View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4753-Insertion-18 (Length: 347)
Name: NF4753-Insertion-18
Description: NF4753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4753-Insertion-18 |
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| [»] chr7 (5 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 8 - 347
Target Start/End: Complemental strand, 38286490 - 38286151
Alignment:
| Q |
8 |
ccggtcaatccgactagtgtttccattaggtactaaacacactggtgtcattgaaaggatgatttccaaaggaattgctaagggagtcaaacgtcttgaa |
107 |
Q |
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| T |
38286490 |
ccggtcaatccgactagtgtttccattaggtactaaacacactggtgtcatcgaaaggatgatttccaaagtaattgctaagggagtcaaacgtcttgaa |
38286391 |
T |
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| Q |
108 |
ttgatcttatcatatcaagatgatgatgatgctgattttgattacatacgtccatacacattacccttcatattacccttcgatctcttatctgacgctg |
207 |
Q |
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| T |
38286390 |
ttgatcttatcatatcaagatgatgatgatgctgattttgattacatacgtccatacacattacccttcatattacccttcgatctcttatctgacgctg |
38286291 |
T |
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| Q |
208 |
attctctaacgtatctgcacttaaagaggtgcatcctaataactatggacaacttctgtggtttgaagaatttgaaaactcttgtgttgtctctagtttc |
307 |
Q |
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| T |
38286290 |
attctctaacgtatctgcacttaaagaggtgcatcctaataactatggacaacttctgtggtttgaagaatttgaaaactcttgtgttgtctctagtttc |
38286191 |
T |
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| Q |
308 |
tgtgaaacaggatttgattcaatgtctactttccaactgc |
347 |
Q |
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| T |
38286190 |
tgtgaaacaggatttgattcaatgtctactttccaactgc |
38286151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 120
Target Start/End: Complemental strand, 38157959 - 38157851
Alignment:
| Q |
12 |
tcaatccgactagtgtttccattaggtactaaacacactggtgtcattgaaaggatgatttccaaaggaattgctaagggagtcaaacgtcttgaattga |
111 |
Q |
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| T |
38157959 |
tcaatccgactaagttttccattaggtcctaaatacaatgattccattgacagaatgattaccaaaggaattgctaagggtgccaaacgtattgaattgc |
38157860 |
T |
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| Q |
112 |
tcttatcat |
120 |
Q |
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|||| |||| |
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| T |
38157859 |
tcttctcat |
38157851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 38188077 - 38188013
Alignment:
| Q |
27 |
tttccattaggtactaaacacactggtgtcattgaaaggatgatttccaaaggaattgctaaggg |
91 |
Q |
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| T |
38188077 |
tttccattagatactaaacacagtgttgtcattgacagagtgatttccaaaggaattgctaaggg |
38188013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 125
Target Start/End: Complemental strand, 38173408 - 38173310
Alignment:
| Q |
27 |
tttccattaggtactaaacacactggtgtcattgaaaggatgatttccaaaggaattgctaagggagtcaaacgtcttgaattgatcttatcatatcaa |
125 |
Q |
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| T |
38173408 |
tttccattaggtaatcaacatagtgatgtcattgacaaaatgattttcaaaggaattgctaagggtgtggaacgtattgaactgctcttctcatatcaa |
38173310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 38150205 - 38150113
Alignment:
| Q |
27 |
tttccattaggtactaaacacactggtgtcattgaaaggatgatttccaaaggaattgctaagggagtcaaacgtcttgaattgatcttatcat |
120 |
Q |
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| T |
38150205 |
tttccattaggttctaaacacaa-gatgcaattgacagaatgatttccaaaggaattactaagggtgccaaacgtattgaattgctcttctcat |
38150113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 12 - 347
Target Start/End: Complemental strand, 2223886 - 2223557
Alignment:
| Q |
12 |
tcaatccgactagtgtttccattaggtactaaacacactggtgtcattgaaaggatgatttccaaaggaattgctaagggagtcaaacgtcttgaattga |
111 |
Q |
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| T |
2223886 |
tcaatccgactcgtgtttccattaggtaccaaacacacaggtgtcattgaaaggatgatttccaaaggaattgctaagggtgtcaaacgtcttgaattga |
2223787 |
T |
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| Q |
112 |
tcttatcatatcaagatgatgatgatgctgattttgattacatacgtccatacacattacccttcatattacccttcgatctcttatctgacgctgattc |
211 |
Q |
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| T |
2223786 |
tcttatcatatcaagatgatgatgatgctgattctgattatatgcgcccatacatatta---------ttacccttcgatctcttatctgaggctgattc |
2223696 |
T |
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| Q |
212 |
tctaacgtatctgcacttaaagaggtgcatcctaataa---ctatggacaacttctgtggtttgaagaatttgaaaactcttgtgttgtctctagtttct |
308 |
Q |
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|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2223695 |
tctaacgtatctgcacttaaagaggtgcatcctattaatatctatggacaacttctgtggtttgaagaatttgaaaactcttgtgttgtctctagtttct |
2223596 |
T |
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| Q |
309 |
gtgaaacaggatttgattcaatgtctactttccaactgc |
347 |
Q |
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| T |
2223595 |
gtgaaacaggatatgattcaatgtctactttccaactgc |
2223557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 259 - 347
Target Start/End: Complemental strand, 12409708 - 12409620
Alignment:
| Q |
259 |
acttctgtggtttgaagaatttgaaaactcttgtgttgtctctagtttctgtgaaacaggatttgattcaatgtctactttccaactgc |
347 |
Q |
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| T |
12409708 |
acttctctggtttgaagaatttgagaactcttgtgttgcgtctagtcgatgtgaagcaggatatgattcaatgactactttccaactgc |
12409620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 259 - 347
Target Start/End: Complemental strand, 12421768 - 12421680
Alignment:
| Q |
259 |
acttctgtggtttgaagaatttgaaaactcttgtgttgtctctagtttctgtgaaacaggatttgattcaatgtctactttccaactgc |
347 |
Q |
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| T |
12421768 |
acttctctggtttgaagaatttgagaactcttgtgttgcgtctagtcgatgtgaagcaggatatgattcaatgactactttccaactgc |
12421680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 125
Target Start/End: Complemental strand, 12409916 - 12409845
Alignment:
| Q |
54 |
gtcattgaaaggatgatttccaaaggaattgctaagggagtcaaacgtcttgaattgatcttatcatatcaa |
125 |
Q |
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| T |
12409916 |
gtcattgacagaatgatttccaaaggaattgccaagggtgtcaaacgtattgaactgctcttctcatatcaa |
12409845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 125
Target Start/End: Complemental strand, 12421976 - 12421905
Alignment:
| Q |
54 |
gtcattgaaaggatgatttccaaaggaattgctaagggagtcaaacgtcttgaattgatcttatcatatcaa |
125 |
Q |
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| T |
12421976 |
gtcattgacagaatgatttccaaaggaattgccaagggtgtcaaacgtattgaactgctcttctcatatcaa |
12421905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 4164397 - 4164357
Alignment:
| Q |
67 |
tgatttccaaaggaattgctaagggagtcaaacgtcttgaa |
107 |
Q |
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| T |
4164397 |
tgatttccaaaggaattgctaagggtgccaaacgtattgaa |
4164357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 4226018 - 4225978
Alignment:
| Q |
67 |
tgatttccaaaggaattgctaagggagtcaaacgtcttgaa |
107 |
Q |
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| T |
4226018 |
tgatttccaaaggaattgctaagggtgccaaacgtattgaa |
4225978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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