View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4753_high_17 (Length: 237)
Name: NF4753_high_17
Description: NF4753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4753_high_17 |
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| [»] scaffold0329 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 22376505 - 22376711
Alignment:
| Q |
15 |
cataggcgtctacctcatagcaataggttaaccattaaagtgataacacctacaagatcacttgccacagctgaaccttttccacgcaacacatcaaata |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
22376505 |
cataggcgtctacctcatagcaataggttaaccattaaagtgataacacctacaagatcactttccacagctgaaccttttccacgcaacacatcaaata |
22376604 |
T |
|
| Q |
115 |
ggttttgggctcgcaaaccatctctaccacaagatgtcccttgaaaaaacgatttaatgcatctgagaacagtgtcaacttcatccacgagggaagtttc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22376605 |
ggttttgggctcgcaaaccatctctaccacaagatgtcccttgaaaaaacgatttaatgcatctgagaacagtgtcaacttcatccacgagggaagtttc |
22376704 |
T |
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| Q |
215 |
agaaaac |
221 |
Q |
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||||||| |
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| T |
22376705 |
agaaaac |
22376711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 37 - 221
Target Start/End: Original strand, 19038675 - 19038859
Alignment:
| Q |
37 |
ataggttaaccattaaagtgataacacctacaagatcacttgccacagctgaaccttttccacgcaacacatcaaataggttttgggctcgcaaaccatc |
136 |
Q |
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|||||||||||| |||||||||| ||| || ||||| || |||||| |||||| || |||| ||| |||| ||||||| ||||||||||||| | || |
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| T |
19038675 |
ataggttaaccactaaagtgatagcacataagagatctctagccacaactgaacattctccatacaatgcatctaataggtgttgggctcgcaaatcgtc |
19038774 |
T |
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| Q |
137 |
tctaccacaagatgtcccttgaaaaaacgatttaatgcatctgagaacagtgtcaacttcatccacgagggaagtttcagaaaac |
221 |
Q |
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| T |
19038775 |
tctaccacaagatgtccctttaggaaacgatataatgcatttgagaacggtgttaacttcaaccacaaggggagcttcagaaaac |
19038859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 37 - 221
Target Start/End: Original strand, 24323559 - 24323742
Alignment:
| Q |
37 |
ataggttaaccattaaagtgataacacctacaagatcacttgccacagctgaaccttttccacgcaacacatcaaataggttttgggctcgcaaaccatc |
136 |
Q |
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|||||||||||| |||||||||||||| || |||||| ||||||||| ||||||||| ||||| || |||| || || | |||||||||||| ||||| |
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| T |
24323559 |
ataggttaaccactaaagtgataacacataaaagatctcttgccacaactgaaccttctccacataatgcatctaaaag-tgttgggctcgcaagccatc |
24323657 |
T |
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| Q |
137 |
tctaccacaagatgtcccttgaaaaaacgatttaatgcatctgagaacagtgtcaacttcatccacgagggaagtttcagaaaac |
221 |
Q |
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| T |
24323658 |
tctaccacaagatgtctctttgaggaacgatttaatgcaccggagaacagtgtcaacttcaaccacaaggggagcttcaaaaaac |
24323742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0329 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0329
Description:
Target: scaffold0329; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 39 - 221
Target Start/End: Complemental strand, 17385 - 17203
Alignment:
| Q |
39 |
aggttaaccattaaagtgataacacctacaagatcacttgccacagctgaaccttttccacgcaacacatcaaataggttttgggctcgcaaaccatctc |
138 |
Q |
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|||||||||| ||||||||||||| || ||||| || |||||||||||||||||||||| ||| |||| ||||||| ||||||| |||||| |||| |
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| T |
17385 |
aggttaaccaccaaagtgataacacataagagatctctagccacagctgaaccttttccacacaatgcatctaataggtgttgggcttgcaaactgtctc |
17286 |
T |
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| Q |
139 |
taccacaagatgtcccttgaaaaaacgatttaatgcatctgagaacagtgtcaacttcatccacgagggaagtttcagaaaac |
221 |
Q |
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|||||||||||||||||| | |||||| ||||| ||| | ||||| |||||| ||||| |||| |||| || |||||||||| |
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| T |
17285 |
taccacaagatgtccctttaggaaacgacttaatacatttcagaacggtgtcaccttcaaccacaaggggagcttcagaaaac |
17203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 27 - 221
Target Start/End: Original strand, 19280496 - 19280690
Alignment:
| Q |
27 |
cctcatagcaataggttaaccattaaagtgataacacctacaagatcacttgccacagctgaaccttttccacgcaacacatcaaataggttttgggctc |
126 |
Q |
| |
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||||||| | |||||||||||| |||| ||||| ||| || | ||| || |||||||||||| ||| ||||| ||| |||| ||||||| |||||||| |
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| T |
19280496 |
cctcataaccataggttaaccactaaattgatagcacataagaaatctctagccacagctgaaacttctccacacaatgcatctaataggtgttgggctc |
19280595 |
T |
|
| Q |
127 |
gcaaaccatctctaccacaagatgtcccttgaaaaaacgatttaatgcatctgagaacagtgtcaacttcatccacgagggaagtttcagaaaac |
221 |
Q |
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||| ||| |||||||||||||||||||||| | |||||| ||||||||| | ||||| |||||||||||| |||| ||| || |||||||||| |
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| T |
19280596 |
gcagaccgtctctaccacaagatgtccctttaggaaacgacttaatgcatttaagaacggtgtcaacttcaaccacaaggtgagcttcagaaaac |
19280690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 37 - 221
Target Start/End: Complemental strand, 6251403 - 6251220
Alignment:
| Q |
37 |
ataggttaaccattaaagtgataacacctacaagatcacttgccacagctgaaccttttccacgcaacacatcaaataggttttgggctcgcaaaccatc |
136 |
Q |
| |
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|||||||||||| |||||||||| ||| | |||||| || ||||||| |||||||| ||||| ||| |||| || |||| |||||||||||| ||||| |
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| T |
6251403 |
ataggttaaccactaaagtgatatcacacaaaagatctctagccacagttgaaccttctccacacaatgcatctaaaaggtgttgggctcgcaacccatc |
6251304 |
T |
|
| Q |
137 |
tctaccacaagatgtcccttgaaaaaacgatttaatgcatctgagaacagtgtcaacttcatccacgagggaagtttcagaaaac |
221 |
Q |
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||||| |||||||||||||| | | ||||||||||| ||||||| |||||||||||| |||| |||| || || ||||||| |
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| T |
6251303 |
tctacgacaagatgtccctt-taggattaatttaatgcatttgagaacggtgtcaacttcaaccacaaggggagctttagaaaac |
6251220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 37 - 202
Target Start/End: Complemental strand, 6172062 - 6171898
Alignment:
| Q |
37 |
ataggttaaccattaaagtgataacacctacaagatcacttgccacagctgaaccttttccacgcaacacatcaaataggttttgggctcgcaaaccatc |
136 |
Q |
| |
|
|||||||||||| |||||||||| ||| | |||||| || | |||| |||||||| ||||| ||| |||| || |||| |||||||||||| ||||| |
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| T |
6172062 |
ataggttaaccactaaagtgatatcacacaaaagatctctagtcacaattgaaccttctccacacaatgcatctaaaaggtgttgggctcgcaacccatc |
6171963 |
T |
|
| Q |
137 |
tctaccacaagatgtcccttgaaaaaacgatttaatgcatctgagaacagtgtcaacttcatccac |
202 |
Q |
| |
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||||||||||||||||| || | | |||||||||||| ||||||| |||||||||||| |||| |
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| T |
6171962 |
tctaccacaagatgtccatt-taggattgatttaatgcatttgagaacggtgtcaacttcaaccac |
6171898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 152
Target Start/End: Complemental strand, 6820331 - 6820211
Alignment:
| Q |
32 |
tagcaataggttaaccattaaagtgataacacctacaagatcacttgccacagctgaaccttttccacgcaacacatcaaataggttttgggctcgcaaa |
131 |
Q |
| |
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|||| ||| |||||||| | |||||||| ||| || |||||| |||||||| | || ||| ||||| |||| | || ||||||| ||||| |||||| |
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| T |
6820331 |
tagccataagttaaccaatgaagtgatagcacataaaagatcttttgccacaaccgactcttctccacacaacgcgtctaataggtgttgggtccgcaaa |
6820232 |
T |
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| Q |
132 |
ccatctctaccacaagatgtc |
152 |
Q |
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||||||||||||||| ||||| |
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| T |
6820231 |
ccatctctaccacaatatgtc |
6820211 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 207
Target Start/End: Original strand, 12954875 - 12954954
Alignment:
| Q |
128 |
caaaccatctctaccacaagatgtcccttgaaaaaacgatttaatgcatctgagaacagtgtcaacttcatccacgaggg |
207 |
Q |
| |
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||||||||||||||||||||| | |||| |||||| |||||| || |||| |||||||||||||||| |||| |||| |
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| T |
12954875 |
caaaccatctctaccacaagacatacctttaaaaaaaagtttaatccacctgaaaacagtgtcaacttcagccacaaggg |
12954954 |
T |
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