View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4753_low_1 (Length: 830)
Name: NF4753_low_1
Description: NF4753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4753_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 683; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 683; E-Value: 0
Query Start/End: Original strand, 16 - 811
Target Start/End: Original strand, 38173265 - 38174059
Alignment:
| Q |
16 |
caccaagcacatgtctttaaactgaatataagtaaaatatcattagcatctaaatcaaccagttaatatttcaaactaatcagtacgaatgacctgcatt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38173265 |
caccaagcacatgtctttaaactgaatataagtaaaatatcattagcatctaaatcaaccagttaatatttcaaactaatcagtacgaatgacctgcatt |
38173364 |
T |
|
| Q |
116 |
accattcagaataaatcatatt-gtcaaatgaacaaacatttaatctgcaagacgtaaataaaatnnnnnnn-caatacctcaagctcgttcgttctact |
213 |
Q |
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|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38173365 |
accattcagaataaatcatatttgacaaatgaacaaacatttaatctgcaagacgtaaataaaataaaataaacaatacctcaagctcgttcgttctact |
38173464 |
T |
|
| Q |
214 |
ttcttgagactgagactgatcatcatcatcgccgccgccgccaacatcaaagcaccagctagtcgtttcctcggaatcaacttctttatcttcagaatta |
313 |
Q |
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||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
38173465 |
ttcttgagactgagactgatcatcatcattgtcgcc---gccaacatcaaagcaccagctagtcgtttcctcggaatcatcttctttatcttcagaatta |
38173561 |
T |
|
| Q |
314 |
gaatcaacgatctcgccttcttcatactcatactcctcactctcggttctttcaatccaactactatcactatccatttcattatcatcatcattggcaa |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
38173562 |
gaatcaacgatctcgccttcttcatactcatactcctcactctcggttctttcaatccaactactatcactatccatttcattaccatcatcattggcaa |
38173661 |
T |
|
| Q |
414 |
taatctcatctctaatatcaatcatttgagtaccatcatagttattagcaataatgtcgcctctaatttcatcatcattagcgataatctcgctcctaac |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
38173662 |
taatctcatctctaatatcaatcatttgagtaccatcatagttattagtaataatgtcgcctctaatttcatcatcattagagataatctcgcttctaac |
38173761 |
T |
|
| Q |
514 |
aacagcatcaataatctcgacattttcattaacttcattttcaacaccggaacacgcaacaggaggatccgaaagaggaggaggagaatcaggggcataa |
613 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
38173762 |
aacagcatcaataatctcgacattttcattaacttcattttcaacaccggaacacgcaacgggaggatccgaaagaggaggaggggaatcaggggcataa |
38173861 |
T |
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| Q |
614 |
tcaaaattaatgaaggaatcggcgagggcgaaatcgtggtcgttgttgtccatattttttgtggaggcgcggcggaagagggattaggtttagggttaac |
713 |
Q |
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| T |
38173862 |
tcaaaattaatgaaggaatcggcgagggcgaaaacgtcgtcgtcgttgtccatgttttttgtggaggcgcggcggaagagggattaggtttagggttaac |
38173961 |
T |
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| Q |
714 |
agaaagatttgatggaattaatagcgaaaatatgtacttggtttccatatcggcaaccaatgagggtttcggttttggtttctttttggaaatgctta |
811 |
Q |
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| T |
38173962 |
aaaaagatttgatggaattaatagcgaaaatttgtacttggtttccatatcggcaaccaatgagggtttcggttttggtttctttttggaaatgctta |
38174059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 711 - 788
Target Start/End: Complemental strand, 26415363 - 26415287
Alignment:
| Q |
711 |
aacagaaagatttgatggaattaatagcgaaaatatgtacttggtttccatatcggcaaccaatgagggtttcggttt |
788 |
Q |
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|||| |||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
26415363 |
aacacaaagatttcgtggaattaatagaaaaaat-tgtacttggtttccatatcggcaaccaatgaggatttaggttt |
26415287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 711 - 783
Target Start/End: Original strand, 26416826 - 26416898
Alignment:
| Q |
711 |
aacagaaagatttgatggaattaatagcgaaaatatgt-acttggtttccatatcggcaaccaatgagggtttc |
783 |
Q |
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|||| ||||||||| |||||||||||| ||||| |||| || || |||||||||||| |||||||||||||||| |
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| T |
26416826 |
aacataaagatttggtggaattaatag-gaaaaaatgtgacatgctttccatatcgggaaccaatgagggtttc |
26416898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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