View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4753-Insertion-12 (Length: 507)
Name: NF4753-Insertion-12
Description: NF4753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4753-Insertion-12 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 114 - 414
Target Start/End: Original strand, 1119543 - 1119832
Alignment:
| Q |
114 |
tacattatgtgttgaattttaagacaaggttctaatgtttaaaagtagttagtttttgttggatttttaagtgtgagtgattaagtactacttcctctgg |
213 |
Q |
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| T |
1119543 |
tacattatgtgttgaattttaagacaaggttctaatgtttaaaagtagttagtttttgttggatttt-aagtgtgagtgattaagtactacttcctctgg |
1119641 |
T |
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| Q |
214 |
aataaaatatatttttgttgggtttcaaaaatcaattacagttcataatttgacataatttggattatagaatacgaactggtaaaatactgttcagatt |
313 |
Q |
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| T |
1119642 |
aatgaaatatatttttgttgggtttcaaaaatcaattgcagtt----------cataatttggattatagaatatgaactggtaaaatactgttcagatt |
1119731 |
T |
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| Q |
314 |
gtataatctgaaccgtgtcagcacaaaaacaaaacccgtgttcattaattaacactcttttttggtaaattgacgaatcaagtttgatttaaacatgcat |
413 |
Q |
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| T |
1119732 |
gtatagtctgaactgtgtcagcacaaaaacaaaacccgtgttcattagttaaaacttttttttggtaaattgatgaatcaagtttgatttaaacatgcat |
1119831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 413
Target Start/End: Original strand, 857368 - 857484
Alignment:
| Q |
300 |
atactgttcagattgtataatctgaaccgtgtcagcacaaaaacaaaacccgtgttcattaattaacac---tcttttttggtaaattgacgaatcaagt |
396 |
Q |
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| T |
857368 |
atacagttaagattatataatctaaactgtgttagcacataaacataacctgtattaattagttaacaccttttttttttggcaaattgaggaatcaaga |
857467 |
T |
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| Q |
397 |
ttgatttaaacatgcat |
413 |
Q |
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| T |
857468 |
ttgacttaaacatgcat |
857484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 391
Target Start/End: Original strand, 18348180 - 18348331
Alignment:
| Q |
241 |
aaaatcaattacagttcataatttgacataatttggattatagaatacgaactggtaaaatac-tgttcagattgtataatctgaaccgtgtcagcacaa |
339 |
Q |
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| T |
18348180 |
aaaaccaattgcagttcttaagttgatacaatttggattatatcatctaaacttgtaaaatacatatttggattatataattcgaactatgtcagcacaa |
18348279 |
T |
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| Q |
340 |
aaacaaaacccgtgttcattaattaacactcttttttggtaaattgacgaat |
391 |
Q |
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| T |
18348280 |
aaacagaacctgggttcattagttaacacttttttccggcaaattgacgaat |
18348331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 414
Target Start/End: Complemental strand, 29958724 - 29958620
Alignment:
| Q |
310 |
gattgtataatctgaaccgtgtcagcacaaaaacaaaacccgtgttcattaattaaca-ctcttttttggtaaattgacgaatcaagtttgatttaaaca |
408 |
Q |
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| T |
29958724 |
gattatataatatgaaccgtgtcagcacataaacataatttgtcttgattaactaacatcttttttttggtaaattgaggaataaggtttaattt-aaca |
29958626 |
T |
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| Q |
409 |
tgcatc |
414 |
Q |
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| T |
29958625 |
tgcatc |
29958620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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