View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4753_high_5 (Length: 494)
Name: NF4753_high_5
Description: NF4753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4753_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 17 - 345
Target Start/End: Original strand, 425770 - 426098
Alignment:
| Q |
17 |
aaataatagtcttcaaaaaacgtggttttggtcatggtgagaaactttggattgaaatacgttatttttcataaaaatacaaagactaaatattaatgag |
116 |
Q |
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| T |
425770 |
aaataatagtcttcaaaaaacgtggttttggtcatgatgagaaactttggattaaaatatgttatttttcataaaaatacaaagactaaatattaatgag |
425869 |
T |
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| Q |
117 |
aaaaggacactgattttaagactatcaattttaagagtnnnnnnnttatttttaagacttgatattattttttaacgggggagaaaagtagagaaggaaa |
216 |
Q |
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| T |
425870 |
aaaaggacactgattttaagactatcaattttaagagtaaaaaatttatttttcagacttgatattattttttaacgggggagaaaagtagagaaggaaa |
425969 |
T |
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| Q |
217 |
tgtaaaacaaaaattcccttaactttgtttgattaattaatgctgggccatcccgcaaatttctaatttcacatgcatcaaacttatcttcaaataagat |
316 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
425970 |
tgtaaaacaaaaattcccttcactttgtttgattaattaatgctgggccatcaagcaaatttctaatttcacatgcatcaaacttatcttcaaataagat |
426069 |
T |
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| Q |
317 |
gactagctcattgaggtaggtggaagtag |
345 |
Q |
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| T |
426070 |
gactagctcattgaggtaggtggaagtag |
426098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 408 - 485
Target Start/End: Original strand, 426161 - 426238
Alignment:
| Q |
408 |
accatagtataactccaacaacaatgttgaagttaaaacttcaacctcccaccccctacttatctaaccaagtattat |
485 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
426161 |
accatagtataactccaacaacaatgttgaagttaaaacttcaacctcccaccccctacttatctaaccaagtattat |
426238 |
T |
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