View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4753-Insertion-3 (Length: 923)
Name: NF4753-Insertion-3
Description: NF4753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4753-Insertion-3 |
 | |
|
| [»] scaffold0016 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 320 - 684
Target Start/End: Complemental strand, 27511502 - 27511138
Alignment:
| Q |
320 |
gctgtgtttgatctgttcatgaaacaagttgtcttcaacaaaaaggtgattcgaatcattcaaagccgctaccattggagagagacagaggattatatgc |
419 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27511502 |
gctgtgtttgatctgttcatgaatcaagtcgtcttcaacaaaaaggtgattcgaatcattcaaagccgctaccattggagagagacagaggattatatgc |
27511403 |
T |
|
| Q |
420 |
ttatccgtatgtatatgcctggacgctttaaggaagatgtgaatatcaacgtgtatcagaatactcttagcattaaaggcaagagagatggtcgtgaatc |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
27511402 |
ttatccgtatgtatatgcctggacgctttaaggaagatgtgaatatcaacgtgtatcagaatactcttagcattaaaggcgagagaggtggtcgtgaatc |
27511303 |
T |
|
| Q |
520 |
ctcttgcacgcatgatttaactgggagacattacaagatcgatcagattagagctaggatgaaatgtagtgtgctcaaggttgttttgcctaaaataaag |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27511302 |
ctcttgcacgcatgatttaactgggagacattacaagatcgatcagattagagctaggatgaaatgtagtgtgctcaaggttgttttgcctaaaataaag |
27511203 |
T |
|
| Q |
620 |
gatggggaaactacggaggaaaggaacgacaataatgtgattattgtcaaggttgaatagaagaa |
684 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27511202 |
gatggggaaactacggaggaaaggaacgacaataatgtgattattgtcaaggttgaatagaagaa |
27511138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 27511808 - 27511586
Alignment:
| Q |
8 |
caaagtctttccttcgccccatcgccccctcttctctcacagtctcctcccccggtctcatctcaaagtcttacctttaccccatcgtcttgtctgtcct |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27511808 |
caaagtctttccttcgccccatcgccccctcttctctcacagtctcctcccccggtctcatctcaaagtcttacctttaccccatcgtcttgtctgtcct |
27511709 |
T |
|
| Q |
108 |
tcgcccctcttaccgctattttaaagccaatccccatctcattagccccttcgccccttttaatactagtggcatgcctcagaacgctgacactaaccgc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27511708 |
tcgcccctcttaccgctattttaaagccaatccccatctcattagccccttcgccccttttaatactagtggcatgcctcagaacgctgacactaaccgc |
27511609 |
T |
|
| Q |
208 |
aatggtcttgtctcaggtagatg |
230 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
27511608 |
aatggtcttgtctcaggtagatg |
27511586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 798 - 922
Target Start/End: Complemental strand, 27510148 - 27510024
Alignment:
| Q |
798 |
gatggtgatagactagtgttgctgtgttaaacattaatgactgcttgaaaattaatgaatttagcttttttataattctgatgttaaaatctcgaattaa |
897 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27510148 |
gatggtgatagactagtgttgctgtgttaaacattaatgactgcttgaaaattaatgaatttagcttttttataattctgatgttaaaatatcgaattaa |
27510049 |
T |
|
| Q |
898 |
attctaaaataaaggattttgcgat |
922 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
27510048 |
attctaaaataaaggattttgcgat |
27510024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 170; Significance: 9e-91; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 170; E-Value: 9e-91
Query Start/End: Original strand, 370 - 699
Target Start/End: Original strand, 77779 - 78094
Alignment:
| Q |
370 |
tcgaatcattcaaagccgctaccattggagagagacagaggattatatgcttatccgtatgtatatgcctggacgctttaaggaagatgtgaatatcaac |
469 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
77779 |
tcgaatcattcaaagccgctaacgttggagagagacag--gattatatgcttatacgtatgtatatgcctggacgcattaaggaagatgtg--------- |
77867 |
T |
|
| Q |
470 |
gtgtatcagaatactcttagcattaaaggcaagagagatggtcgtgaatcctcttgcacgcatgatttaactgggagacattacaagatcgatcagatta |
569 |
Q |
| |
|
|||||||| ||||||||||||||||| || ||| ||||||| |||||||| ||| | ||||||||| |||| |||||||||||| || |||||| |
|
|
| T |
77868 |
---tatcagaacactcttagcattaaaggtgagcgaggtggtcgtaaatcctctagcagacttgatttaaccgggaaacattacaagatttattagatta |
77964 |
T |
|
| Q |
570 |
gagctaggatgaaatgtagtgtgctcaaggttgttttgcctaaaataaaggatggggaaactacggaggaaaggaacgacaataatgtgattattgtcaa |
669 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||| ||||| |||||||||||||||| |
|
|
| T |
77965 |
cagctaagatgaaatgtagtgtgctcaaggttgttttgcctaaaatgaaggatggggaaactacagagggaaggaacaacaatgatgtgattattgtcaa |
78064 |
T |
|
| Q |
670 |
ggttgaatagaagaatatggtattttcatt |
699 |
Q |
| |
|
||||||||||||||||||||| |||||||| |
|
|
| T |
78065 |
ggttgaatagaagaatatggtcttttcatt |
78094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 8 - 229
Target Start/End: Original strand, 77350 - 77584
Alignment:
| Q |
8 |
caaagtctttccttcgccccatcgccccctcttctctcacagtctcctcccccggtctcatctcaaagtcttacctttaccccatcg-tcttgtctgtcc |
106 |
Q |
| |
|
|||||| |||||||| |||||| ||| ||||||| | ||||||||||||||||||||||||||||||||||| ||| | ||||| | |||| |||||| |
|
|
| T |
77350 |
caaagtatttccttcaccccattgccatctcttctataacagtctcctcccccggtctcatctcaaagtcttatcttcatcccatgggtcttttctgtca |
77449 |
T |
|
| Q |
107 |
ttcgcccc------------tcttaccgctattttaaagccaatccccatctcattagccccttcgccccttttaatactagtggcatgcctcagaacgc |
194 |
Q |
| |
|
|||| ||| || ||||||||||| |||||||||||||||||| | ||||| ||||| ||||| ||| | ||||||||| || ||||| |
|
|
| T |
77450 |
ttcgtcccgtcgctagttcctcctaccgctatttcaaagccaatccccatctcctaagccctgtcgcctcttttgatatcaatggcatgccccaaaacgc |
77549 |
T |
|
| Q |
195 |
tgacactaaccgcaatggtcttgtctcaggtagat |
229 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||| |
|
|
| T |
77550 |
ggacactcaccgcaatggtcttgtatcaggtagat |
77584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 105; Significance: 6e-52; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 432 - 620
Target Start/End: Complemental strand, 33702465 - 33702282
Alignment:
| Q |
432 |
atatgcctggacgctttaaggaagatgtgaatatcaacgtgtatcagaatactcttagcattaaaggcaagagagatggtcgtgaatcctcttgcacgca |
531 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||| ||||| || ||||||||||||||||| |||||| ||||||| ||||||||||||| | |
|
|
| T |
33702465 |
atatgcctgaacgcttgaaggaagatgtgaatatcaatgtgtaaca-----ctcttagcattaaaggcgagagaggtggtcgtaaatcctcttgcacact |
33702371 |
T |
|
| Q |
532 |
tgatttaactgggagacattacaagatcgatcagattagagctaggatgaaatgtagtgtgctcaaggttgttttgcctaaaataaagg |
620 |
Q |
| |
|
||||||||| |||| | ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
33702370 |
tgatttaacagggaaatcttacaagattgatcagattagagctaagatgaaatgtagtgtgctcaaggttgttttgcctaaaatgaagg |
33702282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 800 - 868
Target Start/End: Complemental strand, 33702275 - 33702207
Alignment:
| Q |
800 |
tggtgatagactagtgttgctgtgttaaacattaatgactgcttgaaaattaatgaatttagctttttt |
868 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| || |||||| |
|
|
| T |
33702275 |
tggtgatagactagtgttgctgtgttaaacattaatgactaactgaaaactaatgaattaagttttttt |
33702207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University