View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4753_low_15 (Length: 318)
Name: NF4753_low_15
Description: NF4753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4753_low_15 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 318
Target Start/End: Original strand, 40845253 - 40845552
Alignment:
| Q |
18 |
attagaatgtggacgatgacattacaagttgtatttagatggtttgtggtatgtttaatttattttaggtcattttaagtgtttcctttaactgtagcta |
117 |
Q |
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| T |
40845253 |
attagaatgtggacgatgacattacaagttgtatttagatggtttgtggtatgtttaatttattttaggtcattttaagtgtttcctttaactgtagtta |
40845352 |
T |
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| Q |
118 |
tatagtctaggatgattttgtggctataaatagtcttgtattcttctaaagtttcgttgtaaatcccatccttccttccttcttctcttctatttcttac |
217 |
Q |
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| T |
40845353 |
ta--gtctaggatgattttgtggctataaatagtcttgcattcttttaaagtttcgttgtaaatcccatctttccttccttcttctcttctatttcttac |
40845450 |
T |
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| Q |
218 |
ttatccattgcgagtgagttataataccacgatcactactagccattcataccat-cccaaaactcttgtgcgatttttgtgaaggaggtacggtggtta |
316 |
Q |
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| T |
40845451 |
ttatccgttgcgagtgagttataataccatgatcactactagccattcataccatccccaaaactcttgtgcgatttttgtgaaggaggtaaggtggtta |
40845550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 118 - 298
Target Start/End: Original strand, 32980275 - 32980455
Alignment:
| Q |
118 |
tatagtctaggatgattttgtggctataaatagtcttgtattcttctaaagtttcgttgtaaatcccatccttccttccttcttctcttctatttcttac |
217 |
Q |
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| T |
32980275 |
tatagtctaggatgatgttgtggctataaataatcttgcattcttcttcattttcattgcaattcccct-tttctttccttcttctcttttctttcttac |
32980373 |
T |
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| Q |
218 |
ttatccattgcgagtgagttataataccacgatcactactagccattcataccatccc-aaaactcttgtgcgatttttgtg |
298 |
Q |
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| T |
32980374 |
ttatcttttggaagtgggttatactgtcatggtcaatactaaccattcataccatccctaaaattgttgtgcgatttttgtg |
32980455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 184
Target Start/End: Complemental strand, 12988822 - 12988772
Alignment:
| Q |
134 |
tttgtggctataaatagtcttgtattcttctaaagtttcgttgtaaatccc |
184 |
Q |
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| T |
12988822 |
tttgtggctataaatagtcttgcattcttctatattttcattgcaaatccc |
12988772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 183
Target Start/End: Complemental strand, 240629 - 240519
Alignment:
| Q |
71 |
tttaatttattttaggtcattttaagtgtttcctttaactgtagctatatagtctaggatgattttgtggctataaatagtcttgtattcttctaaagtt |
170 |
Q |
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| T |
240629 |
tttaattcatttttggtcattttaaatgttttctttgactgtag--ttttagtttatgatggttttgtggttgtaaatagttttgcattcttctgcattt |
240532 |
T |
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| Q |
171 |
tcgttgtaaatcc |
183 |
Q |
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| T |
240531 |
tcattgtaaatcc |
240519 |
T |
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