View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4753_high_7 (Length: 435)
Name: NF4753_high_7
Description: NF4753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4753_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 421
Target Start/End: Complemental strand, 14367301 - 14366866
Alignment:
| Q |
16 |
acatgaacttgagagtcaataaccatatgctaagaatatctcagaccgtataatgatataaaaggattatccattcgacgcatataacaaccgtgctcca |
115 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
14367301 |
acatgaacttgagagtcaataaccatatgctaagaatatctcagaccttataaaaatataaa-ggattatccattcgacgcatataacaactgtgctcca |
14367203 |
T |
|
| Q |
116 |
aaatcatgtgatgggaggagggatatacaaatctttaaattagttttcatgaaagcatcaaacagtatgatcttttaccctatattttatggtagctatt |
215 |
Q |
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|||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
14367202 |
aaatcatgtgatgggagg---gatagacaaatctttaaatttgttttcatgaaagcatcaaacagtatgatcttttaccctatattttatggtagcta-t |
14367107 |
T |
|
| Q |
216 |
tgcat-aacaaaggcgactgaagcatcttaaattgccaaatattgaagtaaataaacaaatccttaaattaaccaa---------------acaaaac-a |
298 |
Q |
| |
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||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
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| T |
14367106 |
tgcataaacaaaggcaactgaagcatcttaaattgccaaatattgaagtaaataaacaaatccttaaattaaccaaatacgagtttggttcacaaaacaa |
14367007 |
T |
|
| Q |
299 |
aaatttcagtatgaggtataccacgtcataaaaaggaaataatgacaatctac------------------tactgaactgccgaaacgataaagttatg |
380 |
Q |
| |
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||||| |||||||||||||||||||||||||||||| || | ||||||||||| |||||||| |||||||||||||||||||| |
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| T |
14367006 |
aaattccagtatgaggtataccacgtcataaaaagggaaaagtgacaatctactaaatttagcaataagtatactgaaccgccgaaacgataaagttatg |
14366907 |
T |
|
| Q |
381 |
aagttataaaatcttataagtatagtcttccatggacatct |
421 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||| |
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| T |
14366906 |
aagttataaaatcttataagtatagtcttccatggaaatct |
14366866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 25556070 - 25556017
Alignment:
| Q |
16 |
acatgaacttgagagtcaataaccatatgctaagaatatctcagaccgtataat |
69 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
25556070 |
acatgaacttgagagtcaataaccatatgctaagaatatctcagaccttataat |
25556017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 421
Target Start/End: Original strand, 19576244 - 19576680
Alignment:
| Q |
16 |
acatgaacttgagagtcaataaccatatgctaagaatatctcagaccgtataatgatataaaaggattatccattcgacgcatataacaaccgtgctcca |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
19576244 |
acatgaacttgagagtcaataaccatatgctaagaatatctcagaccttataaaaatataaa-ggattatccattcgacgcatataacaactgtgctcca |
19576342 |
T |
|
| Q |
116 |
aaatcatgtgatgggaggagggatatacaaatctttaaattagttttcatgaaagcatcaaacagtatgatcttttaccctatattttatggtagctatt |
215 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
19576343 |
aaatcatgtgatgggagg---gatagacaaatctttaaattagttttcatgaaagcatcaaacagtatgatcttttaccctatattttatggtagcta-t |
19576438 |
T |
|
| Q |
216 |
tgcat-aacaaaggcgactgaagcatcttaaattgccaaatattgaagtaaataaacaaatccttaaattaaccaa----------------acaaaaca |
298 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
19576439 |
tgcataaacaaaggcaactgaagcatcttaaattgctaaatattgaagtaaataaacaaatccttaaattaacccaaatacgagtttggttcacaaaaca |
19576538 |
T |
|
| Q |
299 |
aaatttc-agtatgaggtataccacgtcataaaaaggaaataatgacaatctac------------------tactgaactgccgaaacgataaagttat |
379 |
Q |
| |
|
||| ||| |||||||||||||||||| ||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
19576539 |
aaaattcgagtatgaggtataccacgccataaaaaggaaaaaatgacaatctactaaatttagcaataagtatactgaaccgccgaaacgataaagttat |
19576638 |
T |
|
| Q |
380 |
gaagttataaaatcttataagtatagtcttccatggacatct |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
19576639 |
gaagttataaaatcttataagtatagtcttccatggaaatct |
19576680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 16 - 353
Target Start/End: Original strand, 8855857 - 8856208
Alignment:
| Q |
16 |
acatgaacttgagagtcaataaccatatgctaagaatatctcagaccgtataatgatataaaaggattatccattcgacgcatataacaaccgtgctcca |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8855857 |
acatgaacttgagagtcaataaccatatgctaagaatatctcagaccttataataatataaaaggattatccattcgacgcatataacaaccgtgctcca |
8855956 |
T |
|
| Q |
116 |
aaatcatgtgatgggaggagggatatacaaatctttaaattagttttcatgaaagcatcaaacagtatgatcttttaccctatattttatggtagctatt |
215 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
8855957 |
aaatcatgtgatgggagg---gataggtaaatctttaaattagttttcatgaaagcatcaaacagtatgatcttttaccctatattttatggtagcta-t |
8856052 |
T |
|
| Q |
216 |
tgcat-aacaaaggcgactgaagcatcttaaattgccaaatattgaagtaaataaacaaatccttaaattaaccaa-----------------acaaaac |
297 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
8856053 |
tgcataaacaaaggcgactgaagcatcttaaattgccaaatattgaagtaaataaacaaatccttaaattaatcaaaaatactagtttggttcacaaaac |
8856152 |
T |
|
| Q |
298 |
aaaatttcagtatgaggtataccacgtcataaaaaggaaataatgacaatctacta |
353 |
Q |
| |
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||| || |||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8856153 |
aaagttctagtatgaggtataccacggcataaaaaggaaataatgacaatctacta |
8856208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 352 - 421
Target Start/End: Original strand, 8856293 - 8856362
Alignment:
| Q |
352 |
tactgaactgccgaaacgataaagttatgaagttataaaatcttataagtatagtcttccatggacatct |
421 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8856293 |
tactgaaccgccgaaacgataaagttatgaagttataaaatcttataagtatagtcttccatggacatct |
8856362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 386
Target Start/End: Original strand, 8856225 - 8856259
Alignment:
| Q |
352 |
tactgaactgccgaaacgataaagttatgaagtta |
386 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |
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|
| T |
8856225 |
tactgaaccgccgaaacgataaagttatgaagtta |
8856259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 8e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 26383414 - 26383272
Alignment:
| Q |
16 |
acatgaacttgagagtcaataaccatatgctaagaatatctcagaccgtataatgatataaaaggattatccattcgacgcatataacaaccgtgctcca |
115 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26383414 |
acatgaacttgagactcaataaccatatgctaagaatatctcagaccgtataataatataaaaggattatccattcgacgcatataacaaccgtgctcca |
26383315 |
T |
|
| Q |
116 |
aaatcatgtgatgggaggagggatatacaaatctttaaattag |
158 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
26383314 |
aaatcatgtgatgggaggagggatagacaaatctttaaattag |
26383272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 363 - 421
Target Start/End: Complemental strand, 26382878 - 26382820
Alignment:
| Q |
363 |
cgaaacgataaagttatgaagttataaaatcttataagtatagtcttccatggacatct |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26382878 |
cgaaacgataaagttatgaagttataaaatcttataagtatagtcttccatggacatct |
26382820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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