View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4753_high_12 (Length: 327)
Name: NF4753_high_12
Description: NF4753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4753_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 11 - 311
Target Start/End: Original strand, 13308439 - 13308727
Alignment:
| Q |
11 |
caaagggtgatgaaggctaaagagcaggtgaaaaagcaacaaaaagacaacaagcagaaagagatggcccttctaatgtttcaatgtttgaatgcaggga |
110 |
Q |
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| T |
13308439 |
caaagggtgatgaaggctaaagagcaggtgaaaaagcaacaaaaagacaacaagcagaaagagatagcccttctaatgtttcaatgcctgaatgcaggga |
13308538 |
T |
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| Q |
111 |
aaattgtggacaacaatatgtcaatggttgatgtgaataatcttgcttggttgattgaccaaaatttgaaggacattggaagaaggttggaagcagtgga |
210 |
Q |
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| T |
13308539 |
aaattgtggacaacaatatgtcaatggttgatgtgaataatcttgcttggttgattgaccaaaatttgaaggacattggaagaaggttggaagcagtgga |
13308638 |
T |
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| Q |
211 |
caataatggtcaaattcaaagtcagaatcaaatcatgactactccaactcagagcgaagtccgattccaaatggcaccaccaccacctgtcaagaaggaa |
310 |
Q |
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| T |
13308639 |
caataatggtcaa------------aatcaaatcatgactactccaactcagagcgaagtccaattccaaatggcaccaccaccacttgtcaagaaggaa |
13308726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 86 - 222
Target Start/End: Original strand, 15076010 - 15076146
Alignment:
| Q |
86 |
atgtttcaatgtttgaatgcagggaaaattgtggacaacaatatgtcaatggttgatgtgaataatcttgcttggttgattgaccaaaatttgaaggaca |
185 |
Q |
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| T |
15076010 |
atgtttcaatgtattaatgctgaagaaattgtgcacaatgatatgtcaatgattgatttgaatgatcttgcttggttgattgaccaaaatttgaaggaaa |
15076109 |
T |
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| Q |
186 |
ttggaagaaggttggaagcagtggacaataatggtca |
222 |
Q |
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| T |
15076110 |
ctgatagaagattggaaaaagtggataataatggtca |
15076146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 15073261 - 15073353
Alignment:
| Q |
130 |
gtcaatggttgatgtgaataatcttgcttggttgattgaccaaaatttgaaggacattggaagaaggttggaagcagtggacaataatggtca |
222 |
Q |
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| T |
15073261 |
gtcaatgattgatttgaatgttcttgcttggttgattgatcaaaatttgaaggatattcatagaagattggaagaagtggataataatggtca |
15073353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 11096184 - 11096236
Alignment:
| Q |
150 |
atcttgcttggttgattgaccaaaatttgaaggacattggaagaaggttggaa |
202 |
Q |
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| T |
11096184 |
atctttcttggttgattgaccataatttgaaggacattggtagacgtttggaa |
11096236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 223
Target Start/End: Complemental strand, 11247995 - 11247929
Alignment:
| Q |
157 |
ttggttgattgaccaaaatttgaaggacattggaagaaggttggaagcagtggacaataatggtcaa |
223 |
Q |
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| T |
11247995 |
ttggttgattgaccagaaattgaaggaggttggtagaaggttgggagaagaggataataatggtcaa |
11247929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 183
Target Start/End: Original strand, 11106879 - 11106912
Alignment:
| Q |
150 |
atcttgcttggttgattgaccaaaatttgaagga |
183 |
Q |
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| T |
11106879 |
atcttgcttggttgattgaccacaatttgaagga |
11106912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 230
Target Start/End: Original strand, 10987169 - 10987249
Alignment:
| Q |
150 |
atcttgcttggttgattgaccaaaatttgaaggacattggaagaaggttggaagcagtggacaataatggtcaaattcaaa |
230 |
Q |
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| T |
10987169 |
atcttgcttggttgattgaccataaattgaaggacgttgctagacgtttggaagcatgggataacaatgatcaaaatcaaa |
10987249 |
T |
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