View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4753-Insertion-15 (Length: 456)
Name: NF4753-Insertion-15
Description: NF4753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4753-Insertion-15 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 126 - 392
Target Start/End: Original strand, 9491887 - 9492144
Alignment:
| Q |
126 |
ttctttagggaaaaatatgctacaaattcttatttaacatgagatatttgcaaaaatatgctacaaattcaatagtagagaaaccttatataactctaaa |
225 |
Q |
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| T |
9491887 |
ttctttagggaaaaatatgctacaaattcttatttaacatgagatatttgcaaaaatatgctacaaattccatagtagagaaaccttatataac------ |
9491980 |
T |
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| Q |
226 |
aattaggggctacatttacaagtttaaatatgaaggactaaaattgtgaatcaaagaaagtaggatgaccatgagtgcatttaagtcgatnnnnnnnnnn |
325 |
Q |
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| T |
9491981 |
---taggggctacatttacaagtttaaatatgaaggactaaaattgtgaatcaaagaaagtaggatgaccatgagtgcatttaagtcgataaaaaaatat |
9492077 |
T |
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| Q |
326 |
nnnnnnnnctagacttaatgaagcaannnnnnncgcaaaaaactagctagacctaatgtcaaatagc |
392 |
Q |
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| T |
9492078 |
ataaaaaactagacttaatgaagcaatttttttcgcaaaaaactagctagacctaatgtcaaatagc |
9492144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 390 - 456
Target Start/End: Original strand, 9492174 - 9492240
Alignment:
| Q |
390 |
agccagcacacgtctgctgaaataaaaatttgttttgattaacataaaaaataatgaagatggctac |
456 |
Q |
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| T |
9492174 |
agccagcacacgtctgctgaaataaaaatttgttttgattaacataaaaaataatgaagatggctac |
9492240 |
T |
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