View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4753-Insertion-4 (Length: 883)
Name: NF4753-Insertion-4
Description: NF4753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4753-Insertion-4 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 510; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 313 - 883
Target Start/End: Complemental strand, 17746857 - 17746287
Alignment:
| Q |
313 |
caactgcattaaatgcaatgaccatttagttcctacatgtctcttcatgtctgtcacaataaaatctcactagcacgtttgtgttctattccatttgaat |
412 |
Q |
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| T |
17746857 |
caactgcattaaatgcaatgaccatttagttcctacatgtctcttcatgtctgtcacaataaaatctcactagcacgtttgtgttctattccatttgaat |
17746758 |
T |
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| Q |
413 |
tattggaagatgcattaaagtacaatggactattcactagggaaggggttagatccaactgtgaaaagggaaaaagacaatacttttnnnnnnngatgtg |
512 |
Q |
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| T |
17746757 |
tattggaagatgcattaaagtacaatggactattcactagggaaggggttagatccaattgtgaaaagggaaaaagacaatacttttaaaaaaagatgtg |
17746658 |
T |
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| Q |
513 |
actacaaattatacaatcaagtagattagaacatgttcctctctagtagttatcatccttcctcctggaaggggacaaatcataggcttttcctatataa |
612 |
Q |
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| T |
17746657 |
actacatattatacaatcaagtagattagaacatgttcctctctagtagttatcatccttcctcctggaaggggacaaatcataggcttttccaatataa |
17746558 |
T |
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| Q |
613 |
caatagaaacaaaccatgattaatataataagcagctaatctttgtctattaaatatgtaattagacaaacgtttaatattataaactgttattagtcaa |
712 |
Q |
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| T |
17746557 |
caatagaaacaaaccatgattaatataataagcacctaatctttgtctattaaatatgtgattagacaaacgtttaatattataaactgttattagacaa |
17746458 |
T |
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| Q |
713 |
aaccaaaagaagtttttacggtcaacaaaagttgattcagttggtatgatttagatttagttagaattcaactcatattttaatatgacttggatttgaa |
812 |
Q |
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| T |
17746457 |
aaccaaaagaagtttttgcggtcaacaaaagttgattcagttagtatgatttagattcggttagaattcaactcatattttaatatgacttggatttgaa |
17746358 |
T |
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| Q |
813 |
tctaatgtcaatataaatactacgttgatagataatatataagaacatctataaatattttgagtcttaga |
883 |
Q |
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| T |
17746357 |
tctaatgtcaatataaatactacgttgatagataatatataagaacatctataaatattttgagtcttaga |
17746287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 8 - 217
Target Start/End: Complemental strand, 17747139 - 17746925
Alignment:
| Q |
8 |
cattcttgatcagtgtcgactatacaat-----gaataattatatcatctacatagtgattgtaggtagtgcacatggcaaatttgtgtattaaaatagc |
102 |
Q |
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| T |
17747139 |
cattcttgatcagtgtcgactatacaatacaatgaataattatatcatctacacagtgattgtaggtagtgcacatggcaaatttgtgtattaaaatagc |
17747040 |
T |
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| Q |
103 |
acaactataaatttgttggatcatctgctatctgtccaccaaagtcatactcttcatgtcgagtcttggatgcgagagtgcgtattaaaagtcttgcatt |
202 |
Q |
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| T |
17747039 |
ataactatagatttgttggatcatctgctatcttcccacaaaagtcatattctccatgtcgagtcttgaatgcgagagtgcgtattaaaagtcttgcatt |
17746940 |
T |
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| Q |
203 |
taacgattataatag |
217 |
Q |
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| T |
17746939 |
taacgattataatag |
17746925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 232 - 276
Target Start/End: Complemental strand, 17746938 - 17746894
Alignment:
| Q |
232 |
aacgattataatagttagttttgcaggattgagttagatttgacg |
276 |
Q |
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| T |
17746938 |
aacgattataatagttagttttgcaggatggagttagatttgacg |
17746894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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