View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4753_high_4 (Length: 528)
Name: NF4753_high_4
Description: NF4753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4753_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 47435971 - 47435702
Alignment:
| Q |
18 |
aatagtgacatatcttcaagcatgatagaagaactgtgttatggtggtaatgaccccttagggtccctctcaattcctaatgaagttgacaaagcaacga |
117 |
Q |
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| T |
47435971 |
aatagtgacatatcttcaagcatgatagaagaactgtgttatggtggtaatgaccccttagggtccctctcaattcctaatgaagttgacaaagcaacga |
47435872 |
T |
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| Q |
118 |
ttgtagaacttgctgtggtttctatggaggaactcacaatgttaactcttgctggatcccctttatggatttccaccaatgacactgagattctaaatga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47435871 |
ttgtagaacttgctgtggtttctatggaggaactcacaatcttaactcttgctggatcccctttatggatttccaccaatgacactgagattctaaatga |
47435772 |
T |
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| Q |
218 |
agctgaatacgttagggttttccccaatggaataagtccgaaactcatggggttaaaatctgaatcttca |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47435771 |
agctgaatacgttagggttttccccaatggaataagtccgaaactcatggggttaaaatctgaatcttca |
47435702 |
T |
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