
    |||| ||| |||||||| ||||| || ||||| | | |||| | ||||||||||||| |||||||||||| |||||||    
T  13884008 ggggaagagagtcctcagaggtcatcggaggatagttaaaatgcttctgaaaatgttgatgtttctggaagcgaatct 13883931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 13871927 - 13871875
Alignment:
Q  7 accaagaatagtcaaatccatagttcaaaagcgaaagagaagagggtgtgtta 59  Q
    |||||||||  ||||||| | |||||||||| |||||||||||||||| ||||    
T  13871927 accaagaattatcaaatcgacagttcaaaagtgaaagagaagagggtgagtta 13871875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 483 - 515
Target Start/End: Complemental strand, 16021945 - 16021913
Alignment:
Q  483 atgtatgtcattcttcataaacaagcctaatgt 515  Q
    |||||||||||||||||| ||||||||||||||    
T  16021945 atgtatgtcattcttcattaacaagcctaatgt 16021913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 145 - 243
Target Start/End: Complemental strand, 29625420 - 29625322
Alignment:
Q  145 aagtcctcataggtcgtccgaggacaatgaaaaaggttctgaaaatgtttatgtttctggaatcgaatctaatgatggtgaggagtgttctcgagaaga 243  Q
    |||||||||||| || || || |||| |||||| |  ||||| |||| | |||||||||| | ||| |||  |||||||||||| ||||||||||||||    
T  29625420 aagtcctcatagatcatcagacgacagtgaaaatgcatctgagaatggtgatgtttctggtaccgagtctgctgatggtgaggaatgttctcgagaaga 29625322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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