View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4753_high_14 (Length: 295)
Name: NF4753_high_14
Description: NF4753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4753_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 11 - 153
Target Start/End: Original strand, 52801649 - 52801791
Alignment:
| Q |
11 |
cacagaagatggaggaggtcaggaggatgcgtcggcgggtgatggatggagaagaaggtgacatgtgagtggtcgcggcggctggccggcggtagtgtgg |
110 |
Q |
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| T |
52801649 |
cacagaagatggaggaggtcaggaggatgcgccggcgggtgatggatggagaagaaggtgacatgtgagtggtcgcggcggctggccggcggtggtgtgg |
52801748 |
T |
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| Q |
111 |
tggttgggttgtctggactcgatttgctttgttgttgggagaa |
153 |
Q |
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| T |
52801749 |
tggttgggttgtcttgactcgatttgctttgttgttgggagaa |
52801791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 224
Target Start/End: Original strand, 52801798 - 52801831
Alignment:
| Q |
191 |
gagaaacagcaagaccaaatgagattgaatatga |
224 |
Q |
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| T |
52801798 |
gagaaacggcaagaccaaatgagattgaatatga |
52801831 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 116
Target Start/End: Original strand, 34213059 - 34213098
Alignment:
| Q |
77 |
gagtggtcgcggcggctggccggcggtagtgtggtggttg |
116 |
Q |
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| T |
34213059 |
gagtggtcgcggcggctgaccggcggtggtgtggtggttg |
34213098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 116
Target Start/End: Original strand, 12003135 - 12003174
Alignment:
| Q |
77 |
gagtggtcgcggcggctggccggcggtagtgtggtggttg |
116 |
Q |
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| T |
12003135 |
gagtggtcgcggcggctgaccggcggtggtgtggtggttg |
12003174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 116
Target Start/End: Original strand, 14654743 - 14654782
Alignment:
| Q |
77 |
gagtggtcgcggcggctggccggcggtagtgtggtggttg |
116 |
Q |
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| T |
14654743 |
gagtggtcgcggcggctgaccggcggtggtgtggtggttg |
14654782 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 166
Target Start/End: Original strand, 33754132 - 33754221
Alignment:
| Q |
75 |
gtgagtggtcgcggcggctggccggcggtagtgtggtggttgggttgtctggactcgatttgctttgtt-gttgggagaagatgagagcgcgt |
166 |
Q |
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| T |
33754132 |
gtgagtggtcgtggcagctggccagcggtggtgtggtggttgccttg--tgga-tcgattggctttgttggttgggagaagaagagaacgcgt |
33754221 |
T |
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