View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4753-Insertion-11 (Length: 514)

Name: NF4753-Insertion-11
Description: NF4753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4753-Insertion-11
NF4753-Insertion-11
[»] chr3 (11 HSPs)
chr3 (117-194)||(19963848-19963925)
chr3 (117-186)||(20026499-20026568)
chr3 (114-194)||(19743090-19743167)
chr3 (247-316)||(19968382-19968451)
chr3 (216-318)||(20026617-20026719)
chr3 (114-194)||(19968523-19968606)
chr3 (247-316)||(20019830-20019899)
chr3 (123-187)||(20019687-20019751)
chr3 (229-311)||(19963682-19963764)
chr3 (114-194)||(14855678-14855761)
chr3 (247-305)||(14855833-14855891)
[»] chr2 (1 HSPs)
chr2 (115-163)||(3030813-3030861)


Alignment Details
Target: chr3 (Bit Score: 54; Significance: 9e-22; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 117 - 194
Target Start/End: Complemental strand, 19963925 - 19963848
Alignment:
Q  117 cttaccatttgcaactacttcatcatcagaacttgatagttcataaattaataaatgatcctctttatcagaaccttc 194  Q
    ||||| |||| |||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  19963925 cttacgattttcaaccacttcatcatcggaacttgatagttcataaactaataaatgatcctctttatcagaagcttc 19963848  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 117 - 186
Target Start/End: Original strand, 20026499 - 20026568
Alignment:
Q  117 cttaccatttgcaactacttcatcatcagaacttgatagttcataaattaataaatgatcctctttatca 186  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  20026499 cttacgattttcaactacttcatcatcagaacttgatagttcataacctaataaatgatcctctttatca 20026568  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 114 - 194
Target Start/End: Original strand, 19743090 - 19743167
Alignment:
Q  114 agccttaccatttgcaactacttcatcatcagaacttgatagttcataaattaataaatgatcctctttatcagaaccttc 194  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||   | ||  |||||||||||||||||| ||||    
T  19743090 agccttaccatttccaactacttcatcatcagaacttgatagttcataa---actatgtgatcctctttatcagaagcttc 19743167  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 247 - 316
Target Start/End: Complemental strand, 19968451 - 19968382
Alignment:
Q  247 tattgttatctccttcctcaattgattttgattgcttccaccagtcatagaatctagaagtaacatttgg 316  Q
    |||| ||||||||||||||| ||||||| ||||||| |||||| |||||| |||||||||||||||||||    
T  19968451 tattattatctccttcctcacttgatttcgattgctgccaccaatcatagtatctagaagtaacatttgg 19968382  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 216 - 318
Target Start/End: Original strand, 20026617 - 20026719
Alignment:
Q  216 gttatgccataatattcttcattttttattgtattgttatctccttcctcaattgattttgattgcttccaccagtcatagaatctagaagtaacatttg 315  Q
    |||| ||||||| ||||||||  ||||||| || |||||| |||||| ||  | ||| |||||||||||||||| |||||| |||||||||||||| |||    
T  20026617 gttaggccataagattcttcaacttttattctactgttatttccttcatccctagatattgattgcttccaccaatcatagtatctagaagtaacacttg 20026716  T
Q  316 gct 318  Q
    |||    
T  20026717 gct 20026719  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 114 - 194
Target Start/End: Complemental strand, 19968606 - 19968523
Alignment:
Q  114 agccttaccatttgcaactacttcatcatca---gaacttgatagttcataaattaataaatgatcctctttatcagaaccttc 194  Q
    ||||||||||||| |||||||||||||||||   ||||||||||||||||||| ||||   |||||||||| ||||||| ||||    
T  19968606 agccttaccattttcaactacttcatcatcatcagaacttgatagttcataaactaatttgtgatcctcttcatcagaagcttc 19968523  T

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Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 247 - 316
Target Start/End: Original strand, 20019830 - 20019899
Alignment:
Q  247 tattgttatctccttcctcaattgattttgattgcttccaccagtcatagaatctagaagtaacatttgg 316  Q
    |||| ||||||||||||||| |||||||  |||||| |||||| |||||| |||||||||||||||||||    
T  20019830 tattattatctccttcctcacttgatttcaattgctgccaccaatcatagtatctagaagtaacatttgg 20019899  T

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Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 123 - 187
Target Start/End: Original strand, 20019687 - 20019751
Alignment:
Q  123 atttgcaactacttcatcatcagaacttgatagttcataaattaataaatgatcctctttatcag 187  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||   |||||||||| |||||    
T  20019687 atttccaactacttcatcatcagaacttgatagttcataaactaatttgtgatcctcttcatcag 20019751  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 229 - 311
Target Start/End: Complemental strand, 19963764 - 19963682
Alignment:
Q  229 attcttcattttttattgtattgttatctccttcctcaattgattttgattgcttccaccagtcatagaatctagaagtaaca 311  Q
    ||||||||  ||||||| |||||||||||||||| ||  ||||| |||||||||||||||| |||||| ||||| | ||||||    
T  19963764 attcttcaacttttattctattgttatctccttcatcccttgatattgattgcttccaccaatcatagtatctaaaggtaaca 19963682  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 114 - 194
Target Start/End: Original strand, 14855678 - 14855761
Alignment:
Q  114 agccttaccatttgcaactacttcatcatca---gaacttgatagttcataaattaataaatgatcctctttatcagaaccttc 194  Q
    |||| |||||||| |||||||||||||||||   ||||||||||||||||||| ||||   |||||||||| ||||||| ||||    
T  14855678 agccctaccattttcaactacttcatcatcatcggaacttgatagttcataaactaatttgtgatcctcttcatcagaagcttc 14855761  T

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Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 305
Target Start/End: Original strand, 14855833 - 14855891
Alignment:
Q  247 tattgttatctccttcctcaattgattttgattgcttccaccagtcatagaatctagaa 305  Q
    |||| ||||||||||||||| ||||||| ||||||| |||||| |||||| ||||||||    
T  14855833 tattattatctccttcctcacttgatttcgattgctgccaccaatcatagtatctagaa 14855891  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 3030861 - 3030813
Alignment:
Q  115 gccttaccatttgcaactacttcatcatcagaacttgatagttcataaa 163  Q
    ||||| |||||| ||||| || ||||||||||||||||||| |||||||    
T  3030861 gccttgccattttcaactgctccatcatcagaacttgatagctcataaa 3030813  T

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