View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4753-Insertion-13 (Length: 483)

Name: NF4753-Insertion-13
Description: NF4753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4753-Insertion-13
NF4753-Insertion-13
[»] chr5 (4 HSPs)
chr5 (8-207)||(36248775-36248975)
chr5 (371-483)||(36248555-36248667)
chr5 (263-323)||(36248713-36248773)
chr5 (183-273)||(16172945-16173036)
[»] chr2 (2 HSPs)
chr2 (184-296)||(26482093-26482206)
chr2 (184-257)||(6099481-6099555)
[»] scaffold0016 (1 HSPs)
scaffold0016 (242-284)||(77632-77674)
[»] chr4 (2 HSPs)
chr4 (184-277)||(47183341-47183435)
chr4 (183-275)||(25414176-25414269)
[»] chr8 (1 HSPs)
chr8 (183-255)||(6530848-6530921)
[»] chr1 (1 HSPs)
chr1 (187-275)||(44486123-44486212)
[»] chr7 (1 HSPs)
chr7 (241-273)||(26983799-26983831)
[»] chr6 (1 HSPs)
chr6 (214-277)||(9876993-9877057)
[»] chr3 (1 HSPs)
chr3 (184-275)||(43303779-43303871)


Alignment Details
Target: chr5 (Bit Score: 181; Significance: 1e-97; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 8 - 207
Target Start/End: Complemental strand, 36248975 - 36248775
Alignment:
Q  8 gaatttgttgtgaaaactacaatgctatcctagattcgctattgcgaaaataacggccaccattcaggttgattctagctgacttatttaaactactatg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36248975 gaatttgttgtgaaaactacaatgctatcctagattcgctattacaaaaataacggccaccattcaggttgattctagctgacttatttaaactactatg 36248876  T
Q  108 tggcttcctctatcttctattttactaagcagatgtttggcattcctcaatttttcgcaattcactatt-ttttcataagaagccaaactagtccactga 206  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  36248875 tggcttcctctatcttctattttactaagcaaatgtttggcattcctcaatttttcgcaattcactatttttttcataagaagccaaactagtccactga 36248776  T
Q  207 t 207  Q
    |    
T  36248775 t 36248775  T

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Target: chr5; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 371 - 483
Target Start/End: Complemental strand, 36248667 - 36248555
Alignment:
Q  371 cacaattattaaattgttttctagagaaacaagatccccccaatagcttatataaacaaaatgacactagcaaataaataattgaattttaacaacaatt 470  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  36248667 cacaattattaatttgttttctagagaaataagatccccccaatagcttatataaagaaaatgacactagcaaataaataattgaattttaacaacaatt 36248568  T
Q  471 tttcactctatag 483  Q
    |||||||||||||    
T  36248567 tttcactctatag 36248555  T

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Target: chr5; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 263 - 323
Target Start/End: Complemental strand, 36248773 - 36248713
Alignment:
Q  263 caaaccaacaccatccgaccaaactaagttggttgtccgcagttcactattgataacactt 323  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36248773 caaaccaacaccatccgaccaaactaagttggttgtccgcagttcactattgataacactt 36248713  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 273
Target Start/End: Original strand, 16172945 - 16173036
Alignment:
Q  183 taagaagccaaactagtccactgatattggcaccgaggataatcaaatctga-atcttaagaggagcacactccaaagtttcaaaccaacac 273  Q
    |||||||||||||||| | ||||| ||||||| | |||| |||| || |||| | ||| ||||||||||||||||| || |||| |||||||    
T  16172945 taagaagccaaactagcctactgaaattggcaactaggagaatcgaacctgagaccttgagaggagcacactccaaggtctcaagccaacac 16173036  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 184 - 296
Target Start/End: Complemental strand, 26482206 - 26482093
Alignment:
Q  184 aagaagccaaactagtccactgatattggcaccgaggataatcaaatctga-atcttaagaggagcacactccaaagtttcaaaccaacaccatccgacc 282  Q
    ||||||||||| ||| ||||||| |||||||| ||||| |||| || |||| | ||| ||||||||||||||| | ||  ||| ||||||||||| | ||    
T  26482206 aagaagccaaattagcccactgaaattggcactgaggagaatcgaacctgagaccttgagaggagcacactcctaggtcccaagccaacaccatcaggcc 26482107  T
Q  283 aaactaagttggtt 296  Q
    || |||||| ||||    
T  26482106 aacctaagtgggtt 26482093  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 257
Target Start/End: Original strand, 6099481 - 6099555
Alignment:
Q  184 aagaagccaaactagtccactgatattggcaccgaggataatcaaatctga-atcttaagaggagcacactccaa 257  Q
    ||||||||||||||| |||| |||||||||| || ||| |||| || |||| | ||| |||||||||||||||||    
T  6099481 aagaagccaaactagcccaccgatattggcagcggggagaatcgaacctgagaccttgagaggagcacactccaa 6099555  T

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Target: scaffold0016 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 284
Target Start/End: Complemental strand, 77674 - 77632
Alignment:
Q  242 gaggagcacactccaaagtttcaaaccaacaccatccgaccaa 284  Q
    |||||||||||||||||||  ||||||||||||||| ||||||    
T  77674 gaggagcacactccaaagtcccaaaccaacaccatcagaccaa 77632  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 277
Target Start/End: Complemental strand, 47183435 - 47183341
Alignment:
Q  184 aagaagccaaactagtccactgatattggcaccgaggataatcaaatctga-atcttaagaggagcacactccaaagtttcaaaccaacaccatc 277  Q
    ||||||||||||| |||||| || |||| ||||| | | |||| || |||| ||||| |||||| |||||||||| || |||| |||||||||||    
T  47183435 aagaagccaaacttgtccaccgaaattgacaccgggaaaaatcgaacctgagatcttgagaggatcacactccaaggtctcaagccaacaccatc 47183341  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 275
Target Start/End: Original strand, 25414176 - 25414269
Alignment:
Q  183 taagaagccaaactagtccactgatattggcaccgaggataatcaaatctgaatctta-agaggagcacactccaaagtttcaaaccaacacca 275  Q
    |||||||||||||||  ||||  | |||||||||| ||| ||||||| ||||  |||  ||||||||||||||||| || |||| |||||||||    
T  25414176 taagaagccaaactaacccaccaaaattggcaccggggagaatcaaacctgagactttgagaggagcacactccaaggtctcaagccaacacca 25414269  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 6530921 - 6530848
Alignment:
Q  183 taagaagccaaactagtccactgatattggcaccgaggataatcaaatctga-atcttaagaggagcacactcc 255  Q
    ||||| ||||||||||||||| ||||||||||||| ||| |||| || |||| |  || |||||||||||||||    
T  6530921 taagatgccaaactagtccaccgatattggcaccggggagaatcgaacctgagacattgagaggagcacactcc 6530848  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 275
Target Start/End: Original strand, 44486123 - 44486212
Alignment:
Q  187 aagccaaactagtccactgatattggcaccgaggataatcaaatctga-atcttaagaggagcacactccaaagtttcaaaccaacacca 275  Q
    |||||||||||  |||| || |||||||||| ||| |||  ||| ||| | ||| ||||||||||||||||| ||| |||||||||||||    
T  44486123 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggttccaaaccaacacca 44486212  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 241 - 273
Target Start/End: Complemental strand, 26983831 - 26983799
Alignment:
Q  241 agaggagcacactccaaagtttcaaaccaacac 273  Q
    ||||||||||||||||| |||||||||||||||    
T  26983831 agaggagcacactccaaggtttcaaaccaacac 26983799  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 214 - 277
Target Start/End: Complemental strand, 9877057 - 9876993
Alignment:
Q  214 accgaggataatcaaatctga-atcttaagaggagcacactccaaagtttcaaaccaacaccatc 277  Q
    |||||| | |||||||||||| | ||| |||||||||||||||||||| ||||  ||||||||||    
T  9877057 accgagaaaaatcaaatctgataccttgagaggagcacactccaaagtctcaagtcaacaccatc 9876993  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 275
Target Start/End: Complemental strand, 43303871 - 43303779
Alignment:
Q  184 aagaagccaaactagtccactgatattggcaccgaggataatcaaatctga-atcttaagaggagcacactccaaagtttcaaaccaacacca 275  Q
    ||||||||||||||| |||| |||||| |||||| ||| ||||||| |||| | ||  |||||||||| |||||| || |||| ||| |||||    
T  43303871 aagaagccaaactagcccaccgatattagcaccggggagaatcaaacctgagacctggagaggagcacgctccaaggtctcaagccatcacca 43303779  T

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