View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4753_low_11 (Length: 362)
Name: NF4753_low_11
Description: NF4753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4753_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 19 - 344
Target Start/End: Original strand, 45346390 - 45346711
Alignment:
| Q |
19 |
ttatacgcatcaaactcaacattaattcgcaataaatttaatcaacactcacgaaatcatataaacacataccatttaaaacatagcaagtattgcagaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45346390 |
ttatacgcatcaaactcaacattaattcgcaataaatttaatcaacactcacgaaatcatataaacacataccatttaaaacatagcaagtattgcagaa |
45346489 |
T |
|
| Q |
119 |
tccatacatacatacttcaaataccaggcaatttcaacatcaaagctactggtttttaacatcaattttaatgctctttgttatggttcacatgctttta |
218 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45346490 |
tccata----catacttcaaataccaggcaatttcaacatcaaagctactggtttttaacatcaattttaatgctctttgttatggttcacatgctttta |
45346585 |
T |
|
| Q |
219 |
aggttaaatcttacatggtaagccccaaatgaatcttttgatatataataactcgtcattgcacgacgcaaacacaatgttttattccaaaagactagtt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45346586 |
aggttaaatcttacatggtaagccccaaatgaatcttttgatatataataacttgtcattgcacgacgcaaacacaatgttttattccaaaagactagtt |
45346685 |
T |
|
| Q |
319 |
tgtaactataacattattattggttt |
344 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
45346686 |
tgtaactataacattattattggttt |
45346711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University