View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4753-Insertion-6 (Length: 801)
Name: NF4753-Insertion-6
Description: NF4753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4753-Insertion-6 |
 | |
|
| [»] chr7 (5 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 403; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 348 - 801
Target Start/End: Complemental strand, 37429770 - 37429316
Alignment:
| Q |
348 |
tcttatttctacaaatgcagcctttaacttgactttgtcagtcatctggactgcttctttaggtgagtgaccaactgggccttccttaatcttgagattt |
447 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37429770 |
tcttctttctacaaacgcagcctttaacttgactttatcagtcatctggactgcttctttaggtgagtgaccaactgagccttccttaatcttgagattt |
37429671 |
T |
|
| Q |
448 |
cgaccatccattctatcctggtctccgacaactatacgatcagtcccagatttagatctatcttccacttctctcttttcatcacaagtaatgtcactgc |
547 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
37429670 |
cgaccatccattctatcctggtctccgacaactatacgatcagtcccagatttagatctatcttccacttctctcttgtcatcactagtaatgtcactgc |
37429571 |
T |
|
| Q |
548 |
ccaattctgtactcccactaatatcggtcccactattatttgaagatgagcaccgaggggatggatgaaaagaaatttgttttgaggcctgttcctcatt |
647 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37429570 |
ccaattctgtactcccactaatgtcggtcccactattatttgaagatgagtaccaaggggatggatgaaaagaaatttgttttgaggcctgttcctcatt |
37429471 |
T |
|
| Q |
648 |
tgtggcaggagactttttagcagctc-atctgcttcacttgcttgtgatggtggaattcttttctgctcgtagagttccaacatttgatagctaacttct |
746 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37429470 |
tgtggcaggagactttgtagcagctctttctgcttcacttgcttgtgatggtggaattcttttctgctcgtagagttccaacatttgatagctaacttct |
37429371 |
T |
|
| Q |
747 |
gcaagagaataaccataaggactcagcagactatacaaaaatacagtcgttgttt |
801 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37429370 |
gcaagagaataaccataaggactcagcagactatacaaaaatacagtcgttgttt |
37429316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 8 - 351
Target Start/End: Complemental strand, 37430142 - 37429799
Alignment:
| Q |
8 |
cctatatccggtcgtataactgcaactgagccgtttcttcatctctggttgcctagctggagaattgtccatctttctcttgtgattgttcaacaatgat |
107 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
37430142 |
cctatatccggtcgtataactgcaaccgagccgtttcttcatctctggttgcctagctggagaattatccatctttctcttgtgattgttcaacaatgat |
37430043 |
T |
|
| Q |
108 |
gaagcatcatcatctatcacttcctcttcttctgcaatgtattcatttatgtctttctgcaattgccctttcatgctcatttgtctaccatctctagttt |
207 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37430042 |
gaagcatcatcatctatcacttccccttcttctgcaatgtattcatttatgtctttctgcaattgccctttcatgcttatttgtctaccatctctagttt |
37429943 |
T |
|
| Q |
208 |
cctcataggccttaccatgatctacgtcatcgggcatagaccaattttgtcttatctcttgcttatttttctcattctcaagacctatttcaactccatc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37429942 |
cctcataggccttaccatgatctacgtcatcgggcatagaccaattttgtcttatctcttgcttatttttctcattctcaagacctatttcaactccatc |
37429843 |
T |
|
| Q |
308 |
ttctagctccctgtcaatacaatcatcgtcatccattacatctt |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37429842 |
ttctagctccctgtcaatacaatcatcgtcatccattacatctt |
37429799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 40 - 193
Target Start/End: Original strand, 37435026 - 37435181
Alignment:
| Q |
40 |
gtttcttcatctctggttgcctagctggagaattgtccatctttctcttgtgattgttcaacaatgatgaagcatcatc--atctatcacttcctcttct |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||||||| |||||| ||||||||||||||||||||||||| ||||||||| ||| ||||| |
|
|
| T |
37435026 |
gtttcttcatctctggttgcctagctggaggattatccatctttcttttgtgactgttcaacaatgatgaagcatcatcatatctatcacctccccttct |
37435125 |
T |
|
| Q |
138 |
tctgcaatgtattcatttatgtctttctgcaattgccctttcatgctcatttgtct |
193 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
37435126 |
tctgcaatgtattcattcatgtctttctgcaattgtcctttcatgctcatctgtct |
37435181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 248 - 351
Target Start/End: Original strand, 37435206 - 37435309
Alignment:
| Q |
248 |
ccaattttgtcttatctcttgcttatttttctcattctcaagacctatttcaactccatcttctagctccctgtcaatacaatcatcgtcatccattaca |
347 |
Q |
| |
|
|||||| |||||| ||||| ||||||||||||||||||||||| ||| |||||||||||||||||||| | | ||||| |||||| |||||||||||| |
|
|
| T |
37435206 |
ccaattctgtcttctctctcgcttatttttctcattctcaagagctaattcaactccatcttctagcttcatctcaatgtgatcatcctcatccattaca |
37435305 |
T |
|
| Q |
348 |
tctt |
351 |
Q |
| |
|
|||| |
|
|
| T |
37435306 |
tctt |
37435309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 675 - 786
Target Start/End: Original strand, 37435702 - 37435813
Alignment:
| Q |
675 |
tctgcttcacttgcttgtgatggtggaattcttttctgctcgtagagttccaacatttgatagctaacttctgcaagagaataaccataaggactcagca |
774 |
Q |
| |
|
|||||||||||| |||||||| ||||||| | ||| ||| |||| ||||| || ||||| || || ||||||||||||||||| ||||| |||||| | |
|
|
| T |
37435702 |
tctgcttcacttccttgtgatagtggaatgccaatctcctcatagaattccagcagttgattgcaaatttctgcaagagaataacaataagaactcagaa |
37435801 |
T |
|
| Q |
775 |
gactatacaaaa |
786 |
Q |
| |
|
| ||||||||| |
|
|
| T |
37435802 |
gggtatacaaaa |
37435813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 4e-25; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 675 - 786
Target Start/End: Complemental strand, 32506039 - 32505928
Alignment:
| Q |
675 |
tctgcttcacttgcttgtgatggtggaattcttttctgctcgtagagttccaacatttgatagctaacttctgcaagagaataaccataaggactcagca |
774 |
Q |
| |
|
|||||||||||| |||||||| |||||||||| |||||||| || |||||||||||||||| ||||||||||||||||||| ||| |||||||||| | |
|
|
| T |
32506039 |
tctgcttcacttccttgtgattgtggaattctattctgctcataaagttccaacatttgattgctaacttctgcaagagaaaaacaccaaggactcagaa |
32505940 |
T |
|
| Q |
775 |
gactatacaaaa |
786 |
Q |
| |
|
| ||||||||| |
|
|
| T |
32505939 |
ggatatacaaaa |
32505928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 293 - 351
Target Start/End: Complemental strand, 32506577 - 32506519
Alignment:
| Q |
293 |
tatttcaactccatcttctagctccctgtcaatacaatcatcgtcatccattacatctt |
351 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||| |||||| |||||||||||||||| |
|
|
| T |
32506577 |
tatttcaactccatcttcaagctccctctcaatgagatcatcctcatccattacatctt |
32506519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 221 - 351
Target Start/End: Complemental strand, 32506790 - 32506660
Alignment:
| Q |
221 |
accatgatctacgtcatcgggcatagaccaattttgtcttatctcttgcttatttttctcattctcaagacctatttcaactccatcttctagctccctg |
320 |
Q |
| |
|
|||||||||| | ||||| ||| ||||| | | |||||| ||| ||||||||||||||||||||||| ||| || ||||||||||| |||||||| |
|
|
| T |
32506790 |
accatgatcttcatcatcaggcttagacaagctctgtcttctctgttgcttatttttctcattctcaactgctaactctactccatcttcaagctccctc |
32506691 |
T |
|
| Q |
321 |
tcaatacaatcatcgtcatccattacatctt |
351 |
Q |
| |
|
||||| |||||| || ||||||| ||||| |
|
|
| T |
32506690 |
tcaatgagatcatcctcgtccattatatctt |
32506660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University