View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4753_low_19 (Length: 237)

Name: NF4753_low_19
Description: NF4753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4753_low_19
NF4753_low_19
[»] scaffold0008 (1 HSPs)
scaffold0008 (8-237)||(1880-2109)
[»] chr8 (26 HSPs)
chr8 (8-237)||(32605214-32605443)
chr8 (8-237)||(32598682-32598911)
chr8 (8-237)||(17055262-17055481)
chr8 (8-182)||(30308683-30308855)
chr8 (8-220)||(23846905-23847117)
chr8 (144-234)||(22113604-22113694)
chr8 (144-234)||(22135107-22135197)
chr8 (144-234)||(22166257-22166347)
chr8 (8-182)||(23834175-23834350)
chr8 (8-217)||(16231368-16231578)
chr8 (8-133)||(15531893-15532018)
chr8 (8-94)||(21383657-21383743)
chr8 (8-133)||(15538452-15538577)
chr8 (8-94)||(21387077-21387163)
chr8 (8-217)||(22044887-22045097)
chr8 (8-66)||(14398152-14398210)
chr8 (8-99)||(17828593-17828684)
chr8 (28-133)||(18862627-18862728)
chr8 (28-133)||(21827996-21828097)
chr8 (8-99)||(24445517-24445608)
chr8 (28-94)||(21410973-21411039)
chr8 (28-94)||(21805465-21805531)
chr8 (198-234)||(19278159-19278195)
chr8 (198-234)||(21972461-21972497)
chr8 (198-234)||(21976546-21976582)
chr8 (198-234)||(22112045-22112081)
[»] chr2 (20 HSPs)
chr2 (8-237)||(41666953-41667182)
chr2 (8-237)||(26125212-26125436)
chr2 (8-194)||(60820-61005)
chr2 (8-194)||(27263276-27263463)
chr2 (8-217)||(23187079-23187288)
chr2 (8-217)||(23598342-23598551)
chr2 (8-220)||(19928392-19928604)
chr2 (8-133)||(18855438-18855561)
chr2 (10-171)||(22461129-22461289)
chr2 (8-94)||(31344881-31344967)
chr2 (28-133)||(41530986-41531087)
chr2 (28-133)||(30344973-30345074)
chr2 (28-133)||(1283412-1283513)
chr2 (198-234)||(12901388-12901424)
chr2 (198-234)||(15477797-15477833)
chr2 (198-234)||(24628355-24628391)
chr2 (198-234)||(27379309-27379345)
chr2 (198-234)||(27383355-27383391)
chr2 (198-234)||(27601990-27602026)
chr2 (198-234)||(41530886-41530922)
[»] scaffold0043 (1 HSPs)
scaffold0043 (8-234)||(77047-77273)
[»] scaffold0111 (2 HSPs)
scaffold0111 (8-229)||(8503-8724)
scaffold0111 (8-186)||(15647-15825)
[»] chr4 (30 HSPs)
chr4 (8-237)||(14708507-14708736)
chr4 (8-237)||(42997323-42997552)
chr4 (8-234)||(28569320-28569546)
chr4 (8-217)||(3412802-3413009)
chr4 (10-179)||(15224800-15224969)
chr4 (8-182)||(18236895-18237068)
chr4 (8-220)||(16243290-16243502)
chr4 (8-220)||(19757491-19757703)
chr4 (8-220)||(19782103-19782315)
chr4 (8-133)||(26243642-26243767)
chr4 (8-219)||(2014782-2014993)
chr4 (8-194)||(1951677-1951864)
chr4 (8-223)||(23139275-23139489)
chr4 (8-217)||(18222271-18222481)
chr4 (8-194)||(18602662-18602833)
chr4 (8-171)||(17152427-17152589)
chr4 (8-217)||(9530438-9530646)
chr4 (8-94)||(43256428-43256514)
chr4 (8-217)||(18228746-18228956)
chr4 (8-99)||(45938152-45938243)
chr4 (8-133)||(22634398-22634525)
chr4 (28-133)||(10712876-10712977)
chr4 (28-133)||(10926646-10926747)
chr4 (8-94)||(18609319-18609405)
chr4 (28-77)||(14954201-14954250)
chr4 (28-77)||(25689893-25689942)
chr4 (198-234)||(4561210-4561246)
chr4 (198-234)||(5756814-5756850)
chr4 (198-234)||(9556724-9556760)
chr4 (198-234)||(33742571-33742607)
[»] chr5 (24 HSPs)
chr5 (8-234)||(21885065-21885291)
chr5 (8-234)||(26172468-26172694)
chr5 (8-217)||(4036223-4036433)
chr5 (8-182)||(25229334-25229508)
chr5 (8-182)||(25293490-25293664)
chr5 (10-179)||(10752949-10753118)
chr5 (8-220)||(33409232-33409444)
chr5 (8-133)||(16674156-16674281)
chr5 (8-194)||(18774206-18774394)
chr5 (8-182)||(18784049-18784224)
chr5 (8-94)||(18355961-18356047)
chr5 (10-133)||(17718416-17718538)
chr5 (8-166)||(24532993-24533150)
chr5 (8-223)||(26666018-26666233)
chr5 (8-223)||(26937615-26937830)
chr5 (8-217)||(26742639-26742849)
chr5 (8-94)||(20911186-20911272)
chr5 (8-217)||(42805423-42805633)
chr5 (8-133)||(21340744-21340869)
chr5 (8-171)||(20232554-20232716)
chr5 (28-133)||(10753387-10753488)
chr5 (8-65)||(23535633-23535690)
chr5 (198-234)||(19472596-19472632)
chr5 (198-234)||(20296041-20296077)
[»] scaffold0585 (1 HSPs)
scaffold0585 (8-237)||(9338-9567)
[»] scaffold0044 (3 HSPs)
scaffold0044 (8-237)||(62264-62493)
scaffold0044 (8-133)||(12907-13034)
scaffold0044 (8-44)||(19191-19227)
[»] chr6 (28 HSPs)
chr6 (8-237)||(21702291-21702520)
chr6 (8-237)||(25135545-25135774)
chr6 (8-194)||(1587647-1587833)
chr6 (8-194)||(20803469-20803656)
chr6 (10-179)||(31478162-31478331)
chr6 (10-179)||(1644293-1644462)
chr6 (8-182)||(5616744-5616917)
chr6 (8-220)||(22592694-22592905)
chr6 (8-133)||(9482270-9482395)
chr6 (8-217)||(12706692-12706902)
chr6 (8-217)||(12496312-12496521)
chr6 (10-171)||(19662775-19662935)
chr6 (8-94)||(23414649-23414735)
chr6 (8-94)||(27556407-27556493)
chr6 (8-223)||(2685206-2685421)
chr6 (8-223)||(16741209-16741425)
chr6 (10-76)||(16624137-16624203)
chr6 (8-67)||(27416230-27416289)
chr6 (28-133)||(31477792-31477893)
chr6 (28-77)||(22949131-22949180)
chr6 (28-77)||(22953087-22953136)
chr6 (28-77)||(23871575-23871624)
chr6 (28-77)||(23875531-23875580)
chr6 (31-133)||(16760321-16760419)
chr6 (198-234)||(11567056-11567092)
chr6 (198-234)||(12618721-12618757)
chr6 (198-234)||(23395262-23395298)
chr6 (198-234)||(23990114-23990150)
[»] scaffold0034 (1 HSPs)
scaffold0034 (11-237)||(16536-16762)
[»] chr7 (36 HSPs)
chr7 (8-237)||(35151609-35151838)
chr7 (8-237)||(16275495-16275724)
chr7 (8-194)||(14216918-14217104)
chr7 (8-194)||(15728328-15728514)
chr7 (8-217)||(16724524-16724732)
chr7 (8-217)||(17701538-17701746)
chr7 (8-217)||(8917430-8917639)
chr7 (8-194)||(18556976-18557162)
chr7 (8-182)||(13461764-13461938)
chr7 (8-220)||(13149158-13149370)
chr7 (8-194)||(9593348-9593535)
chr7 (18-133)||(11987225-11987340)
chr7 (8-217)||(18951-19161)
chr7 (28-159)||(16457309-16457439)
chr7 (8-94)||(13918795-13918881)
chr7 (8-94)||(25927518-25927604)
chr7 (8-77)||(1859118-1859187)
chr7 (10-133)||(18425443-18425562)
chr7 (10-116)||(2530384-2530491)
chr7 (8-133)||(13635445-13635572)
chr7 (8-133)||(16583259-16583386)
chr7 (28-133)||(45169988-45170089)
chr7 (8-133)||(7519335-7519460)
chr7 (29-134)||(6801237-6801341)
chr7 (8-76)||(12318130-12318198)
chr7 (198-234)||(12704535-12704571)
chr7 (198-234)||(12715058-12715094)
chr7 (198-234)||(12718862-12718898)
chr7 (198-234)||(12723773-12723809)
chr7 (8-76)||(15580694-15580762)
chr7 (198-234)||(16114435-16114471)
chr7 (198-234)||(16117588-16117624)
chr7 (198-234)||(16907077-16907113)
chr7 (198-234)||(18279597-18279633)
chr7 (198-234)||(18283560-18283596)
chr7 (198-234)||(26292589-26292625)
[»] scaffold0371 (1 HSPs)
scaffold0371 (8-234)||(15341-15567)
[»] scaffold0546 (2 HSPs)
scaffold0546 (8-237)||(1903-2132)
scaffold0546 (8-220)||(6147-6359)
[»] scaffold0109 (4 HSPs)
scaffold0109 (8-237)||(11175-11404)
scaffold0109 (8-237)||(38692-38921)
scaffold0109 (8-220)||(6948-7160)
scaffold0109 (198-234)||(35819-35855)
[»] chr3 (36 HSPs)
chr3 (8-234)||(16696789-16697022)
chr3 (10-179)||(4589125-4589294)
chr3 (10-179)||(19775353-19775522)
chr3 (8-171)||(16797994-16798156)
chr3 (8-171)||(16808821-16808983)
chr3 (8-133)||(38814388-38814513)
chr3 (8-133)||(3833678-3833803)
chr3 (8-94)||(12339470-12339556)
chr3 (10-223)||(17241978-17242191)
chr3 (8-94)||(8489487-8489573)
chr3 (8-94)||(15464869-15464955)
chr3 (10-131)||(15850063-15850183)
chr3 (8-94)||(5223068-5223154)
chr3 (10-133)||(16750570-16750689)
chr3 (10-132)||(31097532-31097656)
chr3 (9-94)||(11854422-11854507)
chr3 (8-99)||(1598490-1598581)
chr3 (8-133)||(15482666-15482793)
chr3 (28-133)||(4111231-4111332)
chr3 (8-99)||(15941915-15942006)
chr3 (28-133)||(15964995-15965096)
chr3 (28-133)||(15968919-15969020)
chr3 (28-133)||(15972843-15972944)
chr3 (28-133)||(19775791-19775892)
chr3 (28-94)||(4107414-4107480)
chr3 (144-220)||(16865023-16865100)
chr3 (8-94)||(11300781-11300868)
chr3 (28-133)||(37439618-37439719)
chr3 (198-234)||(7109895-7109931)
chr3 (198-234)||(7113830-7113866)
chr3 (28-76)||(14665427-14665475)
chr3 (198-234)||(15617571-15617607)
chr3 (198-234)||(22321861-22321897)
chr3 (198-234)||(22336916-22336952)
chr3 (198-234)||(27409520-27409556)
chr3 (198-234)||(28949921-28949957)
[»] scaffold0130 (1 HSPs)
scaffold0130 (8-186)||(5924-6102)
[»] scaffold0029 (3 HSPs)
scaffold0029 (10-179)||(80300-80469)
scaffold0029 (28-133)||(80738-80842)
scaffold0029 (198-234)||(65404-65440)
[»] chr1 (19 HSPs)
chr1 (10-179)||(20229161-20229330)
chr1 (8-194)||(19211870-19212057)
chr1 (8-130)||(20138086-20138209)
chr1 (8-133)||(18882371-18882496)
chr1 (8-133)||(46975471-46975596)
chr1 (10-171)||(12646876-12647036)
chr1 (8-94)||(33797286-33797372)
chr1 (10-133)||(41388223-41388342)
chr1 (10-76)||(39244176-39244242)
chr1 (10-76)||(39247731-39247797)
chr1 (28-133)||(23819276-23819381)
chr1 (28-133)||(1925111-1925212)
chr1 (28-133)||(20924125-20924226)
chr1 (202-237)||(21615635-21615670)
chr1 (8-75)||(36819345-36819412)
chr1 (198-234)||(16375334-16375370)
chr1 (198-234)||(20228685-20228721)
chr1 (198-234)||(21407549-21407585)
chr1 (198-234)||(52639735-52639771)
[»] scaffold0037 (1 HSPs)
scaffold0037 (10-179)||(80706-80876)
[»] scaffold1552 (1 HSPs)
scaffold1552 (8-216)||(372-565)
[»] scaffold0070 (1 HSPs)
scaffold0070 (8-220)||(9907-10119)
[»] scaffold0042 (2 HSPs)
scaffold0042 (8-220)||(63858-64069)
scaffold0042 (8-233)||(75742-75965)
[»] scaffold0284 (1 HSPs)
scaffold0284 (8-220)||(18358-18570)
[»] scaffold0120 (1 HSPs)
scaffold0120 (8-133)||(19994-20119)
[»] scaffold0001 (1 HSPs)
scaffold0001 (8-133)||(173295-173420)
[»] scaffold0010 (1 HSPs)
scaffold0010 (50-182)||(23262-23393)
[»] scaffold0168 (1 HSPs)
scaffold0168 (8-133)||(3507-3633)
[»] scaffold0334 (1 HSPs)
scaffold0334 (10-217)||(18253-18461)
[»] scaffold0009 (1 HSPs)
scaffold0009 (8-133)||(228350-228475)
[»] scaffold0193 (1 HSPs)
scaffold0193 (8-133)||(9424-9549)
[»] scaffold0293 (1 HSPs)
scaffold0293 (8-94)||(20480-20566)
[»] scaffold0013 (1 HSPs)
scaffold0013 (8-133)||(2649-2775)
[»] scaffold0228 (1 HSPs)
scaffold0228 (8-133)||(18608-18735)
[»] scaffold0132 (1 HSPs)
scaffold0132 (8-223)||(36310-36524)
[»] scaffold0012 (2 HSPs)
scaffold0012 (8-217)||(24861-25072)
scaffold0012 (28-133)||(189359-189460)
[»] scaffold0003 (2 HSPs)
scaffold0003 (8-223)||(139715-139929)
scaffold0003 (8-67)||(71072-71131)
[»] scaffold0299 (1 HSPs)
scaffold0299 (8-94)||(6684-6770)
[»] scaffold0016 (1 HSPs)
scaffold0016 (8-65)||(207894-207951)
[»] scaffold0051 (1 HSPs)
scaffold0051 (10-94)||(30890-30974)
[»] scaffold0229 (1 HSPs)
scaffold0229 (28-133)||(11483-11584)
[»] scaffold0141 (1 HSPs)
scaffold0141 (28-133)||(14069-14170)
[»] scaffold0031 (1 HSPs)
scaffold0031 (28-133)||(36068-36169)
[»] scaffold1461 (1 HSPs)
scaffold1461 (81-194)||(6-119)
[»] scaffold0028 (1 HSPs)
scaffold0028 (198-234)||(58595-58631)


Alignment Details
Target: scaffold0008 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 237
Target Start/End: Original strand, 1880 - 2109
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  1880 catcatcaacttattcataatcatgcaacttagttaaatcacaattgcagcataatcaaatcacatcaagttaaataacaaatcattctcaatagtttct 1979  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaagcttaacagttcatgatcattatct 207  Q
    ||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  1980 tgatcattcaacaacaattcaagtaagtataattcaatccagaattcacttcataatcatttaacaattcataaagcttcacagttcatgatcattatct 2079  T
Q  208 ttaataggtcacactaagtaccgaaagctc 237  Q
    |||||||||||||||||||||| |||||||    
T  2080 ttaataggtcacactaagtacctaaagctc 2109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 8 - 237
Target Start/End: Original strand, 32605214 - 32605443
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||| || |||||| |||||||||||||||||| |||||||||||||||||||||    
T  32605214 catcatcaacttattcataatcatgcaacttagttaaataacaattgcagcacaatcaaatcacatcaagttaaataacaaatcattctcaatagtttct 32605313  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaagcttaacagttcatgatcattatct 207  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  32605314 tgatcattcaacaacaattcaagtaagtataattcaatccataattcacttcataatcatttaacaattcataaagcttcacagttcatgatcattatct 32605413  T
Q  208 ttaataggtcacactaagtaccgaaagctc 237  Q
    |||||||||||||||||||||| |||||||    
T  32605414 ttaataggtcacactaagtacctaaagctc 32605443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 8 - 237
Target Start/End: Original strand, 32598682 - 32598911
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||| || |||||| ||||||||||| |||||| |||||||||||||||||||||    
T  32598682 catcatcaacttattcataatcatgcaacttagttaaataacaattgcagcacaatcaaatcacatcaagtcaaataacaaatcattctcaatagtttct 32598781  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaagcttaacagttcatgatcattatct 207  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||    
T  32598782 tgatcattcaacaacaattcaagtaagtataattcaatccataattcacttcataatcatttaacaattcataaagcttcacagttcatgatcataatct 32598881  T
Q  208 ttaataggtcacactaagtaccgaaagctc 237  Q
     ||||||||||||||||||||| |||||||    
T  32598882 gtaataggtcacactaagtacctaaagctc 32598911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 17055481 - 17055262
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||| | ||||||| |||||||| ||||||||||||||||||||     
T  17055481 catcatcaacttattcataatcatgcaacttagttaaataacaattgcagcataatcaaataacatcaacttaaataacaaatcattctcaatagtttc- 17055383  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaagcttaacagttcatgatcattatct 207  Q
             |||||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  17055382 ---------aacaacaattcaagtaagtataattcaatccataattcacttcataatcatttaacaattcataaagcttcacagttcatgatcattatct 17055292  T
Q  208 ttaataggtcacactaagtaccgaaagctc 237  Q
    |||||||||||||||||||||| |||||||    
T  17055291 ttaataggtcacactaagtacctaaagctc 17055262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 182
Target Start/End: Complemental strand, 30308855 - 30308683
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||||||||||||| |||||||| |||||| ||  ||||||||||||||||||| || |||||  || ||||| ||||||||| ||| | |||||    
T  30308855 catcatcaacttattcatactcatgcaaattagtttaataacaattgcaacataatcaaatcccatcagatttaataacaaatcattcacaacaatttct 30308756  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaa 182  Q
    |||||||||||||| ||||||||||| || || |  ||||||||||||||||||||||| |||| ||||| ||||    
T  30308755 tgatcattcaacaataattcaagtaa-tacaa-tcaatccataattcacttcataatcacttaacaattcttaaa 30308683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 220
Target Start/End: Complemental strand, 23847117 - 23846905
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    |||||||| ||||||||||| |||||||||||||||||  ||| ||||| ||||||||| ||||| ||  || ||||| ||||||||||||| | |||||    
T  23847117 catcatcagcttattcataaacatgcaacttagttaaataacatttgcagcataatcaaatcacaacagatttaataacaaatcattctcaacaatttct 23847018  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcat-aaagcttaacagttcatgatcattatc 206  Q
    |||||||||||||| |||||||||||    || |  ||||||| |||| |||||||||  |||| | ||||| ||| ||| ||||||||   ||||||||    
T  23847017 tgatcattcaacaataattcaagtaaaggcaa-tcaatccatatttcatttcataatctcttaacagttcataaaaacttcacagttcacagtcattatc 23846919  T
Q  207 tttaataggtcaca 220  Q
    ||||||||||||||    
T  23846918 tttaataggtcaca 23846905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 144 - 234
Target Start/End: Complemental strand, 22113694 - 22113604
Alignment:
Q  144 atccataattcacttcataatcatttaaaaattcataaagcttaacagttcatgatcattatctttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||||||| | |||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||| ||||    
T  22113694 atccataattcacttcataatcatttgacaattcataaagcttcacagttcataatcattatctttaataggtcacactatgtacctaaag 22113604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 144 - 234
Target Start/End: Complemental strand, 22135197 - 22135107
Alignment:
Q  144 atccataattcacttcataatcatttaaaaattcataaagcttaacagttcatgatcattatctttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||||||| | |||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||| ||||    
T  22135197 atccataattcacttcataatcatttgacaattcataaagcttcacagttcataatcattatctttaataggtcacactatgtacctaaag 22135107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 144 - 234
Target Start/End: Complemental strand, 22166347 - 22166257
Alignment:
Q  144 atccataattcacttcataatcatttaaaaattcataaagcttaacagttcatgatcattatctttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||||||| | |||||||||||||| ||| ||||| |||||||||||||||||||||||||| ||||| ||||    
T  22166347 atccataattcacttcataatcatttgacaattcataaagcttcacacttcataatcattatctttaataggtcacactatgtacctaaag 22166257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 182
Target Start/End: Original strand, 23834175 - 23834350
Alignment:
Q  8 catcatcaactta-ttcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttc 106  Q
    ||||||||||||| |||| | ||||||||| ||||| ||  ||||||||| |||| |||| |||||||||| | ||||| ||||||||||||| | ||||    
T  23834175 catcatcaacttaattcagactcatgcaacatagtttaataacaattgcatcatagtcaaatcacatcaagcttaataacaaatcattctcaacaatttc 23834274  T
Q  107 ttgatcattcaacaacaattcaagtaagtataatttca-tccat-aattcacttcataatcatttaaaaattcataaa 182  Q
    ||| ||||||||||| ||||||||||| || ||  ||| ||||| ||||||||||||||||| |||| ||||||||||    
T  23834275 ttggtcattcaacaataattcaagtaaatacaa--tcagtccataaattcacttcataatcacttaacaattcataaa 23834350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 217
Target Start/End: Complemental strand, 16231578 - 16231368
Alignment:
Q  8 catcatcaactta-ttcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttc 106  Q
    ||||||||||||| |||| | ||||||||||||||||||  ||||||||| ||||||||| |||||||||| | ||||| || ||||| |||| |  |||    
T  16231578 catcatcaacttaattcagactcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagcttaataacaattcattttcaacaaattc 16231479  T
Q  107 ttgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcat-aaagcttaacagttcatgatcattat 205  Q
    |||||||||||| || ||||||||||| |  || |  ||||||||||||||| ||| ||| |||| | ||||| ||||||| |||||||    ||| |||    
T  16231478 ttgatcattcaataataattcaagtaaatgcaa-tcaatccataattcactttatattcacttaacatttcataaaagcttcacagttctcagtcaatat 16231380  T
Q  206 ctttaataggtc 217  Q
    ||||||||||||    
T  16231379 ctttaataggtc 16231368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 15531893 - 15532018
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    |||||||| ||||| ||||  |||||||||||||||||  ||| ||||| ||||||||| ||||| || ||| ||||| || |||||||||| | |||||    
T  15531893 catcatcagcttatacatagacatgcaacttagttaaataacatttgcagcataatcaaatcacaacaggtttaataacaattcattctcaacaatttct 15531992  T
Q  108 tgatcattcaacaacaattcaagtaa 133  Q
    |||||||||||||| |||||||||||    
T  15531993 tgatcattcaacaataattcaagtaa 15532018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 21383657 - 21383743
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcatt 94  Q
    ||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||| |||||||||| | ||||| || |||||    
T  21383657 catcatcaacttattcatactcatgcaacttagttaaataacaattgcaacataatcaaatcacatcaagcttaataacaattcatt 21383743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 15538452 - 15538577
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    |||||||| ||||| ||||  |||||||||||||||||  ||| ||||| ||||||||| ||||| || ||| ||||| || |||||||||| | |||||    
T  15538452 catcatcagcttatacatagacatgcaacttagttaaataacatttgcagcataatcaaatcacaacaggtttaataacaattcattctcaacaatttct 15538551  T
Q  108 tgatcattcaacaacaattcaagtaa 133  Q
    |||||||||||||| || ||||||||    
T  15538552 tgatcattcaacaataactcaagtaa 15538577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 21387077 - 21387163
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcatt 94  Q
    ||||||||||||||||||| ||||||||||||||||||  ||||||||| ||||||||| |||||||||| | ||||| || |||||    
T  21387077 catcatcaacttattcatactcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagcttaataacaattcatt 21387163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 217
Target Start/End: Original strand, 22044887 - 22045097
Alignment:
Q  8 catcatcaactta-ttcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttc 106  Q
    |||| |||||||| |||| | |||||||||||||||  |  ||||||||| || |||||| |||||||||| | ||||| || ||||| |||| | ||||    
T  22044887 catcgtcaacttaattcagactcatgcaacttagtttgataacaattgcagcacaatcaaatcacatcaagcttaataacaattcattttcaacaatttc 22044986  T
Q  107 ttgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcat-aaagcttaacagttcatgatcattat 205  Q
    |||||||||| | || ||||||||||| |  || |  ||||||||||||||| ||||||| |||| |  |||| ||||||| |||||||    ||| |||    
T  22044987 ttgatcattccataataattcaagtaaatgcaa-tcaatccataattcactttataatcacttaacatctcataaaagcttcacagttctcagtcaatat 22045085  T
Q  206 ctttaataggtc 217  Q
    ||||||||||||    
T  22045086 ctttaataggtc 22045097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 14398210 - 14398152
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaa 66  Q
    ||||||||||||||||||| ||||||||||||||||||  ||||||||| |||||||||    
T  14398210 catcatcaacttattcatactcatgcaacttagttaaataacaattgcagcataatcaa 14398152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 17828684 - 17828593
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaa 99  Q
    |||||||| ||||| ||||  ||||||||||||||||   ||| ||||| ||||||||| |||||||||| | ||||| |||||||||||||    
T  17828684 catcatcagcttatacatagacatgcaacttagttaattaacatttgcagcataatcaaatcacatcaagcttaataacaaatcattctcaa 17828593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 18862728 - 18862627
Alignment:
Q  28 tcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttcttgatcattcaacaacaattc 127  Q
    ||||||||||||||| ||| ||||||||| ||||||||||||| |||||| | ||||| || ||||| |||| |   |||||||||||||| || | |||    
T  18862728 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttgatcattcaataatatttc 18862633  T
Q  128 aagtaa 133  Q
    ||||||    
T  18862632 aagtaa 18862627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 21828097 - 21827996
Alignment:
Q  28 tcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttcttgatcattcaacaacaattc 127  Q
    ||||||||||||||| ||| ||||||||| ||||||||||||| |||||| | ||||| || ||||| |||| |   |||||||||||||| || | |||    
T  21828097 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttgatcattcaataatatttc 21828002  T
Q  128 aagtaa 133  Q
    ||||||    
T  21828001 aagtaa 21827996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 24445608 - 24445517
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaa 99  Q
    |||||||| ||||| ||||  |||||||||||||||||  ||| || || ||||||||| |||||||| |||  |||| |||||||||||||    
T  24445608 catcatcagcttatacatagacatgcaacttagttaaataacatttacagcataatcaaatcacatcaggtttcataacaaatcattctcaa 24445517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 21410973 - 21411039
Alignment:
Q  28 tcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcatt 94  Q
    ||||||||||||||| ||| ||||||||| ||||||||||||| |||||| | ||||| || |||||    
T  21410973 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt 21411039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 21805465 - 21805531
Alignment:
Q  28 tcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcatt 94  Q
    ||||||||||||||| ||| ||||||||| ||||||||||||| |||||| | ||||| || |||||    
T  21805465 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt 21805531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 19278195 - 19278159
Alignment:
Q  198 atcattatctttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  19278195 atcattatctttaataggtcacactatgtacctaaag 19278159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 21972497 - 21972461
Alignment:
Q  198 atcattatctttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  21972497 atcattatctttaataggtcacactatgtacctaaag 21972461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 21976582 - 21976546
Alignment:
Q  198 atcattatctttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  21976582 atcattatctttaataggtcacactatgtacctaaag 21976546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 22112045 - 22112081
Alignment:
Q  198 atcattatctttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  22112045 atcattatctttaataggtcacactatgtacctaaag 22112081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 8 - 237
Target Start/End: Original strand, 41666953 - 41667182
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  41666953 catcatcaacttattcataatcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagttaaataacaaatcattctcaatagtttct 41667052  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaagcttaacagttcatgatcattatct 207  Q
    ||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||    
T  41667053 tgatcattcaacaacaattcaagtaagtataattcaattcataattcacttcataatcatttaacaattcataaagtttcacagttcatgatcattatct 41667152  T
Q  208 ttaataggtcacactaagtaccgaaagctc 237  Q
    |||||||||||||||||||||| |||||||    
T  41667153 ttaataggtcacactaagtacctaaagctc 41667182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 8 - 237
Target Start/End: Original strand, 26125212 - 26125436
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||||||||||||||||||||||||||||||||  ||||      ||||||||| |||||| || |||||||| |||||||||||||||||||||    
T  26125212 catcatcaacttattcataatcatgcaacttagttaaataacaag-----cataatcaaatcacataaacttaaataacaaatcattctcaatagtttct 26125306  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaagcttaacagttcatgatcattatct 207  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||| |||||||||| ||||||| ||||||||||||    
T  26125307 tgatcattcaacaacaattcaagtaagtataattaaatccataattcacttcataatcatttaacaatccataaagcttcacagttcttgatcattatct 26125406  T
Q  208 ttaataggtcacactaagtaccgaaagctc 237  Q
    |||||||||||||||||||||| |||||||    
T  26125407 ttaataggtcacactaagtacctaaagctc 26125436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 8 - 194
Target Start/End: Original strand, 60820 - 61005
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||| ||||||||||||| ||||||||||||||| ||  ||||||||| |||||||||| ||||||| ||||||||| |||||||||||||||||||||    
T  60820 catcaacaacttattcatattcatgcaacttagtttaataacaattgcagcataatcaat-cacatcaggttaaataacaaatcattctcaatagtttct 60918  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaagcttaacagttc 194  Q
    |||||||||||||| |||||||| ||||||| ||  |||||||||||||||||||||||||| | |||||||||||||| |||||||    
T  60919 tgatcattcaacaataattcaagcaagtatatttcaatccataattcacttcataatcatttgacaattcataaagcttcacagttc 61005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 8 - 194
Target Start/End: Original strand, 27263276 - 27263463
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||||||||||||| ||||||||||||||| ||  ||||||||| ||||||||| |||||||| ||||||||| |||||||||||||||||||||    
T  27263276 catcatcaacttattcatattcatgcaacttagtttaataacaattgcagcataatcaaatcacatcaggttaaataacaaatcattctcaatagtttct 27263375  T
Q  108 tgatcattcaacaa-caattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaagcttaacagttc 194  Q
    ||||||||||||||  |||||||| ||||||| ||  |||||||||||||||||||||||||||| ||| | |||||||| |||||||    
T  27263376 tgatcattcaacaataaattcaagcaagtatatttcaatccataattcacttcataatcatttaacaatccgtaaagcttcacagttc 27263463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 8 - 217
Target Start/End: Original strand, 23187079 - 23187288
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||||||||||||| ||||| ||||| ||| ||  ||||||||| ||||||||| ||| |||| |||||||||||||||||||||||||||||||    
T  23187079 catcatcaacttattcatactcatggaacttggtttaataacaattgcagcataatcaaatcatatcaggttaaataaaaaatcattctcaatagtttct 23187178  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcat-aaagcttaacagttcatgatcattatc 206  Q
    |||||||||||||| ||||||||||| || || || ||||| ||||||||||||||||| |||| || |||| ||||||| ||||||||   ||||||||    
T  23187179 tgatcattcaacaataattcaagtaaatacaa-ttaatccacaattcacttcataatcacttaacaaatcataaaagcttcacagttcacagtcattatc 23187277  T
Q  207 tttaataggtc 217  Q
    |||||||||||    
T  23187278 tttaataggtc 23187288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 8 - 217
Target Start/End: Original strand, 23598342 - 23598551
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||||||||||||| ||||| ||||| ||| ||  ||||||||| ||||||||| ||| |||| |||||||||||||||||||||||||||||||    
T  23598342 catcatcaacttattcatactcatggaacttggtttaataacaattgcagcataatcaaatcatatcaggttaaataaaaaatcattctcaatagtttct 23598441  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcat-aaagcttaacagttcatgatcattatc 206  Q
    |||||||||||||| ||||||||||| || || || ||||| ||||||||||||||||| |||| || |||| ||||||| ||||||||   ||||||||    
T  23598442 tgatcattcaacaataattcaagtaaatacaa-ttaatccacaattcacttcataatcacttaacaaatcataaaagcttcacagttcacagtcattatc 23598540  T
Q  207 tttaataggtc 217  Q
    |||||||||||    
T  23598541 tttaataggtc 23598551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 8 - 220
Target Start/End: Complemental strand, 19928604 - 19928392
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||  |||||||||| |||||||||||||||||  ||| ||||| ||||||||| |||||||| ||| ||||| ||||||||||||| | |||||    
T  19928604 catcatcagattattcataaacatgcaacttagttaaataacatttgcagcataatcaaatcacatcaggtttaataacaaatcattctcaacaatttct 19928505  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcat-aaagcttaacagttcatgatcattatc 206  Q
    |||||||||||||| ||||||| |||  | || |  ||||||| |||| |||||||||   ||| ||||||| ||| ||| ||||||||   ||||||||    
T  19928504 tgatcattcaacaataattcaaataaagacaa-tcaatccatatttcatttcataatctcctaacaattcataaaaacttcacagttcacagtcattatc 19928406  T
Q  207 tttaataggtcaca 220  Q
    ||||||||||||||    
T  19928405 tttaataggtcaca 19928392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 133
Target Start/End: Complemental strand, 18855561 - 18855438
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||  |||||||||| |||||||||||||||||| ||| ||||| ||||||||| |||||||||| | ||||| ||||||||||||| |  ||||    
T  18855561 catcatcagtttattcataa-catgcaacttagttaaacaacatttgcagcataatcaaatcacatcaagcttaataacaaatcattctcaaca-attct 18855464  T
Q  108 tgatcattcaacaacaattcaagtaa 133  Q
    |||||| | ||||| |||||||||||    
T  18855463 tgatcaattaacaataattcaagtaa 18855438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 171
Target Start/End: Complemental strand, 22461289 - 22461129
Alignment:
Q  10 tcatcaacttatt-cataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttctt 108  Q
    ||||||||||||| || | ||||||||| ||||| ||  ||||||||| ||||||||| |||| ||||| | ||||| ||||||||||||| |  |||||    
T  22461289 tcatcaacttatttcagactcatgcaacatagtttaataacaattgcagcataatcaaatcacgtcaagcttaataacaaatcattctcaaca-attctt 22461191  T
Q  109 gatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaa 171  Q
    ||||| ||||||| ||||||||||||   || |  ||||||||||||||||||||||| ||||    
T  22461190 gatcaatcaacaataattcaagtaagggcaa-tcaatccataattcacttcataatcacttaa 22461129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 31344881 - 31344967
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcatt 94  Q
    ||||||||||||||||||| ||||||||||||||||||  | ||||||| ||||||||| |||||||||| | ||||| || |||||    
T  31344881 catcatcaacttattcatactcatgcaacttagttaaataataattgcagcataatcaaatcacatcaagcttaataacaattcatt 31344967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 41531087 - 41530986
Alignment:
Q  28 tcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttcttgatcattcaacaacaattc 127  Q
    ||||||||||||||| ||| ||||||||| ||||||||||||| |||||| | ||||| || ||||| |||| |   |||||||||||||| || |||||    
T  41531087 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttgatcattcaataataattc 41530992  T
Q  128 aagtaa 133  Q
    ||||||    
T  41530991 aagtaa 41530986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 30345074 - 30344973
Alignment:
Q  28 tcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttcttgatcattcaacaacaattc 127  Q
    ||||||||||||||| ||| ||||||||| ||||||||||||| |||||| | ||||| || ||||| |||| |   |||||||||||||| || | |||    
T  30345074 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttgatcattcaataatatttc 30344979  T
Q  128 aagtaa 133  Q
    ||||||    
T  30344978 aagtaa 30344973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 1283412 - 1283513
Alignment:
Q  28 tcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttcttgatcattcaacaacaattc 127  Q
    ||||||||||||| | ||| ||||||||| ||||||||||||| |||||| | ||||| || ||||| |||| |   |||||||||||||| || | |||    
T  1283412 tcatgcaacttagattaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttgatcattcaataatatttc 1283507  T
Q  128 aagtaa 133  Q
    ||||||    
T  1283508 aagtaa 1283513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 12901424 - 12901388
Alignment:
Q  198 atcattatctttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  12901424 atcattatctttaataggtcacactatgtacctaaag 12901388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 15477797 - 15477833
Alignment:
Q  198 atcattatctttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  15477797 atcattatctttaataggtcacactatgtacctaaag 15477833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 24628391 - 24628355
Alignment:
Q  198 atcattatctttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  24628391 atcattatctttaataggtcacactatgtacctaaag 24628355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 27379345 - 27379309
Alignment:
Q  198 atcattatctttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  27379345 atcattatctttaataggtcacactatgtacctaaag 27379309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 27383391 - 27383355
Alignment:
Q  198 atcattatctttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  27383391 atcattatctttaataggtcacactatgtacctaaag 27383355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 27601990 - 27602026
Alignment:
Q  198 atcattatctttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  27601990 atcattatctttaataggtcacactatgtacctaaag 27602026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 41530922 - 41530886
Alignment:
Q  198 atcattatctttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  41530922 atcattatctttaataggtcacactatgtacctaaag 41530886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 8 - 234
Target Start/End: Complemental strand, 77273 - 77047
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  77273 catcatcaacttattcataatcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagttaaataacaaatcattctcaatagtttct 77174  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaagcttaacagttcatgatcattatct 207  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||    
T  77173 tgatcattcaacaacaattcaagtaagtataattcaatccataattcacttcataatcatttaacaattcataaagcttcacagttcataatcattatct 77074  T
Q  208 ttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||| ||||| ||||    
T  77073 ttaataggtcacactatgtacctaaag 77047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 8 - 229
Target Start/End: Original strand, 8503 - 8724
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  8503 catcatcaacttattcataatcatgcaacttagttaaataacaattgcaacataatcaaatcacatcaagttaaataacaaatcattctcaatagtttct 8602  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaagcttaacagttcatgatcattatct 207  Q
    |||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||    
T  8603 tgatcattcaacaacaattctagtaagtataattcaatccataattcacttcataatcatttaacaattcataaagctttatagttcatgatcattatct 8702  T
Q  208 ttaataggtcacactaagtacc 229  Q
    |||||||||||||||| |||||    
T  8703 ttaataggtcacactatgtacc 8724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 8 - 186
Target Start/End: Original strand, 15647 - 15825
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  15647 catcatcaacttattcataatcatgcaacttagttaaataacaattgcaacataatcaaatcacatcaagttaaataacaaatcattctcaatagtttct 15746  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaagctt 186  Q
    |||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||    
T  15747 tgatcattcaacaacaattctagtaagtataattcaatccataattcacttcataatcatttaacaattcataaagctt 15825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 14708736 - 14708507
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||| ||||||||||||| |||| |||||||||||||||||||||    
T  14708736 catcatcaacttattcataatcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagttagataacaaatcattctcaatagtttct 14708637  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaagcttaacagttcatgatcattatct 207  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| || ||||||||||| |||||||||||||| |||||    
T  14708636 tgatcattcaacaacaattcaagtaagtataattcaatccataattcacttcataatcatttaacaactcataaagcttcacagttcatgatcagtatct 14708537  T
Q  208 ttaataggtcacactaagtaccgaaagctc 237  Q
    |||||||||||||||||||||| |||||||    
T  14708536 ttaataggtcacactaagtacctaaagctc 14708507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 42997552 - 42997323
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    |||||||||||||||||||||||||||||| |||||||  ||| ||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  42997552 catcatcaacttattcataatcatgcaactcagttaaataacatttgcagcataatcaaatcacatcaagttaaataacaaatcattctcaatagtttct 42997453  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaagcttaacagttcatgatcattatct 207  Q
    |||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  42997452 tgatcatttaacaacaattcaagtaagtataattcaatccataattcacttcataatcatttaacaattcataaagcttcacagttcatgatcattatct 42997353  T
Q  208 ttaataggtcacactaagtaccgaaagctc 237  Q
    ||||||||||||| |||||||| |||||||    
T  42997352 ttaataggtcacattaagtacctaaagctc 42997323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 8 - 234
Target Start/End: Complemental strand, 28569546 - 28569320
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||| ||||||||| |||||||| |||||||||||||||||||||    
T  28569546 catcatcaacttattcataatcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaacttaaataacaaatcattctcaatagtttct 28569447  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaagcttaacagttcatgatcattatct 207  Q
    |||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||| | |||||||||||||| ||||||||| ||||||||||    
T  28569446 tgatcattcaacaacaattcaagtgagtataattcaatccataattcacttcataatcatttgacaattcataaagcttcacagttcataatcattatct 28569347  T
Q  208 ttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||| ||||| ||||    
T  28569346 ttaataggtcacactatgtacctaaag 28569320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 8 - 217
Target Start/End: Original strand, 3412802 - 3413009
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||||||||||||| ||||||||||||||| ||  ||||| ||| ||||||||| |||||||| ||||||||| ||||||||||||||| |||||    
T  3412802 catcatcaacttattcatactcatgcaacttagtttaataacaatagcagcataatcaaatcacatcaggttaaataacaaatcattctcaataatttct 3412901  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaagcttaacagttcatgatcattatct 207  Q
    |||||||||||||| ||||||| ||| |||||||  ||||||||||||||||||||||| |||| |||||||||||||| ||||||| | |||| |||||    
T  3412902 tgatcattcaacaataattcaa-taaatataattcaatccataattcacttcataatcacttaacaattcataaagcttcacagttc-tcatcaatatct 3412999  T
Q  208 ttaataggtc 217  Q
    ||||||||||    
T  3413000 ttaataggtc 3413009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 10 - 179
Target Start/End: Original strand, 15224800 - 15224969
Alignment:
Q  10 tcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttcttg 109  Q
    ||||||||||||||||| || |||||||||||||||  ||||||||| ||||||||| |||||||||||||||||| ||||||||||| | |||||||||    
T  15224800 tcatcaacttattcatattcttgcaacttagttaaataacaattgcagcataatcaaatcacatcaagttaaataacaaatcattctcgaaagtttcttg 15224899  T
Q  110 atcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcat 179  Q
    ||||||||||||||||||||||| ||||||||  || ||||||||||||| ||||||||||| |||||||    
T  15224900 atcattcaacaacaattcaagtaggtataattcaattcataattcacttcttaatcatttaacaattcat 15224969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 8 - 182
Target Start/End: Original strand, 18236895 - 18237068
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||||||||||||| ||||||||||||||||||  ||||||||| ||||||||| |||||||| ||| ||||| ||||||||||||| | |||||    
T  18236895 catcatcaacttattcatactcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaggtttaataacaaatcattctcaacaatttct 18236994  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaa 182  Q
    | |||||||||||| ||||||||||| || || |  ||||||||||||||||||||||| |||| ||||||||||    
T  18236995 taatcattcaacaataattcaagtaaatacaa-tcaatccataattcacttcataatcacttaacaattcataaa 18237068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 8 - 220
Target Start/End: Complemental strand, 16243502 - 16243290
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    |||||||| ||||||||||  |||||||||||||||||  ||| ||||| ||||||||| |||||||| ||| ||||| ||||||||||||| | |||||    
T  16243502 catcatcagcttattcatacacatgcaacttagttaaataacatttgcagcataatcaaatcacatcaggtttaataacaaatcattctcaacaatttct 16243403  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcat-aaagcttaacagttcatgatcattatc 206  Q
    |||||||||||||| |||||||||||    || |  ||||||| |||| |||| ||||  |||| ||||||| ||| ||| ||||||||   ||||||||    
T  16243402 tgatcattcaacaataattcaagtaaaggcaa-tcaatccatatttcatttcacaatctcttaacaattcataaaaacttcacagttcacagtcattatc 16243304  T
Q  207 tttaataggtcaca 220  Q
    ||||||||||||||    
T  16243303 tttaataggtcaca 16243290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 8 - 220
Target Start/End: Complemental strand, 19757703 - 19757491
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    |||||||| ||||||||||| |||||||||||||||||  ||| ||||| ||||||||| ||||| || ||| ||||| ||||||||||||| | |||||    
T  19757703 catcatcagcttattcataaacatgcaacttagttaaataacatttgcagcataatcaaatcacaacaggtttaataacaaatcattctcaacaatttct 19757604  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcat-aaagcttaacagttcatgatcattatc 206  Q
    |||||||||||||| |||||||||||    || |  ||||||| |||| |||||||||  |||| | ||||| ||| ||| ||||||||   ||||||||    
T  19757603 tgatcattcaacaataattcaagtaaaggcaa-tcaatccatatttcatttcataatctcttaacagttcataaaaacttcacagttcacagtcattatc 19757505  T
Q  207 tttaataggtcaca 220  Q
    ||||||||||||||    
T  19757504 tttaataggtcaca 19757491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 8 - 220
Target Start/End: Original strand, 19782103 - 19782315
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    |||||||| ||||||||||| |||||||||||||||||  ||| ||||| ||||||||| ||||| || ||| ||||| ||||||||||||| | |||||    
T  19782103 catcatcagcttattcataaacatgcaacttagttaaataacatttgcagcataatcaaatcacaacaggtttaataacaaatcattctcaacaatttct 19782202  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcat-aaagcttaacagttcatgatcattatc 206  Q
    |||||||||||||| |||||||||||    || |  ||||||| |||| |||||||||  |||| | ||||| ||| ||| ||||||||   ||||||||    
T  19782203 tgatcattcaacaataattcaagtaaaggcaa-tcaatccatatttcatttcataatctcttaacagttcataaaaacttcacagttcacagtcattatc 19782301  T
Q  207 tttaataggtcaca 220  Q
    ||||||||||||||    
T  19782302 tttaataggtcaca 19782315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 8 - 133
Target Start/End: Complemental strand, 26243767 - 26243642
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    |||||||| ||||||||||| |||||||||||||||||  ||| ||||| ||||||||| |||||||||| | ||||| ||||||||||||| | |||||    
T  26243767 catcatcagcttattcataaacatgcaacttagttaaataacatttgcagcataatcaaatcacatcaagcttaataacaaatcattctcaacaatttct 26243668  T
Q  108 tgatcattcaacaacaattcaagtaa 133  Q
    |||||||||||||| |||||||||||    
T  26243667 tgatcattcaacaataattcaagtaa 26243642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 219
Target Start/End: Original strand, 2014782 - 2014993
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    |||||||| ||||||||||  |||||||||||||||||  ||| ||||| ||||||||| |||||||| ||| ||||| ||||||||| ||| | |||||    
T  2014782 catcatcagcttattcatacacatgcaacttagttaaataacatttgcagcataatcaaatcacatcaggtttaataacaaatcattcgcaacaatttct 2014881  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcat-aaagcttaacagttcatgatcattatc 206  Q
    ||||||||| |||| |||||||||||    || |  ||||||| |||| ||||||||   |||| ||||||| ||| ||| ||||||||   ||||||||    
T  2014882 tgatcattccacaataattcaagtaaaggcaa-tcaatccatatttcatttcataatttcttaacaattcataaaaacttcacagttcacagtcattatc 2014980  T
Q  207 tttaataggtcac 219  Q
    |||||||||||||    
T  2014981 tttaataggtcac 2014993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 194
Target Start/End: Complemental strand, 1951864 - 1951677
Alignment:
Q  8 catcatcaactta-ttcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttc 106  Q
    ||||||||||||| |||| | ||||||||||||||||||  ||||||||| ||||||||| |||||||||| | ||||| || ||||| |||| | ||||    
T  1951864 catcatcaacttaattcagactcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagcttaataacaattcattttcaacaatttc 1951765  T
Q  107 ttgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcat-aaagcttaacagttc 194  Q
    |||||||||||| || ||||||||||| |  || |  |||||||||| |||| ||| ||| |||||| ||||| ||||||| |||||||    
T  1951764 ttgatcattcaataataattcaagtaaatgcaa-tcaatccataatttactttatattcacttaaaatttcataaaagcttcacagttc 1951677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 223
Target Start/End: Original strand, 23139275 - 23139489
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    |||||||| ||||||||||| |||||||||||||||||  ||| ||||| ||||||||| |||||||||| | ||||| ||||||||||||| |  ||||    
T  23139275 catcatcagcttattcataaacatgcaacttagttaaataacatttgcagcataatcaaatcacatcaagcttaataacaaatcattctcaaca-attct 23139373  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaa-gcttaacagttcatgatcattatc 206  Q
    |||||| | ||||| |||||||||| |   || |  ||||||||||||||||||||||| |||| |  ||||||| |||| |||||||    ||| ||||    
T  23139374 tgatcaattaacaataattcaagtatgggcaa-tcaatccataattcacttcataatcacttaatatatcataaaggcttcacagttctcagtcaatatc 23139472  T
Q  207 tttaataggtcacacta 223  Q
    | ||||||||| |||||    
T  23139473 tctaataggtctcacta 23139489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 217
Target Start/End: Complemental strand, 18222481 - 18222271
Alignment:
Q  8 catcatcaactta-ttcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttc 106  Q
    |||||| |||||| |||| | ||||||||||||||||||  ||||||||| ||||||||| |||||||||| | ||||| || ||||| |||| | || |    
T  18222481 catcatgaacttaattcagactcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagcttaataacaattcattttcaacaattcc 18222382  T
Q  107 ttgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcat-aaagcttaacagttcatgatcattat 205  Q
    |||||||||||| || ||||||||||| || || |  ||||||||||||||| ||| ||| |||| |  |||| ||||||| |||||||    |||||||    
T  18222381 ttgatcattcaataataattcaagtaaatacaa-tcaatccataattcactttatattcacttaacatatcataaaagcttcacagttctcagtcattat 18222283  T
Q  206 ctttaataggtc 217  Q
    ||||||||||||    
T  18222282 ctttaataggtc 18222271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 8 - 194
Target Start/End: Complemental strand, 18602833 - 18602662
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    |||| |||||||||||||| ||||| ||||||||| |   ||||||||| ||||||||| |||||||| |||||| || ||||||||||||||  |||||    
T  18602833 catcgtcaacttattcatactcatgaaacttagtttagtaacaattgcagcataatcaaatcacatcaggttaaacaacaaatcattctcaatcatttct 18602734  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaagcttaacagttc 194  Q
      |||||||||||| ||||||               ||||||||||||||||||||||| |||| |||||||||||||| |||||||    
T  18602733 caatcattcaacaataattca---------------atccataattcacttcataatcacttaacaattcataaagcttcacagttc 18602662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 171
Target Start/End: Complemental strand, 17152589 - 17152427
Alignment:
Q  8 catcatcaactta-ttcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttc 106  Q
    ||||||||||||| |||| | ||||||||||||||||||  ||| ||||| ||||||||| |||||||||| | ||||| || ||||| |||| | || |    
T  17152589 catcatcaacttaattcagactcatgcaacttagttaaataacatttgcagcataatcaaatcacatcaagcttaataacaattcatt-tcaacaattcc 17152491  T
Q  107 ttgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaa 171  Q
    |||||||||||| || ||||||||||| || || |  ||||||||||||||| ||| ||| ||||    
T  17152490 ttgatcattcaataataattcaagtaaatacaa-tcaatccataattcactttatattcacttaa 17152427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 217
Target Start/End: Original strand, 9530438 - 9530646
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||  || |||||||  ||||||||||||||||  ||| ||||| ||||||||| |||||||||| | ||||| ||||||||||||| |  ||||    
T  9530438 catcatcagtttgttcataaaaatgcaacttagttaaatgacatttgcagcataatcaaatcacatcaagcttaataataaatcattctcaaca-attct 9530536  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcat-aaagcttaacagttcatgatcattatc 206  Q
    |||||| | ||||| ||||| |||||    |||  | |||||| |||| ||| |||||| |||| || |||| ||||||| |||||||  | ||||||||    
T  9530537 tgatcaattaacaataattcgagtaaaggcaatcac-tccatatttcatttcctaatcacttaacaaatcataaaagcttcacagttctcggtcattatc 9530635  T
Q  207 tttaataggtc 217  Q
    |||||||||||    
T  9530636 tttaataggtc 9530646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 43256514 - 43256428
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcatt 94  Q
    ||||||||||||||||||| ||||||||||||||||||  ||||||| | ||||||||| |||||||||| | ||||| || |||||    
T  43256514 catcatcaacttattcatactcatgcaacttagttaaataacaattgtagcataatcaaatcacatcaagcttaataacaattcatt 43256428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 217
Target Start/End: Complemental strand, 18228956 - 18228746
Alignment:
Q  8 catcatcaactta-ttcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttc 106  Q
    ||||||||||||| |||| | ||||||||||||||||||  | ||||||| ||||||||| |||||||||| |  |||| || |||||  ||| | || |    
T  18228956 catcatcaacttaattcagactcatgcaacttagttaaataaaaattgcagcataatcaaatcacatcaagcttcataacaattcatttccaacaattcc 18228857  T
Q  107 ttgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcat-aaagcttaacagttcatgatcattat 205  Q
    |||||||||||| || |||||||||||  | || |  ||||||||||||||| ||| ||| |||| |  || | ||||||| |||||||    |||||||    
T  18228856 ttgatcattcaataataattcaagtaaagacaa-tcaatccataattcactttatattcacttaacatatcgtaaaagcttcacagttctcagtcattat 18228758  T
Q  206 ctttaataggtc 217  Q
    ||||||||||||    
T  18228757 ctttaataggtc 18228746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 45938152 - 45938243
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaa 99  Q
    |||||||| ||||| ||||  |||||| ||||||||||  ||| ||||| ||||||||| |||||||||| | ||||| |||||||||||||    
T  45938152 catcatcagcttatacatagacatgcatcttagttaaataacatttgcagcataatcaaatcacatcaagcttaataacaaatcattctcaa 45938243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 133
Target Start/End: Complemental strand, 22634525 - 22634398
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaa--gttaaataaaaaatcattctcaatagttt 105  Q
    ||||||||||||||||| |  ||||||||||||||||   ||||| ||| ||||||||  |||||||||  | | ||||  || ||||| |||| | |||    
T  22634525 catcatcaacttattcagacgcatgcaacttagttaattaacaatagcagcataatcagatcacatcaacagcttaatatcaattcattttcaacaattt 22634426  T
Q  106 cttgatcattcaacaacaattcaagtaa 133  Q
    ||||||||||||| || |||||||||||    
T  22634425 cttgatcattcaataataattcaagtaa 22634398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 10712876 - 10712977
Alignment:
Q  28 tcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttcttgatcattcaacaacaattc 127  Q
    ||||||||||||||| ||| ||||||||| ||||||||||||| |||||| | ||||| || ||||| |||| |   |||||||||||||| || | |||    
T  10712876 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttgatcattcaataatatttc 10712971  T
Q  128 aagtaa 133  Q
    ||||||    
T  10712972 aagtaa 10712977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 10926646 - 10926747
Alignment:
Q  28 tcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttcttgatcattcaacaacaattc 127  Q
    ||||||||||||||| ||| ||||||||| ||||||||||||| |||||| | ||||| || ||||| |||| |   |||||||||||||| || | |||    
T  10926646 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttgatcattcaataatatttc 10926741  T
Q  128 aagtaa 133  Q
    ||||||    
T  10926742 aagtaa 10926747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 18609405 - 18609319
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcatt 94  Q
    |||| |||||||||||||| ||||| ||||||||| |   ||||||||| ||||||||| |||||| | |||||| || ||||||||    
T  18609405 catcgtcaacttattcatactcatgaaacttagtttagtaacaattgcagcataatcaaatcacatgaggttaaacaacaaatcatt 18609319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 14954250 - 14954201
Alignment:
Q  28 tcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaag 77  Q
    ||||||||||||||| ||| ||||||||| ||||||||||||| ||||||    
T  14954250 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaag 14954201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 25689893 - 25689942
Alignment:
Q  28 tcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaag 77  Q
    ||||||||||||||| ||| ||||||||| ||||||||||||| ||||||    
T  25689893 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaag 25689942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 4561246 - 4561210
Alignment:
Q  198 atcattatctttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  4561246 atcattatctttaataggtcacactatgtacctaaag 4561210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 5756850 - 5756814
Alignment:
Q  198 atcattatctttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  5756850 atcattatctttaataggtcacactatgtacctaaag 5756814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 9556724 - 9556760
Alignment:
Q  198 atcattatctttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  9556724 atcattatctttaataggtcacactatgtacctaaag 9556760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 33742571 - 33742607
Alignment:
Q  198 atcattatctttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  33742571 atcattatctttaataggtcacactatgtacctaaag 33742607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 8 - 234
Target Start/End: Complemental strand, 21885291 - 21885065
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  21885291 catcatcaacttattcataatcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagttaaataacaaatcattctcaatagtttct 21885192  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaagcttaacagttcatgatcattatct 207  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| | |||||||||||||| ||||||||| || |||||||    
T  21885191 tgatcattcaacaacaattcaagtaagtataattcaatccataattcacttcataatcatttgacaattcataaagcttcacagttcataataattatct 21885092  T
Q  208 ttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||| ||||| ||||    
T  21885091 ttaataggtcacactatgtacctaaag 21885065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 8 - 234
Target Start/End: Original strand, 26172468 - 26172694
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||||||| |||||||||| |||||||||||||  ||||||||| ||||||||| |||||||||||||||||| ||||| |||||||||||||||    
T  26172468 catcatcaacttaatcataatcattcaacttagttaaataacaattgcagcataatcaaatcacatcaagttaaataacaaatcgttctcaatagtttct 26172567  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaagcttaacagttcatgatcattatct 207  Q
    |||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||| | |||||||||||||| ||||||||| ||||||||||    
T  26172568 tgatcattcaacaacaattcaagtaagtgtaattcaatccataattcacttcataatcatttgacaattcataaagcttcacagttcataatcattatct 26172667  T
Q  208 ttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||| ||||| ||||    
T  26172668 ttaataggtcacactatgtacctaaag 26172694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 8 - 217
Target Start/End: Original strand, 4036223 - 4036433
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatag-tttc 106  Q
    ||||||||||||||||||| ||||||||||||||| ||  ||||||||| ||||||||| |||||||| ||||||||| |||||||||||||||| ||||    
T  4036223 catcatcaacttattcatattcatgcaacttagtttaataacaattgcagcataatcaaatcacatcaggttaaataacaaatcattctcaatagttttc 4036322  T
Q  107 ttgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaagcttaacagttcatgatcattatc 206  Q
    ||||||||||||||| |||||||| ||||||| ||  |||||||||||||||||||||||||| | |||||||||||||| ||||||| || ||| ||||    
T  4036323 ttgatcattcaacaataattcaagcaagtatatttcaatccataattcacttcataatcatttgacaattcataaagcttcacagttcttggtcaatatc 4036422  T
Q  207 tttaataggtc 217  Q
     ||| ||||||    
T  4036423 attattaggtc 4036433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 8 - 182
Target Start/End: Complemental strand, 25229508 - 25229334
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||||||||||||| ||||||||||||||| ||  ||||||||| ||||||||| |||||||| ||||||||| ||||||||||||||||||| |    
T  25229508 catcatcaacttattcatattcatgcaacttagtttaataacaattgcagcataatcaaatcacatcaggttaaataacaaatcattctcaatagtttat 25229409  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaa 182  Q
    |||||||||||||| |||||||| ||||||| ||  |||||||||||||||||||||||||||| ||||||||||    
T  25229408 tgatcattcaacaataattcaagcaagtatatttcaatccataattcacttcataatcatttaacaattcataaa 25229334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 8 - 182
Target Start/End: Complemental strand, 25293664 - 25293490
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||||||||||||| ||||||||||||||| ||  ||||||||| ||||||||| |||||||| ||||||||| ||||||||||||||||||| |    
T  25293664 catcatcaacttattcatattcatgcaacttagtttaataacaattgcagcataatcaaatcacatcaggttaaataacaaatcattctcaatagtttat 25293565  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaa 182  Q
    |||||||||||||| |||||||| ||||||| ||  |||||||||||||||||||||||||||| ||||||||||    
T  25293564 tgatcattcaacaataattcaagcaagtatatttcaatccataattcacttcataatcatttaacaattcataaa 25293490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 10 - 179
Target Start/End: Original strand, 10752949 - 10753118
Alignment:
Q  10 tcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttcttg 109  Q
    ||||||||||||||||| || |||||||||||||||  ||||||||| |||||| || |||||||||||||||||| ||||||||||| | |||||||||    
T  10752949 tcatcaacttattcatactcttgcaacttagttaaataacaattgcagcataattaaatcacatcaagttaaataacaaatcattctcgaaagtttcttg 10753048  T
Q  110 atcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcat 179  Q
    |||||||||||| |||||||||| ||||||||  |||||||||||||||| ||||||||||| |||||||    
T  10753049 atcattcaacaagaattcaagtaggtataattcaatccataattcacttcttaatcatttaacaattcat 10753118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 220
Target Start/End: Original strand, 33409232 - 33409444
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    |||||||| ||||||||||  |||||||||||||||||  ||| ||||| ||||||||| ||||| || ||| ||||| ||||||||||||| | |||||    
T  33409232 catcatcagcttattcatagacatgcaacttagttaaataacatttgcagcataatcaaatcacaacaggtttaataacaaatcattctcaacaatttct 33409331  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcat-aaagcttaacagttcatgatcattatc 206  Q
    |||||||||||||| |||||||||||    || |  ||||||| |||| |||||||||  |||| | ||||| ||| ||| ||||||||   ||||||||    
T  33409332 tgatcattcaacaataattcaagtaaaggcaa-tcaatccatatttcatttcataatctcttaacagttcataaaaacttcacagttcacagtcattatc 33409430  T
Q  207 tttaataggtcaca 220  Q
    ||||||||||||||    
T  33409431 tttaataggtcaca 33409444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 16674156 - 16674281
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    |||||||| ||||||| ||| |||||||||||||||||  ||| ||||| ||||||||| ||||| || ||| ||||| ||||||||||||| | |||||    
T  16674156 catcatcagcttattcttaaacatgcaacttagttaaataacatttgcagcataatcaaatcacaacaggtttaataacaaatcattctcaacaatttct 16674255  T
Q  108 tgatcattcaacaacaattcaagtaa 133  Q
    |||||||||||||| |||||||||||    
T  16674256 tgatcattcaacaataattcaagtaa 16674281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 8 - 194
Target Start/End: Original strand, 18774206 - 18774394
Alignment:
Q  8 catcatcaactta-ttcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttc 106  Q
    ||||||||||||| |||| | ||||||||| ||||| ||  ||||||||| ||||||||| |||||||||| | ||||| |||||||| |||| | ||||    
T  18774206 catcatcaacttaattcagactcatgcaacatagtttaataacaattgcagcataatcaaatcacatcaagcttaataacaaatcattttcaacaatttc 18774305  T
Q  107 ttgatcattcaacaacaattcaagtaagtataatttcatccataa-ttcacttcataatcatttaaaaattcat-aaagcttaacagttc 194  Q
    ||||||||||||||| ||||||||||| || || |  |||||||| ||||||||||||||| | || ||||||| ||||||| |||||||    
T  18774306 ttgatcattcaacaataattcaagtaaatacaa-tcaatccataatttcacttcataatcactgaacaattcataaaagcttcacagttc 18774394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 182
Target Start/End: Original strand, 18784049 - 18784224
Alignment:
Q  8 catcatcaactta-ttcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttc 106  Q
    ||||||||||||| |||| | ||||||||| ||||| ||  ||||||||| ||||||||| |||||||||| | ||||| |||||||| |||| | ||||    
T  18784049 catcatcaacttaattcagactcatgcaacatagtttaataacaattgcagcataatcaaatcacatcaagcttaataacaaatcattttcaacaatttc 18784148  T
Q  107 ttgatcattcaacaacaattcaagtaagtataatttcatccataa-ttcacttcataatcatttaaaaattcataaa 182  Q
    || |||||||||||| ||||||||||| || || |  |||||||| ||||||||||||||| | || ||||||||||    
T  18784149 tttatcattcaacaataattcaagtaaatacaa-tcaatccataatttcacttcataatcactgaacaattcataaa 18784224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 18355961 - 18356047
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcatt 94  Q
    ||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||| |||||||||||| ||||| || |||||    
T  18355961 catcatcaacttattcatactcatgcaacttagttaaataacaattgcaacataatcaaatcacatcaagtttaataacaattcatt 18356047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 10 - 133
Target Start/End: Complemental strand, 17718538 - 17718416
Alignment:
Q  10 tcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttcttg 109  Q
    |||||| ||||||||||| |||||||||||||||||  ||| ||||  ||||||||| |||||||| ||| ||||| | ||||||||||| | |||||||    
T  17718538 tcatcagcttattcataa-catgcaacttagttaaataacatttgccgcataatcaaatcacatcatgttcaataacagatcattctcaacaatttcttg 17718440  T
Q  110 atcattcaacaacaattcaagtaa 133  Q
    ||||||||| || |||||||||||    
T  17718439 atcattcaataataattcaagtaa 17718416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 166
Target Start/End: Complemental strand, 24533150 - 24532993
Alignment:
Q  8 catcatcaacttatt-cataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttc 106  Q
    ||||||||||||||| || | ||||||||| ||||| ||  ||||||||||||||||||| |||| ||||| | ||||| ||||||||||||| |  |||    
T  24533150 catcatcaacttatttcagactcatgcaacatagtttaataacaattgcaacataatcaaatcacgtcaagcttaataacaaatcattctcaaca-attc 24533052  T
Q  107 ttgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatca 166  Q
    ||||||| ||||||| ||||||||||||   || |  |||||||||||||||||||||||    
T  24533051 ttgatcaatcaacaataattcaagtaagggcaa-tcaatccataattcacttcataatca 24532993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 26666233 - 26666018
Alignment:
Q  8 catcatcaacttatt-cataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttc 106  Q
    ||||||||||||||| || | ||||||||| ||||| ||  ||||||||| ||||||||| |||| ||||| | ||||| ||||||||||||| |  |||    
T  26666233 catcatcaacttatttcagactcatgcaacatagtttaataacaattgcagcataatcaaatcacgtcaagcttaataacaaatcattctcaaca-attc 26666135  T
Q  107 ttgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaa-gcttaacagttcatgatcattat 205  Q
    ||||||| ||||||| ||||||||||||   || |  ||||||||||||||||||||||| |||| |  ||||||| |||| |||||||    ||| |||    
T  26666134 ttgatcaatcaacaataattcaagtaagggcaa-tcaatccataattcacttcataatcacttaatatatcataaaggcttcacagttctcagtcaatat 26666036  T
Q  206 ctttaataggtcacacta 223  Q
    || ||||||||| |||||    
T  26666035 ctctaataggtctcacta 26666018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 26937830 - 26937615
Alignment:
Q  8 catcatcaacttatt-cataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttc 106  Q
    ||||||||||||||| || | ||||||||| ||||| ||  ||||||||| ||||||||| |||| ||||| | ||||| ||||||||||||| |  |||    
T  26937830 catcatcaacttatttcagactcatgcaacatagtttaataacaattgcagcataatcaaatcacgtcaagcttaataacaaatcattctcaaca-attc 26937732  T
Q  107 ttgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaa-gcttaacagttcatgatcattat 205  Q
    ||||||| ||||||| ||||||||||||   || |  ||||||||||||||||||||||| |||| |  ||||||| |||| |||||||    ||| |||    
T  26937731 ttgatcaatcaacaataattcaagtaagggcaa-tcaatccataattcacttcataatcacttaatatatcataaaggcttcacagttctcagtcaatat 26937633  T
Q  206 ctttaataggtcacacta 223  Q
    || ||||||||| |||||    
T  26937632 ctctaataggtctcacta 26937615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 217
Target Start/End: Complemental strand, 26742849 - 26742639
Alignment:
Q  8 catcatcaactta-ttcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttc 106  Q
    ||||||||||||| |||| | ||||||||||||||||||  ||| ||||| ||||||||| |||||||| | | ||||| || |||||||||| | || |    
T  26742849 catcatcaacttagttcagactcatgcaacttagttaaataacatttgcagcataatcaaatcacatcaggcttaataacaactcattctcaacaattcc 26742750  T
Q  107 ttgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcat-aaagcttaacagttcatgatcattat 205  Q
    |||||||||||| || ||||| ||||| || || |  | ||||||||||||| ||||||| |||| |  |||| ||||||| |||||||    ||| |||    
T  26742749 ttgatcattcaataataattcgagtaaatacaa-tcaaaccataattcactttataatcacttaatatatcataaaagcttcacagttctcagtcaatat 26742651  T
Q  206 ctttaataggtc 217  Q
    ||||||||||||    
T  26742650 ctttaataggtc 26742639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 20911272 - 20911186
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcatt 94  Q
    ||||||||||||||||||| ||||||||||||||||||  ||||||||| ||||||||| |||||||||| | ||||| || |||||    
T  20911272 catcatcaacttattcatactcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagcttaataacaattcatt 20911186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 217
Target Start/End: Original strand, 42805423 - 42805633
Alignment:
Q  8 catcatcaactta-ttcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttc 106  Q
    ||||||||||||| |||| | ||||||||||| ||||||  ||| ||||| ||||||||| |||||||||| | ||||| || ||||| |||| | || |    
T  42805423 catcatcaacttaattcagactcatgcaacttggttaaataacatttgcagcataatcaaatcacatcaagcttaataacaattcattttcaacaattcc 42805522  T
Q  107 ttgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcat-aaagcttaacagttcatgatcattat 205  Q
    ||||||||| || || ||||||||||| || || |  ||||||||||||||| ||| ||| |||| |  |||| ||||||| |||||||    ||| |||    
T  42805523 ttgatcatttaataataattcaagtaaata-aaatcaatccataattcactttatattcacttaacatatcataaaagcttcacagttctcagtcaatat 42805621  T
Q  206 ctttaataggtc 217  Q
    ||||||||||||    
T  42805622 ctttaataggtc 42805633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 133
Target Start/End: Complemental strand, 21340869 - 21340744
Alignment:
Q  8 catcatcaacttatt-cataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttc 106  Q
    ||||||||||||||| || | ||||||||||||||||||  ||| ||||| ||||||||| |||||||||| | ||||| |||||||||| || |  |||    
T  21340869 catcatcaacttatttcagactcatgcaacttagttaaataacatttgcagcataatcaaatcacatcaagcttaataacaaatcattctaaaca-attc 21340771  T
Q  107 ttgatcattcaacaacaattcaagtaa 133  Q
    ||||||| | ||||| ||||| |||||    
T  21340770 ttgatcaattaacaataattcgagtaa 21340744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 171
Target Start/End: Original strand, 20232554 - 20232716
Alignment:
Q  8 catcatcaacttatt-cataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttc 106  Q
    ||||||||||||||| || | | ||||||| ||||| ||  ||||||||| ||||||||| |||||||||| | ||||| || |||||||||| | ||      
T  20232554 catcatcaacttatttcagacttatgcaacatagtttaataacaattgcagcataatcaaatcacatcaagcttaataacaattcattctcaacaatta- 20232652  T
Q  107 ttgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaa 171  Q
    ||||||| ||||||| |||||||||||    || |  ||||||||||||||||||||||| ||||    
T  20232653 ttgatcaatcaacaataattcaagtaaaggcaa-tcaatccataattcacttcataatcacttaa 20232716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 10753387 - 10753488
Alignment:
Q  28 tcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttcttgatcattcaacaacaattc 127  Q
    ||||||||||||||| ||| ||||||||| ||||||||||||| |||||| | ||||| || ||||| |||| |   |||||||||||||| || | |||    
T  10753387 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttgatcattcaataatatttc 10753482  T
Q  128 aagtaa 133  Q
    ||||||    
T  10753483 aagtaa 10753488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 23535690 - 23535633
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatca 65  Q
    ||||||||||||||||| | ||||||||||||||||||  ||||| ||| ||||||||    
T  23535690 catcatcaacttattcagactcatgcaacttagttaaataacaatagcagcataatca 23535633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 19472632 - 19472596
Alignment:
Q  198 atcattatctttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  19472632 atcattatctttaataggtcacactatgtacctaaag 19472596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 20296041 - 20296077
Alignment:
Q  198 atcattatctttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  20296041 atcattatctttaataggtcacactatgtacctaaag 20296077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0585 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: scaffold0585
Description:

Target: scaffold0585; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 8 - 237
Target Start/End: Original strand, 9338 - 9567
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  9338 catcatcaacttattcataatcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagttaaataacaaatcattctcaatagtttct 9437  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaagcttaacagttcatgatcattatct 207  Q
    |||||||| |||||||| |||||||||||  |||  |||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||    
T  9438 tgatcatttaacaacaactcaagtaagtaggattcaatccataattcacttcataatcatttaacaattcataaagcttcgcagttcatgatcattatct 9537  T
Q  208 ttaataggtcacactaagtaccgaaagctc 237  Q
    |||||||||||||||||||||| |||||||    
T  9538 ttaataggtcacactaagtacctaaagctc 9567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 8 - 237
Target Start/End: Original strand, 62264 - 62493
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||| |||||||| ||||||||| || ||||||||||||||||||    
T  62264 catcatcaacttattcataatcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaggttaaataacaactcattctcaatagtttct 62363  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaagcttaacagttcatgatcattatct 207  Q
    |||||||||||||| |||||||| ||||||| ||  |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  62364 tgatcattcaacaataattcaagcaagtatatttcaatccataattcacttcataatcatttaacaattcataaagcttcacagttcatgatcattatct 62463  T
Q  208 ttaataggtcacactaagtaccgaaagctc 237  Q
    |||||||||||||||||||||| |||||||    
T  62464 ttaataggtcacactaagtacctaaagctc 62493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 12907 - 13034
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatca--agttaaataaaaaatcattctcaatagttt 105  Q
    ||||||||||||||||| | |||||||||||||||||   ||||| | | ||||||||  ||||||||  || | ||||  || ||||  |||| | |||    
T  12907 catcatcaacttattcagactcatgcaacttagttaattaacaataggagcataatcagatcacatcaacagcttaatatcaattcatcttcaacaattt 13006  T
Q  106 cttgatcattcaacaacaattcaagtaa 133  Q
    ||||||||||||| || |||||||||||    
T  13007 cttgatcattcaataataattcaagtaa 13034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 19191 - 19227
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaa 44  Q
    ||||||||||||||||| | |||||||||||||||||    
T  19191 catcatcaacttattcagactcatgcaacttagttaa 19227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 8 - 237
Target Start/End: Original strand, 21702291 - 21702520
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    |||||||||||||||||||||||||||||||| |||||  ||||||||| || |||||| |||||||||||||||||| ||||||| |||||||||||||    
T  21702291 catcatcaacttattcataatcatgcaacttaattaaataacaattgcagcaaaatcaaatcacatcaagttaaataacaaatcatactcaatagtttct 21702390  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaagcttaacagttcatgatcattatct 207  Q
    |||||||||||||| |||||||| ||||||||||  |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  21702391 tgatcattcaacaaaaattcaagaaagtataattcaatccataattcacttcataatcatttaacaattcataaagcttcacagttcatgatcattatct 21702490  T
Q  208 ttaataggtcacactaagtaccgaaagctc 237  Q
    |||||||||||||||||||||| |||||||    
T  21702491 ttaataggtcacactaagtacctaaagctc 21702520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 25135774 - 25135545
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    |||||||||||||||||||||||||||||| | |||||  ||| ||||| ||| ||||| |||||||||||||| |||  ||||| ||||||||| ||||    
T  25135774 catcatcaacttattcataatcatgcaactcaattaaataacatttgcagcattatcaaatcacatcaagttaagtaacgaatcactctcaataggttct 25135675  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaagcttaacagttcatgatcattatct 207  Q
    |||||||| |||||||||||||||||||||||||  || |||| |||||||||||||||||||  |||||||||||||  ||||||||||||||||||||    
T  25135674 tgatcatttaacaacaattcaagtaagtataattcaattcatagttcacttcataatcatttatcaattcataaagctccacagttcatgatcattatct 25135575  T
Q  208 ttaataggtcacactaagtaccgaaagctc 237  Q
    ||||||||||||| |||||||| |||||||    
T  25135574 ttaataggtcacattaagtacctaaagctc 25135545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 8 - 194
Target Start/End: Complemental strand, 1587833 - 1587647
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||||||||||||| ||||||||||||||| ||  ||||||||| ||||||||| |||||||| ||||||||| |||||||||||||||||||||    
T  1587833 catcatcaacttattcatattcatgcaacttagtttaataacaattgcagcataatcaaatcacatcaggttaaataacaaatcattctcaatagtttct 1587734  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaagcttaacagttc 194  Q
    |||||||||||||| |||||||| ||||||| ||  |||||||||||||||| ||||||||||| |||||||||||||| |||||||    
T  1587733 tgatcattcaacaataattcaagcaagtatatttcaatccataattcacttcctaatcatttaacaattcataaagcttcacagttc 1587647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 8 - 194
Target Start/End: Complemental strand, 20803656 - 20803469
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||||||||||||| ||||||| ||||||| ||  ||||||||| ||||||||| |||||||| ||||||||| |||||||||||||||||||||    
T  20803656 catcatcaacttattcatattcatgcagcttagtttaataacaattgcagcataatcaaatcacatcaggttaaataacaaatcattctcaatagtttct 20803557  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcat-aaagcttaacagttc 194  Q
    |||||||||||||| |||||||| ||||||| ||  |||||||||||||||||||||||||||| ||||||| ||||||| |||||||    
T  20803556 tgatcattcaacaataattcaagcaagtatatttcaatccataattcacttcataatcatttaacaattcataaaagcttcacagttc 20803469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 10 - 179
Target Start/End: Complemental strand, 31478331 - 31478162
Alignment:
Q  10 tcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttcttg 109  Q
    ||||||||||||||||| || |||||||||||||||  ||||||||| ||||||||| |||||||||||||||||| ||||||||||| | |||||||||    
T  31478331 tcatcaacttattcatactcttgcaacttagttaaataacaattgcagcataatcaaatcacatcaagttaaataacaaatcattctcgaaagtttcttg 31478232  T
Q  110 atcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcat 179  Q
    ||||||||||||||||||||||| ||||||||  |||||||||||||||| ||||||||||| |||||||    
T  31478231 atcattcaacaacaattcaagtaggtataattcaatccataattcacttcttaatcatttaacaattcat 31478162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 10 - 179
Target Start/End: Original strand, 1644293 - 1644462
Alignment:
Q  10 tcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttcttg 109  Q
    ||||||||||||||||| || |||||||||||||||  ||||||||| ||||||||| |||||||||||||||||| ||||||||||| | |||||||||    
T  1644293 tcatcaacttattcatactcttgcaacttagttaaataacaattgcagcataatcaaatcacatcaagttaaataacaaatcattctcgaaagtttcttg 1644392  T
Q  110 atcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcat 179  Q
    ||||||||||||||||||||||| ||||||||  |||||||||||| ||| ||||||||||| |||||||    
T  1644393 atcattcaacaacaattcaagtaggtataattcaatccataattcatttcttaatcatttaacaattcat 1644462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 8 - 182
Target Start/End: Complemental strand, 5616917 - 5616744
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||||||||||||| ||||||||||||||||||  ||||||||| ||||||||| |||||||||||| ||||| ||||||||||||  |  ||||    
T  5616917 catcatcaacttattcatactcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagtttaataacaaatcattctcagcaacttct 5616818  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaa 182  Q
    |||||||||||||| ||||||||||| || || |  ||||||||||||||||||||||| |||| ||||||||||    
T  5616817 tgatcattcaacaataattcaagtaaatacaa-tcaatccataattcacttcataatcacttaacaattcataaa 5616744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 8 - 220
Target Start/End: Complemental strand, 22592905 - 22592694
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    |||||||| ||||||||||  |||||||||||||||||  ||| ||| | ||||||||| ||||| || ||| ||||| ||||||||||||| | |||||    
T  22592905 catcatcagcttattcatagacatgcaacttagttaaataacatttgtagcataatcaaatcacaacaggtttaataacaaatcattctcaacaatttct 22592806  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaagcttaacagttcatgatcattatct 207  Q
    |||||||||||||| |||||||||||    || |  ||||||| |||| |||||||||  |||| | |||||||| ||| ||||||||   | |||||||    
T  22592805 tgatcattcaacaataattcaagtaaaggcaa-tcaatccatatttcatttcataatctcttaacagttcataaaacttcacagttcacagttattatct 22592707  T
Q  208 ttaataggtcaca 220  Q
    |||||||||||||    
T  22592706 ttaataggtcaca 22592694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 8 - 133
Target Start/End: Complemental strand, 9482395 - 9482270
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    |||||||| ||||||||||  |||||||||||||||||  ||| ||||| ||||| ||| |||||||| ||| ||||| ||||||||||||| | |||||    
T  9482395 catcatcagcttattcatacacatgcaacttagttaaataacatttgcagcataagcaaatcacatcaggtttaataacaaatcattctcaacaatttct 9482296  T
Q  108 tgatcattcaacaacaattcaagtaa 133  Q
    |||||||||||||| |||||||||||    
T  9482295 tgatcattcaacaataattcaagtaa 9482270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 217
Target Start/End: Original strand, 12706692 - 12706902
Alignment:
Q  8 catcatcaactta-ttcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttc 106  Q
    ||||||||||||| |||| | ||||||||||||||||||  ||||||||| ||||||||| |||||||||| | ||||| || ||||| |||  | ||||    
T  12706692 catcatcaacttaattcagactcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagcttaataacaattcattttcagcaatttc 12706791  T
Q  107 ttgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcat-aaagcttaacagttcatgatcattat 205  Q
    |||||||||||| || ||||||||||| |  || |  |||||||||||| || ||| ||| |||| | ||||| ||||||| |||||||    ||| |||    
T  12706792 ttgatcattcaaaaataattcaagtaaatgcaa-tcaatccataattcattttatattcacttaacatttcataaaagcttcacagttctcagtcaatat 12706890  T
Q  206 ctttaataggtc 217  Q
    ||||||||||||    
T  12706891 ctttaataggtc 12706902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 217
Target Start/End: Original strand, 12496312 - 12496521
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    |||||||| ||||||||||  |||||||||||||||||  ||| ||||| ||||||||  ||||| || |||  |||| ||||||||||||| | |||||    
T  12496312 catcatcagcttattcatagacatgcaacttagttaaataacatttgcagcataatcagatcacaacaggttctataacaaatcattctcaacaatttct 12496411  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcat-aaagcttaacagttcatgatcattatc 206  Q
    |||||||||||||| | |||||||||    || |  ||||||| |||| |||||||||  |||| | ||| | ||||||| ||||||||   ||||||||    
T  12496412 tgatcattcaacaatatttcaagtaaaggcaa-tcaatccatatttcagttcataatctcttaacagttcctaaaagcttcacagttcacagtcattatc 12496510  T
Q  207 tttaataggtc 217  Q
    |||||||||||    
T  12496511 tttaataggtc 12496521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 171
Target Start/End: Original strand, 19662775 - 19662935
Alignment:
Q  10 tcatcaacttatt-cataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttctt 108  Q
    ||||||||||||| || | ||||||||| ||||| ||  ||||||||| ||||||||| |||| ||||| | ||||| ||||||||||||| |  |||||    
T  19662775 tcatcaacttatttcagactcatgcaacatagtttaataacaattgcagcataatcaaatcacgtcaagcttaataacaaatcattctcaaca-attctt 19662873  T
Q  109 gatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaa 171  Q
    ||||| ||||||| ||||||||||||   || |  ||||||||||||||||||||||| ||||    
T  19662874 gatcaatcaacaataattcaagtaagggcaa-tcaatccataattcacttcataatcacttaa 19662935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 23414649 - 23414735
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcatt 94  Q
    ||||||||||||||||||| ||||||||||||||||||  ||||||||| ||||||||| |||||||||| | ||||| || |||||    
T  23414649 catcatcaacttattcatactcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagcttaataacaattcatt 23414735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 27556407 - 27556493
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcatt 94  Q
    ||||||||||||||||||| ||||||||||||||||||  ||||||||| ||||||||| |||||||||| | ||||| || |||||    
T  27556407 catcatcaacttattcatactcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagcttaataacaattcatt 27556493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 2685421 - 2685206
Alignment:
Q  8 catcatcaacttatt-cataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttc 106  Q
    ||||||||||||||| || | ||||||||| ||||| ||  ||||||||| ||||||||| |||| ||||| | ||||| ||||||||||||| |  |||    
T  2685421 catcatcaacttatttcagactcatgcaacatagtttaataacaattgcagcataatcaaatcacgtcaagcttaataacaaatcattctcaaca-attc 2685323  T
Q  107 ttgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaa-gcttaacagttcatgatcattat 205  Q
    ||||||| || |||| ||||||||||||   || |  ||||||||||||||||||||||| |||| |  ||||||| |||| |||||||    ||| |||    
T  2685322 ttgatcaatcgacaataattcaagtaagggcaa-tcaatccataattcacttcataatcacttaatatatcataaaggcttcacagttctcagtcaatat 2685224  T
Q  206 ctttaataggtcacacta 223  Q
    || ||||||||| |||||    
T  2685223 ctctaataggtctcacta 2685206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 8 - 223
Target Start/End: Original strand, 16741209 - 16741425
Alignment:
Q  8 catcatcaactta-ttcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttc 106  Q
    ||||||||||||| |||| |  |||||||||||||| ||  ||||||| | ||||||||| |||||||||| | ||||| || ||| | |||| | ||||    
T  16741209 catcatcaacttaattcagacacatgcaacttagtttaataacaattgtagcataatcaaatcacatcaagcttaataacaattcactgtcaacaatttc 16741308  T
Q  107 ttgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcat-aaagcttaacagttcatgatcattat 205  Q
    |||||||||||| || ||||||||||| |  || |  ||||||||||||||| ||||||| |||| | ||||| ||||||| ||| |||    ||| |||    
T  16741309 ttgatcattcaataataattcaagtaaatgcaa-tcaatccataattcactttataatcacttaacatttcataaaagcttcacaattctcagtcaatat 16741407  T
Q  206 ctttaataggtcacacta 223  Q
    |||||||||||| |||||    
T  16741408 ctttaataggtctcacta 16741425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 16624137 - 16624203
Alignment:
Q  10 tcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaa 76  Q
    ||||||||||||||||| || |||||||||||||||  ||||||||| ||||||||||||| |||||    
T  16624137 tcatcaacttattcatattcttgcaacttagttaaataacaattgcagcataatcaattcatatcaa 16624203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 27416289 - 27416230
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaat 67  Q
    |||||||||| |||||||| ||||||||||||||||||  ||||||||| ||||||||||    
T  27416289 catcatcaacatattcatactcatgcaacttagttaaataacaattgcagcataatcaat 27416230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 31477893 - 31477792
Alignment:
Q  28 tcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttcttgatcattcaacaacaattc 127  Q
    ||||||||||||||| ||| ||||||||| ||||||||||||| |||||| | ||||| || ||||| |||| |   |||||||||||||| || | |||    
T  31477893 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttgatcattcaataatatttc 31477798  T
Q  128 aagtaa 133  Q
    ||||||    
T  31477797 aagtaa 31477792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 22949131 - 22949180
Alignment:
Q  28 tcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaag 77  Q
    ||||||||||||||| ||| ||||||||| ||||||||||||| ||||||    
T  22949131 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaag 22949180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 22953087 - 22953136
Alignment:
Q  28 tcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaag 77  Q
    ||||||||||||||| ||| ||||||||| ||||||||||||| ||||||    
T  22953087 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaag 22953136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 23871575 - 23871624
Alignment:
Q  28 tcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaag 77  Q
    ||||||||||||||| ||| ||||||||| ||||||||||||| ||||||    
T  23871575 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaag 23871624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 23875531 - 23875580
Alignment:
Q  28 tcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaag 77  Q
    ||||||||||||||| ||| ||||||||| ||||||||||||| ||||||    
T  23875531 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaag 23875580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 133
Target Start/End: Original strand, 16760321 - 16760419
Alignment:
Q  31 tgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttcttgatcattcaacaacaattcaag 130  Q
    |||||||||||| ||| ||||||||| ||||||||||||| |||||| | ||||| || ||||| |||| |   |||||||||||||| || | ||||||    
T  16760321 tgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttgatcattcaataatatttcaag 16760416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 11567056 - 11567092
Alignment:
Q  198 atcattatctttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  11567056 atcattatctttaataggtcacactatgtacctaaag 11567092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 12618757 - 12618721
Alignment:
Q  198 atcattatctttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  12618757 atcattatctttaataggtcacactatgtacctaaag 12618721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 23395262 - 23395298
Alignment:
Q  198 atcattatctttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  23395262 atcattatctttaataggtcacactatgtacctaaag 23395298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 23990114 - 23990150
Alignment:
Q  198 atcattatctttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  23990114 atcattatctttaataggtcacactatgtacctaaag 23990150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 11 - 237
Target Start/End: Complemental strand, 16762 - 16536
Alignment:
Q  11 catcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttcttga 110  Q
    ||||||||||||||||||||||| |||||||||||  ||||||||| ||||||||| ||| ||||| |||||||| ||||||||||||||||||||||||    
T  16762 catcaacttattcataatcatgcgacttagttaaataacaattgcagcataatcaaatcatatcaacttaaataacaaatcattctcaatagtttcttga 16663  T
Q  111 tcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaagcttaacagttcatgatcattatcttta 210  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||| |||| |||||| ||||||||| |||| |||||||||||||||||||||||    
T  16662 tcattcaacaacaattcaagtaagtataattcaatccataattcacttcttaattatttaacaattcataatgcttcacagttcatgatcattatcttta 16563  T
Q  211 ataggtcacactaagtaccgaaagctc 237  Q
    ||||||||||||||||||| |||||||    
T  16562 ataggtcacactaagtacctaaagctc 16536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 8 - 237
Target Start/End: Original strand, 35151609 - 35151838
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||| |||||||| ||||||||| ||||||| |||||||| ||||    
T  35151609 catcatcaacttattcataatcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaggttaaataacaaatcatactcaatagcttct 35151708  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaagcttaacagttcatgatcattatct 207  Q
    | |||||||||||| |||||||| ||||||||||  |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||    
T  35151709 tcatcattcaacaataattcaagcaagtataattcaatccataattcacttcataatcatttaacaattcataaagcttcacagttcatgatcagtatct 35151808  T
Q  208 ttaataggtcacactaagtaccgaaagctc 237  Q
    |||||||||||||||||||||| |||||||    
T  35151809 ttaataggtcacactaagtacctaaagctc 35151838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 8 - 237
Target Start/End: Original strand, 16275495 - 16275724
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||| |||||||||||||||||| ||||||| |||||||||||||    
T  16275495 catcatcaacttattcataatcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagttaaataacaaatcatactcaatagtttct 16275594  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaagcttaacagttcatgatcattatct 207  Q
    |||||||||||||||| |||||| ||||||| ||  |||||||||||||||||||||||||||| || |||||||| || ||| |||||||| | |||||    
T  16275595 tgatcattcaacaacagttcaagcaagtatatttcaatccataattcacttcataatcatttaacaactcataaagtttcacaattcatgattagtatct 16275694  T
Q  208 ttaataggtcacactaagtaccgaaagctc 237  Q
    |||||||||||||||||||||| |||||||    
T  16275695 ttaataggtcacactaagtacctaaagctc 16275724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 8 - 194
Target Start/End: Original strand, 14216918 - 14217104
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||||||||||||| ||||||||||||||| ||  ||||||||| ||||||||| |||||||| ||||||||| |||||||||||||||||||||    
T  14216918 catcatcaacttattcatattcatgcaacttagttcaataacaattgcagcataatcaaatcacatcaggttaaataacaaatcattctcaatagtttct 14217017  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaagcttaacagttc 194  Q
    |||||||||||||| |||||||| ||||||| ||  |||||||| ||||||||||||||||||| |||||||||||||| |||||||    
T  14217018 tgatcattcaacaataattcaagcaagtatatttcaatccataactcacttcataatcatttaacaattcataaagcttcacagttc 14217104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 8 - 194
Target Start/End: Original strand, 15728328 - 15728514
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||||||||||||| ||||||||||||||| ||  ||||||||| ||||||||| |||||||| ||||||||| |||||||||||||||||||||    
T  15728328 catcatcaacttattcatattcatgcaacttagtttaataacaattgcagcataatcaaatcacatcaggttaaataacaaatcattctcaatagtttct 15728427  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaagcttaacagttc 194  Q
    |||||||||||||| |||||||| ||||||| ||  |||||||||||||||| ||||||||||| |||||||||||||| |||||||    
T  15728428 tgatcattcaacaataattcaagcaagtatatttcaatccataattcacttcctaatcatttaacaattcataaagcttcacagttc 15728514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 8 - 217
Target Start/End: Complemental strand, 16724732 - 16724524
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||||||||||||| ||||||||||||||| ||  ||||||||| |||||| || |||||||| ||||||||| || ||||||||||||| ||||    
T  16724732 catcatcaacttattcatactcatgcaacttagtttaataacaattgcagcataatgaaatcacatcaggttaaataacaagtcattctcaatag-ttct 16724634  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaagcttaacagttcatgatcattatct 207  Q
    |||||||||||||| ||||||| ||| |||||||  ||||||||||||||||||||||| |||| |||||||||| ||| |||||||    ||| |||||    
T  16724633 tgatcattcaacaataattcaaataaatataattcaatccataattcacttcataatcacttaacaattcataaaacttcacagttctcagtcaatatct 16724534  T
Q  208 ttaataggtc 217  Q
    ||||||||||    
T  16724533 ttaataggtc 16724524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 8 - 217
Target Start/End: Complemental strand, 17701746 - 17701538
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||||||||||||| ||||||||||||||| ||  ||||||||| |||||| || |||||||| ||||||||| || ||||||||||||| ||||    
T  17701746 catcatcaacttattcatactcatgcaacttagtttaataacaattgcagcataatgaaatcacatcaggttaaataacaagtcattctcaatag-ttct 17701648  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaagcttaacagttcatgatcattatct 207  Q
    |||||||||||||| ||||||| ||| |||||||  ||||||||||||||||||||||| |||| |||||||||| ||| |||||||    ||| |||||    
T  17701647 tgatcattcaacaataattcaaataaatataattcaatccataattcacttcataatcacttaacaattcataaaacttcacagttctcagtcaatatct 17701548  T
Q  208 ttaataggtc 217  Q
    ||||||||||    
T  17701547 ttaataggtc 17701538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 8 - 217
Target Start/End: Original strand, 8917430 - 8917639
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||||||||||||| ||||||||||||||| ||  ||||||||||||||||||| |||||||| ||| ||||| ||||||||| ||| | |||||    
T  8917430 catcatcaacttattcatactcatgcaacttagtttaataacaattgcaacataatcaaatcacatcaggtttaataacaaatcattcacaacaatttct 8917529  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcat-aaagcttaacagttcatgatcattatc 206  Q
    |||||||||||||| ||||||||||| |  || |  ||||||||||||||||||||||| |||| ||||| | ||||||| | |||||  | ||| ||||    
T  8917530 tgatcattcaacaataattcaagtaaatgcaa-tcaatccataattcacttcataatcacttaacaattcttaaaagcttcagagttctcggtcaatatc 8917628  T
Q  207 tttaataggtc 217  Q
    |||||||||||    
T  8917629 tttaataggtc 8917639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 8 - 194
Target Start/End: Original strand, 18556976 - 18557162
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    |||||||||||||| |||| ||||||||||||||||||  ||| ||||| ||||||||| |||||||| ||| ||||  |||||||||||||||||||||    
T  18556976 catcatcaacttatacatagtcatgcaacttagttaaataacatttgcagcataatcaaatcacatcaggttcaatagcaaatcattctcaatagtttct 18557075  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaagcttaacagttc 194  Q
    |||||||| ||||| ||||||||||| || || |  |  ||||||||| ||| |||||| |||| || |||||| |||| |||||||    
T  18557076 tgatcatttaacaataattcaagtaaatacaaatcaaatcataattcatttcttaatcacttaacaactcataaggcttcacagttc 18557162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 8 - 182
Target Start/End: Original strand, 13461764 - 13461938
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||||||||||||| |||||||| |||||| ||  ||||||||| ||||||||| |||||||| ||| ||||| ||||||||| ||| | |||||    
T  13461764 catcatcaacttattcatactcatgcaaattagtttaattacaattgcagcataatcaaatcacatcaggtttaataacaaatcattcacaacaatttct 13461863  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataa-ttcacttcataatcatttaaaaattcataaa 182  Q
    |||||||||||||| |||||||||||  | || |  |||||||| ||||||||||||||| |||| ||||||||||    
T  13461864 tgatcattcaacaataattcaagtaaaaacaa-tcaatccataatttcacttcataatcaattaacaattcataaa 13461938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 8 - 220
Target Start/End: Original strand, 13149158 - 13149370
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    |||||||| ||||||||||  |||||||||||||||||  ||| ||||| ||||||||| |||||||| ||| ||||| ||||||||||||| | |||||    
T  13149158 catcatcagcttattcatacacatgcaacttagttaaataacatttgcagcataatcaaatcacatcaggtttaataacaaatcattctcaacaatttct 13149257  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcat-aaagcttaacagttcatgatcattatc 206  Q
    |||||||||||||| |||||||||||    || |  ||||||| |||| |||||||||  |||| | ||||| ||| ||| ||||||||   ||||||||    
T  13149258 tgatcattcaacaataattcaagtaaaggcaa-tcaatccatatttcatttcataatctcttaacagttcataaaaacttcacagttcacagtcattatc 13149356  T
Q  207 tttaataggtcaca 220  Q
    ||||||||||||||    
T  13149357 tttaataggtcaca 13149370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 194
Target Start/End: Original strand, 9593348 - 9593535
Alignment:
Q  8 catcatcaactta-ttcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttc 106  Q
    ||||||||||||| |||| | ||||||||||||||||||  ||||||||| ||||||||| |||||||||| | ||||| || ||||| |||| | ||||    
T  9593348 catcatcaacttaattcagactcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagcttaataacaattcattttcaacaatttc 9593447  T
Q  107 ttgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcat-aaagcttaacagttc 194  Q
    |||||||||||| || ||||||||||| |  || |  |||||||||| |||| ||| ||| |||||| ||||| ||||||| |||||||    
T  9593448 ttgatcattcaataataattcaagtaaatgcaa-tcaatccataatttactttatattcacttaaaatttcataaaagcttcacagttc 9593535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 11987225 - 11987340
Alignment:
Q  18 ttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttcttgatcattca 117  Q
    ||||||| | ||||||||||||||||||  ||||||||| ||||||||| |||||||||| | ||||| |||||||| |||| |||||||||||||||||    
T  11987225 ttattcagactcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagcttaataacaaatcattttcaacagtttcttgatcattca 11987324  T
Q  118 acaacaattcaagtaa 133  Q
    | || || ||||||||    
T  11987325 ataataaatcaagtaa 11987340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 217
Target Start/End: Complemental strand, 19161 - 18951
Alignment:
Q  8 catcatcaactta-ttcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttc 106  Q
    ||||||||||||| |||| | ||||||||||||||||||  ||| ||||| ||||||||| |||||||||| | ||||| || ||||| |||| | || |    
T  19161 catcatcaacttaattcagactcatgcaacttagttaaataacatttgcagcataatcaaatcacatcaagcttaataacaattcattttcaacaattcc 19062  T
Q  107 ttgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcat-aaagcttaacagttcatgatcattat 205  Q
    |||||||||||| || ||||||||||| || || |  ||||||||||||||| ||| ||| |||| |  |||| ||||||| |||||||    ||| |||    
T  19061 ttgatcattcaataataattcaagtaaatacaa-tcaatccataattcactttatattcacttaacatatcataaaagcttcacagttctcagtcaatat 18963  T
Q  206 ctttaataggtc 217  Q
    ||||||||||||    
T  18962 ctttaataggtc 18951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 28 - 159
Target Start/End: Complemental strand, 16457439 - 16457309
Alignment:
Q  28 tcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttcttgatcattcaacaacaattc 127  Q
    ||||||||| ||||| ||  ||||||||| ||||||||| |||||||||| | ||||| |||||||| |||| | |||||||||||||||| || |||||    
T  16457439 tcatgcaacatagtttaataacaattgcagcataatcaaatcacatcaagcttaataacaaatcattttcaacaatttcttgatcattcaataataattc 16457340  T
Q  128 aagtaagtataatttcatccataattcacttc 159  Q
    |||||| || || |  ||||||||||||||||    
T  16457339 aagtaaatacaa-tcaatccataattcacttc 16457309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 13918881 - 13918795
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcatt 94  Q
    ||||||||||||||||||| ||||||||||||||||||  ||||||||| ||||||||| |||||||||| | ||||| || |||||    
T  13918881 catcatcaacttattcatactcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagcttaataacaattcatt 13918795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 25927604 - 25927518
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcatt 94  Q
    ||||||||||||||||||| ||||||||||||||||||  ||||||||| ||||||||| |||||||||  | |||||||| |||||    
T  25927604 catcatcaacttattcatactcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaaacttaataaaaattcatt 25927518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 1859187 - 1859118
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaag 77  Q
    ||||||||||||||||||| ||||||||||||||||||  ||||||||| ||||||||| ||||| ||||    
T  1859187 catcatcaacttattcatactcatgcaacttagttaaataacaattgcagcataatcaaatcacaacaag 1859118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 133
Target Start/End: Original strand, 18425443 - 18425562
Alignment:
Q  10 tcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttcttg 109  Q
    ||||||||||||||||| || |||||||||||||||  ||||||||| ||||||||||||| |||||| | ||||| || ||||| |||| |   |||||    
T  18425443 tcatcaacttattcatattcttgcaacttagttaaataacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttg 18425538  T
Q  110 atcattcaacaacaattcaagtaa 133  Q
    ||||||||| || | |||||||||    
T  18425539 atcattcaataatatttcaagtaa 18425562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 116
Target Start/End: Complemental strand, 2530491 - 2530384
Alignment:
Q  10 tcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattca-catcaagttaaataaaaaatcattctcaatagtttctt 108  Q
    ||||||||||||||||| ||||||||||||||||||  ||||||||| ||||||||| |||  |||||| | ||||| || ||||| |||  | ||||||    
T  2530491 tcatcaacttattcatactcatgcaacttagttaaataacaattgcagcataatcaaatcataatcaagcttaataacaattcattttcagcaatttctt 2530392  T
Q  109 gatcattc 116  Q
    ||||||||    
T  2530391 gatcattc 2530384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 133
Target Start/End: Complemental strand, 13635572 - 13635445
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaa--gttaaataaaaaatcattctcaatagttt 105  Q
    ||||||||||||||||| | |||||||||||||||||   ||||| ||| ||||||||  |||||||||  | | ||||  || ||||| |||| | |||    
T  13635572 catcatcaacttattcagactcatgcaacttagttaattaacaatagcagcataatcagatcacatcaacagcttaatatcaattcattttcaacaattt 13635473  T
Q  106 cttgatcattcaacaacaattcaagtaa 133  Q
    ||||||||||||| || |||||||||||    
T  13635472 cttgatcattcaataataattcaagtaa 13635445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 16583259 - 16583386
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaa--gttaaataaaaaatcattctcaatagttt 105  Q
    ||||||||||||||||| | ||||||||| |||||||   ||||| ||| ||||||||  |||||||||  | | ||||  || ||||| |||| | |||    
T  16583259 catcatcaacttattcagactcatgcaacgtagttaattaacaatagcagcataatcagatcacatcaacagcttaatatcaattcattttcaacaattt 16583358  T
Q  106 cttgatcattcaacaacaattcaagtaa 133  Q
    || ||||||||||||| |||||||||||    
T  16583359 ctcgatcattcaacaataattcaagtaa 16583386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 45170089 - 45169988
Alignment:
Q  28 tcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttcttgatcattcaacaacaattc 127  Q
    ||||||||||||||| ||| ||||||||| ||||||||||||| |||||| | ||||| || ||||| |||| |   |||||||||||||| || | |||    
T  45170089 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttgatcattcaataatatttc 45169994  T
Q  128 aagtaa 133  Q
    ||||||    
T  45169993 aagtaa 45169988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 133
Target Start/End: Complemental strand, 7519460 - 7519335
Alignment:
Q  8 catcatcaactta-ttcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttc 106  Q
    ||||||||| ||| |||| | |||| |||||||||||||  ||||||||| ||||||||| |||||||||| | ||||| || ||||| |||| |   ||    
T  7519460 catcatcaatttaattcagactcatccaacttagttaaataacaattgcagcataatcaaatcacatcaagcttaataacaattcatt-tcaacaacatc 7519362  T
Q  107 ttgatcattcaacaacaattcaagtaa 133  Q
    |||||||||||| || | |||||||||    
T  7519361 ttgatcattcaataatatttcaagtaa 7519335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 134
Target Start/End: Original strand, 6801237 - 6801341
Alignment:
Q  29 catgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttcttgatcattcaacaacaattca 128  Q
    |||||||| ||||| ||  ||||||||| ||||||||| |||  ||||| | ||||| ||||||||||||| |  |||||||||| | ||||| ||||||    
T  6801237 catgcaacatagtttaataacaattgcagcataatcaaatcatgtcaagcttaataacaaatcattctcaaca-attcttgatcaattaacaataattca 6801335  T
Q  129 agtaag 134  Q
    ||||||    
T  6801336 agtaag 6801341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 12318130 - 12318198
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaa 76  Q
    |||||||| |||||||| | |||||||||||||||||   ||||| ||| ||||||||  |||||||||    
T  12318130 catcatcatcttattcagactcatgcaacttagttaattaacaatagcagcataatcagatcacatcaa 12318198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 12704571 - 12704535
Alignment:
Q  198 atcattatctttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  12704571 atcattatctttaataggtcacactatgtacctaaag 12704535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 12715058 - 12715094
Alignment:
Q  198 atcattatctttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  12715058 atcattatctttaataggtcacactatgtacctaaag 12715094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 12718862 - 12718898
Alignment:
Q  198 atcattatctttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  12718862 atcattatctttaataggtcacactatgtacctaaag 12718898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 12723773 - 12723809
Alignment:
Q  198 atcattatctttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  12723773 atcattatctttaataggtcacactatgtacctaaag 12723809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 15580694 - 15580762
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaa 76  Q
    |||||||| |||||||| | ||||||||||||||||||  || || ||| ||||||||  |||||||||    
T  15580694 catcatcatcttattcagactcatgcaacttagttaaataacgatagcagcataatcagatcacatcaa 15580762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 16114435 - 16114471
Alignment:
Q  198 atcattatctttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  16114435 atcattatctttaataggtcacactatgtacctaaag 16114471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 16117588 - 16117624
Alignment:
Q  198 atcattatctttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  16117588 atcattatctttaataggtcacactatgtacctaaag 16117624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 16907113 - 16907077
Alignment:
Q  198 atcattatctttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  16907113 atcattatctttaataggtcacactatgtacctaaag 16907077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 18279597 - 18279633
Alignment:
Q  198 atcattatctttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  18279597 atcattatctttaataggtcacactatgtacctaaag 18279633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 18283560 - 18283596
Alignment:
Q  198 atcattatctttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  18283560 atcattatctttaataggtcacactatgtacctaaag 18283596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 26292589 - 26292625
Alignment:
Q  198 atcattatctttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  26292589 atcattatctttaataggtcacactatgtacctaaag 26292625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0371 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: scaffold0371
Description:

Target: scaffold0371; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 8 - 234
Target Start/End: Original strand, 15341 - 15567
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||||||||||||||| ||||||||||||||||  ||||||||| ||||||||| |||||||||||||||||| |||||||||||| ||||||||    
T  15341 catcatcaacttattcataattatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagttaaataacaaatcattctcattagtttct 15440  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaagcttaacagttcatgatcattatct 207  Q
    ||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||  || ||| ||||||| ||| |||||||||| |||||    
T  15441 tgatcatccaacaacaattcaagtaagtataattcaatccataattcacttcataatcatttagcaactcagaaagcttcacaattcatgatcagtatct 15540  T
Q  208 ttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||| ||||    
T  15541 ttaataggtcacactaagtacctaaag 15567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0546 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: scaffold0546
Description:

Target: scaffold0546; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 8 - 237
Target Start/End: Original strand, 1903 - 2132
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    |||||||||||||||||||||||||||||| |||||||  ||| ||||| ||| ||||| |||||||||||||||||| |||||| ||||||||||||||    
T  1903 catcatcaacttattcataatcatgcaactcagttaaataacatttgcagcattatcaaatcacatcaagttaaataacaaatcactctcaatagtttct 2002  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaagcttaacagttcatgatcattatct 207  Q
    |||||||| |||||||||||||||||||||||||  ||||||| |||||||||||||||||||  |||||||||||||  ||||||| ||||||||||||    
T  2003 tgatcatttaacaacaattcaagtaagtataattcaatccatagttcacttcataatcatttatcaattcataaagctccacagttcttgatcattatct 2102  T
Q  208 ttaataggtcacactaagtaccgaaagctc 237  Q
    ||||||||||||| ||| |||| |||||||    
T  2103 ttaataggtcacattaaatacctaaagctc 2132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0546; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 220
Target Start/End: Complemental strand, 6359 - 6147
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||||||||||||  ||||||||| ||||| ||  ||||||||| ||||||||| |||||||||||| ||||| ||||||||| ||  |  ||||    
T  6359 catcatcaacttattcatgctcatgcaacatagtttaataacaattgcagcataatcaaatcacatcaagtttaataacaaatcattcacagcaacttct 6260  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcat-aaagcttaacagttcatgatcattatc 206  Q
    |||||||||||||| ||||||||||| || || |  |||||||||||||||||||||||  ||| ||||||| ||||||| | |||||    ||| ||||    
T  6259 tgatcattcaacaataattcaagtaaatacaa-tcaatccataattcacttcataatcacataacaattcataaaagcttcagagttctcagtcaatatc 6161  T
Q  207 tttaataggtcaca 220  Q
    ||||||||||||||    
T  6160 tttaataggtcaca 6147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0109 (Bit Score: 146; Significance: 5e-77; HSPs: 4)
Name: scaffold0109
Description:

Target: scaffold0109; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 11404 - 11175
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    |||||||||||||||||||||||||||||| |||||||  ||| ||||| ||| ||||| |||||||||||||||||| |||||| ||||||||||||||    
T  11404 catcatcaacttattcataatcatgcaactcagttaaataacatttgcagcattatcaaatcacatcaagttaaataacaaatcactctcaatagtttct 11305  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaagcttaacagttcatgatcattatct 207  Q
    |||||||| |||||||||||||||||||||||||  ||||||| |||||||||||||||||||  |||||||||||||  ||||||| ||||||||||||    
T  11304 tgatcatttaacaacaattcaagtaagtataattcaatccatagttcacttcataatcatttatcaattcataaagctccacagttcttgatcattatct 11205  T
Q  208 ttaataggtcacactaagtaccgaaagctc 237  Q
    ||||||||||||| ||| |||| |||||||    
T  11204 ttaataggtcacattaaatacctaaagctc 11175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0109; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 38921 - 38692
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    |||||||||||||||||||||||||||||| |||||||  ||| ||||| ||| ||||| | |||||||||||||||| |||||| ||||||||||||||    
T  38921 catcatcaacttattcataatcatgcaactcagttaaataacatttgcagcattatcaaatgacatcaagttaaataacaaatcactctcaatagtttct 38822  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaagcttaacagttcatgatcattatct 207  Q
    |||||||| |||||||||||||||||||||||||  ||||||| |||||||||||||||||||  |||||||||||||  || |||||||||||||||||    
T  38821 tgatcatttaacaacaattcaagtaagtataattcaatccatagttcacttcataatcatttatcaattcataaagctccacggttcatgatcattatct 38722  T
Q  208 ttaataggtcacactaagtaccgaaagctc 237  Q
    ||||||||||||| |||||||| |||||||    
T  38721 ttaataggtcacattaagtacctaaagctc 38692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0109; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 220
Target Start/End: Original strand, 6948 - 7160
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||||||||||||  ||||||||| ||||| ||  ||||||||| ||||||||| |||||||||||| ||||| ||||||||| ||  |  ||||    
T  6948 catcatcaacttattcatgctcatgcaacatagtttaataacaattgcagcataatcaaatcacatcaagtttaataacaaatcattcacagcaacttct 7047  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcat-aaagcttaacagttcatgatcattatc 206  Q
    |||||||||||||| ||||||||||| || || |  |||||||||||||||||||||||  ||| ||||||| ||||||| | |||||    ||| ||||    
T  7048 tgatcattcaacaataattcaagtaaatacaa-tcaatccataattcacttcataatcacataacaattcataaaagcttcagagttctcagtcaatatc 7146  T
Q  207 tttaataggtcaca 220  Q
    ||||||||||||||    
T  7147 tttaataggtcaca 7160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0109; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 35855 - 35819
Alignment:
Q  198 atcattatctttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  35855 atcattatctttaataggtcacactatgtacctaaag 35819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 8 - 234
Target Start/End: Original strand, 16696789 - 16697022
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||| ||||| ||| ||||||||||||||| || ||| |||||||||||||||||    
T  16696789 catcatcaacttattcataatcatgcaacttagttaaataacaattgcagcataaacaaatcacatcaagttaaagaacaaaacattctcaatagtttct 16696888  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaagc-------ttaacagttcatgatc 200  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||| ||||||||||||       || ||||||||  |||    
T  16696889 tgatcattcaacaacaattcaagtaagtataattcaatccataattcacttcatgatcatttaacaattcataaagcttcacagttcacagttcacaatc 16696988  T
Q  201 attatctttaataggtcacactaagtaccgaaag 234  Q
    ||||||||||||||||||||||| ||||| ||||    
T  16696989 attatctttaataggtcacactatgtacctaaag 16697022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 10 - 179
Target Start/End: Complemental strand, 4589294 - 4589125
Alignment:
Q  10 tcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttcttg 109  Q
    ||||||||||||||||| || |||||||||||||||  ||||||||| ||||||||| |||||||||||||||||| ||||||||||| | |||||||||    
T  4589294 tcatcaacttattcatactcttgcaacttagttaaataacaattgcagcataatcaaatcacatcaagttaaataacaaatcattctcgaaagtttcttg 4589195  T
Q  110 atcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcat 179  Q
    ||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||| |||||||    
T  4589194 atcattcaacaacaattcaagtaggtataattcaatccataattcacttcataatcatttaacaattcat 4589125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 10 - 179
Target Start/End: Original strand, 19775353 - 19775522
Alignment:
Q  10 tcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttcttg 109  Q
    ||||||||||||||||| || |||||||||||||||  ||||||||| ||||||||| |||||||||||||||||| ||||||||||| | |||||||||    
T  19775353 tcatcaacttattcatactcttgcaacttagttaaataacaattgcagcataatcaaatcacatcaagttaaataacaaatcattctcgaaagtttcttg 19775452  T
Q  110 atcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcat 179  Q
    ||||||||||||||||||||||| ||||||||  |||||||||||||||| ||||||||||| |||||||    
T  19775453 atcattcaacaacaattcaagtaggtataattcaatccataattcacttcttaatcatttaacaattcat 19775522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 8 - 171
Target Start/End: Complemental strand, 16798156 - 16797994
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||||||||||||| ||||||||| ||||| ||  |||| |||||||||||||| |||||||||  | ||||| |||||||| |||| | |||||    
T  16798156 catcatcaacttattcatactcatgcaacatagtttaataacaagtgcaacataatcaaatcacatcaaacttaataacaaatcattttcaacaatttct 16798057  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaa 171  Q
    |||||||||||||| ||||||||||| || || |  ||||||||||||||| ||||||| ||||    
T  16798056 tgatcattcaacaataattcaagtaaatacaa-tcaatccataattcactttataatcacttaa 16797994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 171
Target Start/End: Complemental strand, 16808983 - 16808821
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||||||||||||| ||||||||  ||||| ||  |||| |||||||||||||| |||||||||| | ||||| ||||||||  ||| | |||||    
T  16808983 catcatcaacttattcatactcatgcaatatagtttaataacaagtgcaacataatcaaatcacatcaagcttaataacaaatcatttgcaacaatttct 16808884  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaa 171  Q
    ||| |||||||||| ||||||||||| || || |  ||||||||||||||| ||||||| ||||    
T  16808883 tgaccattcaacaataattcaagtaaatacaa-tcaatccataattcactttataatcacttaa 16808821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 38814388 - 38814513
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    |||||||| |||||| |||  |||||||||||||||||  ||| ||||| ||||||||| ||||| || ||| ||||| ||||||||||||| | |||||    
T  38814388 catcatcagcttattgatagacatgcaacttagttaaataacatttgcagcataatcaaatcacaacaggtttaataacaaatcattctcaacaatttct 38814487  T
Q  108 tgatcattcaacaacaattcaagtaa 133  Q
    |||||||||||||| |||||||||||    
T  38814488 tgatcattcaacaataattcaagtaa 38814513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 3833678 - 3833803
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    |||||||| ||||||||||  |||||||||||||||||  ||| ||||| ||||||||| ||||| || ||| ||||| || |||||||||| | || ||    
T  3833678 catcatcagcttattcatagacatgcaacttagttaaataacatttgcagcataatcaaatcacaacaggtttaataacaagtcattctcaacaattgct 3833777  T
Q  108 tgatcattcaacaacaattcaagtaa 133  Q
    |||||||||||||| |||||||||||    
T  3833778 tgatcattcaacaataattcaagtaa 3833803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 12339470 - 12339556
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcatt 94  Q
    ||||||||||||||||||| ||||||||||||||||||  ||||||||| |||||||||||| ||||||||| ||||| || |||||    
T  12339470 catcatcaacttattcatactcatgcaacttagttaaataacaattgcagcataatcaattctcatcaagtttaataacaattcatt 12339556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 223
Target Start/End: Original strand, 17241978 - 17242191
Alignment:
Q  10 tcatcaacttatt-cataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttctt 108  Q
    ||||||||||||| || | ||||||||| ||||| ||  ||||||||| ||||||||| |||| ||||| | ||||| ||||||||||||| |  |||||    
T  17241978 tcatcaacttatttcagactcatgcaacatagtttaataacaattgcagcataatcaaatcacgtcaagcttaataacaaatcattctcaaca-attctt 17242076  T
Q  109 gatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaa-gcttaacagttcatgatcattatct 207  Q
    ||||| ||||||| ||||||||||||   || |  ||||||||||||||||||||||| |||| |  ||||||| |||| |||||||    ||| |||||    
T  17242077 gatcaatcaacaataattcaagtaagggcaa-tcaatccataattcacttcataatcacttaatatatcataaaggcttcacagttctcagtcaatatct 17242175  T
Q  208 ttaataggtcacacta 223  Q
     ||||||||| |||||    
T  17242176 ctaataggtctcacta 17242191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 8489573 - 8489487
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcatt 94  Q
    ||||||||||||||||||| ||||||||||||||||||  ||||||||| ||||||||| |||||||||| | ||||| || |||||    
T  8489573 catcatcaacttattcatactcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagcttaataacaattcatt 8489487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 15464869 - 15464955
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcatt 94  Q
    ||||||||||||||||||| ||||||||||||||||||  ||||||||| ||||||||| |||||||||| | ||||| || |||||    
T  15464869 catcatcaacttattcatactcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagcttaataacaattcatt 15464955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 10 - 131
Target Start/End: Complemental strand, 15850183 - 15850063
Alignment:
Q  10 tcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttcttg 109  Q
    |||||||||||||||   ||||||||||||||||||  ||||||||| ||||||||  ||| |||||||| ||||| || ||||| || | | |||||||    
T  15850183 tcatcaacttattcagtctcatgcaacttagttaaataacaattgcagcataatcagatcatatcaagtttaataacaattcattttc-acaatttcttg 15850085  T
Q  110 atcattcaacaacaattcaagt 131  Q
    |||||||||||| |||||||||    
T  15850084 atcattcaacaataattcaagt 15850063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 5223068 - 5223154
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcatt 94  Q
    ||||||||||||||||||| |||| |||||||||||||  ||||||||| ||||||||| |||||||||| | ||||| || |||||    
T  5223068 catcatcaacttattcatactcatacaacttagttaaataacaattgcagcataatcaaatcacatcaagcttaataacaattcatt 5223154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 133
Target Start/End: Complemental strand, 16750689 - 16750570
Alignment:
Q  10 tcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttcttg 109  Q
    ||||||||||||||||| || |||||||||||||||  ||||||||| ||||||||||||| |||||| | ||||| || ||||| |||| |   |||||    
T  16750689 tcatcaacttattcatattcttgcaacttagttaaataacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttg 16750594  T
Q  110 atcattcaacaacaattcaagtaa 133  Q
    ||||||||| || | |||||||||    
T  16750593 atcattcaataatatttcaagtaa 16750570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 132
Target Start/End: Complemental strand, 31097656 - 31097532
Alignment:
Q  10 tcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatca--agttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||||||||| | ||||||||| |||||||   ||||||||| ||||||||  ||||||||  || | ||||| || ||||| |||| | |||||    
T  31097656 tcatcaacttattcagactcatgcaacatagttaattaacaattgcagcataatcagatcacatcaatagcttaataacaattcattttcaacaatttct 31097557  T
Q  108 tgatcattcaacaacaattcaagta 132  Q
    |||||||||||||| ||||||||||    
T  31097556 tgatcattcaacaataattcaagta 31097532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 11854422 - 11854507
Alignment:
Q  9 atcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcatt 94  Q
    |||| ||||||||||||| ||||||||||||||||||  ||||||||  ||||||||| |||||||||| | ||||| || |||||    
T  11854422 atcaacaacttattcatactcatgcaacttagttaaataacaattgcggcataatcaaatcacatcaagcttaataacaattcatt 11854507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 1598581 - 1598490
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaag-ttaaataaaaaatcattctcaa 99  Q
    |||||||| ||||| ||||  |||||||||||||||||  || |||||| ||||||||| |||||||||| |||||||| |||||||| ||||    
T  1598581 catcatcagcttatacatagacatgcaacttagttaaataac-attgcagcataatcaaatcacatcaagcttaaataacaaatcattttcaa 1598490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 15482666 - 15482793
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaa--gttaaataaaaaatcattctcaatagttt 105  Q
    ||||||||||||||||| | |||||||||||||||||   ||||| ||| ||||||||  |||||||||  | | ||||  || ||||| |||| | |||    
T  15482666 catcatcaacttattcagactcatgcaacttagttaattaacaatagcagcataatcagatcacatcaacagcttaatatcaattcattttcaacaattt 15482765  T
Q  106 cttgatcattcaacaacaattcaagtaa 133  Q
    ||||| ||||||| || |||||||||||    
T  15482766 cttgagcattcaataataattcaagtaa 15482793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 4111332 - 4111231
Alignment:
Q  28 tcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttcttgatcattcaacaacaattc 127  Q
    ||||||||||||||| ||| ||||||||| ||||||||||||| |||||| | ||||| || ||||| |||| |   |||||||||||||| || | |||    
T  4111332 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttgatcattcaataatatttc 4111237  T
Q  128 aagtaa 133  Q
    ||||||    
T  4111236 aagtaa 4111231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 15942006 - 15941915
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaa 99  Q
    |||||||| ||||| | ||  |||||||||||||||||  ||| ||||| ||||||||| ||||||||| || ||||| |||||||| ||||    
T  15942006 catcatcagcttatacttagacatgcaacttagttaaataacatttgcagcataatcaaatcacatcaaatttaataacaaatcattttcaa 15941915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 15964995 - 15965096
Alignment:
Q  28 tcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttcttgatcattcaacaacaattc 127  Q
    ||||||||||||||| ||| ||||||||| ||||||||||||| |||||| | ||||| || ||||| |||| |   |||||||||||||| || | |||    
T  15964995 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttgatcattcaataatatttc 15965090  T
Q  128 aagtaa 133  Q
    ||||||    
T  15965091 aagtaa 15965096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 15968919 - 15969020
Alignment:
Q  28 tcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttcttgatcattcaacaacaattc 127  Q
    ||||||||||||||| ||| ||||||||| ||||||||||||| |||||| | ||||| || ||||| |||| |   |||||||||||||| || | |||    
T  15968919 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttgatcattcaataatatttc 15969014  T
Q  128 aagtaa 133  Q
    ||||||    
T  15969015 aagtaa 15969020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 15972843 - 15972944
Alignment:
Q  28 tcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttcttgatcattcaacaacaattc 127  Q
    ||||||||||||||| ||| ||||||||| ||||||||||||| |||||| | ||||| || ||||| |||| |   |||||||||||||| || | |||    
T  15972843 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttgatcattcaataatatttc 15972938  T
Q  128 aagtaa 133  Q
    ||||||    
T  15972939 aagtaa 15972944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 19775791 - 19775892
Alignment:
Q  28 tcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttcttgatcattcaacaacaattc 127  Q
    ||||||||||||||| ||| ||||||||| ||||||||||||| |||||| | ||||| || ||||| |||| |   |||||||||||||| || | |||    
T  19775791 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttgatcattcaataatatttc 19775886  T
Q  128 aagtaa 133  Q
    ||||||    
T  19775887 aagtaa 19775892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 94
Target Start/End: Complemental strand, 4107480 - 4107414
Alignment:
Q  28 tcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcatt 94  Q
    ||||||||||||||| ||| ||||||||| ||||||||||||| |||||| | ||||| || |||||    
T  4107480 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt 4107414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 220
Target Start/End: Complemental strand, 16865100 - 16865023
Alignment:
Q  144 atccataattcacttcataatcatttaaaaattcataaag-cttaacagttcatgatcattatctttaataggtcaca 220  Q
    |||||||| ||| |||||||||  |||| ||||||||||  ||| ||||||||| |||||||||||| ||||||||||    
T  16865100 atccataaatcatttcataatctcttaacaattcataaaatcttcacagttcataatcattatctttgataggtcaca 16865023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 11300868 - 11300781
Alignment:
Q  8 catcatcaacttatt-cataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcatt 94  Q
    ||||||||||||||| || | ||||||||||||||||||  ||||||| | ||||||||| |||||| | ||| ||||| || |||||    
T  11300868 catcatcaacttatttcagactcatgcaacttagttaaataacaattgtagcataatcaaatcacataacgtttaataacaattcatt 11300781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 37439719 - 37439618
Alignment:
Q  28 tcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttcttgatcattcaacaacaattc 127  Q
    ||||||||||||||| ||| ||||||| | ||||||||||||| |||||| | ||||| || ||||| |||| |   |||||||||||||| || | |||    
T  37439719 tcatgcaacttagtttaacaacaattgtagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttgatcattcaataatatttc 37439624  T
Q  128 aagtaa 133  Q
    ||||||    
T  37439623 aagtaa 37439618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 7109895 - 7109931
Alignment:
Q  198 atcattatctttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  7109895 atcattatctttaataggtcacactatgtacctaaag 7109931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 7113830 - 7113866
Alignment:
Q  198 atcattatctttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  7113830 atcattatctttaataggtcacactatgtacctaaag 7113866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 14665427 - 14665475
Alignment:
Q  28 tcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaa 76  Q
    ||||||||||||||||||  ||||| ||||||||||||  |||||||||    
T  14665427 tcatgcaacttagttaaataacaatagcaacataatcagatcacatcaa 14665475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 15617571 - 15617607
Alignment:
Q  198 atcattatctttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  15617571 atcattatctttaataggtcacactatgtacctaaag 15617607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 22321861 - 22321897
Alignment:
Q  198 atcattatctttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  22321861 atcattatctttaataggtcacactatgtacctaaag 22321897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 22336916 - 22336952
Alignment:
Q  198 atcattatctttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  22336916 atcattatctttaataggtcacactatgtacctaaag 22336952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 27409556 - 27409520
Alignment:
Q  198 atcattatctttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  27409556 atcattatctttaataggtcacactatgtacctaaag 27409520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 28949921 - 28949957
Alignment:
Q  198 atcattatctttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  28949921 atcattatctttaataggtcacactatgtacctaaag 28949957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0130 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: scaffold0130
Description:

Target: scaffold0130; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 8 - 186
Target Start/End: Complemental strand, 6102 - 5924
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||||||||||||| ||||||||||||||| ||  ||||||||| ||||||||| |||||||| ||||||||| |||||||||||||||||||||    
T  6102 catcatcaacttattcatactcatgcaacttagtttaataacaattgcagcataatcaaatcacatcaggttaaataacaaatcattctcaatagtttct 6003  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaagctt 186  Q
    |||||||||||||| |||||||||||||||| ||  ||||||||||||||| |||||||||||| ||||||||||||||    
T  6002 tgatcattcaacaataattcaagtaagtatatttcaatccataattcacttaataatcatttaacaattcataaagctt 5924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 114; Significance: 6e-58; HSPs: 3)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 10 - 179
Target Start/End: Original strand, 80300 - 80469
Alignment:
Q  10 tcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttcttg 109  Q
    ||||||||||||||||| || |||||||||||||||  ||||||||| ||||||||| |||||||||||||||||| ||||||||||| | |||||||||    
T  80300 tcatcaacttattcatactcttgcaacttagttaaataacaattgcagcataatcaaatcacatcaagttaaataacaaatcattctcgaaagtttcttg 80399  T
Q  110 atcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcat 179  Q
    ||||||||||||||||||||||| ||||||||  |||||||||||||||| ||||||||||| |||||||    
T  80400 atcattcaacaacaattcaagtaggtataattcaatccataattcacttcttaatcatttaacaattcat 80469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 80738 - 80842
Alignment:
Q  28 tcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttcttgatcattcaacaacaattc 127  Q
    ||||||||||||||| ||  ||||||||| ||||||||||||| |||||| | ||||| || ||||| |||| |  ||| ||||||||||| || |||||    
T  80738 tcatgcaacttagtttaataacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaacatcttcctgatcattcaataataattc 80836  T
Q  128 aagtaa 133  Q
    ||||||    
T  80837 aagtaa 80842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 65440 - 65404
Alignment:
Q  198 atcattatctttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  65440 atcattatctttaataggtcacactatgtacctaaag 65404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 1e-55; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 10 - 179
Target Start/End: Complemental strand, 20229330 - 20229161
Alignment:
Q  10 tcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttcttg 109  Q
    ||||||||||||||||| || |||||||||||||||  |||||| || ||||||||| |||||| ||||||||||| ||||||||||||| |||||||||    
T  20229330 tcatcaacttattcatactcttgcaacttagttaaataacaattccagcataatcaaatcacattaagttaaataacaaatcattctcaaaagtttcttg 20229231  T
Q  110 atcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcat 179  Q
    ||||||||||||||||||||||| ||||||||  |||||||||||||||| ||||||||||| |||||||    
T  20229230 atcattcaacaacaattcaagtaggtataattcaatccataattcacttcttaatcatttaacaattcat 20229161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 194
Target Start/End: Original strand, 19211870 - 19212057
Alignment:
Q  8 catcatcaactta-ttcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttc 106  Q
    ||||||||||||| |||| | ||||||||||||||||||  ||||||||| ||||||||| |||| ||||| | ||||| || |||||||||| | ||||    
T  19211870 catcatcaacttaattcagactcatgcaacttagttaaataacaattgcagcataatcaaatcacgtcaagcttaataacaattcattctcaacaatttc 19211969  T
Q  107 ttgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcat-aaagcttaacagttc 194  Q
    ||||||||||||||| ||||||||||| || || |  ||||||||||||||| ||||||| |||| | ||||| ||||||| |||||||    
T  19211970 ttgatcattcaacaataattcaagtaaatacaa-tcaatccataattcactttataatcacttaacatttcataaaagcttcacagttc 19212057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 20138086 - 20138209
Alignment:
Q  8 catcatcaactta-ttcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttc 106  Q
    ||||||||||||| |||| | ||||||||||||||||||  ||||||||| ||||||||| |||||||| ||| ||||| ||||||||||||| | ||||    
T  20138086 catcatcaacttaattcagactcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaggtttaataacaaatcattctcaacaatttc 20138185  T
Q  107 ttgatcattcaacaacaattcaag 130  Q
    |||| |||||||||| ||||||||    
T  20138186 ttgaacattcaacaataattcaag 20138209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 18882371 - 18882496
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    |||||||| |||||||||||  ||||||||||||||||  ||| || || ||||||||| |||||||||| | ||||| |||||||| |||| | |||||    
T  18882371 catcatcagcttattcataaaaatgcaacttagttaaataacattttcagcataatcaaatcacatcaagcttaataacaaatcattatcaacaatttct 18882470  T
Q  108 tgatcattcaacaacaattcaagtaa 133  Q
    |||||||||||||| |||||||||||    
T  18882471 tgatcattcaacaataattcaagtaa 18882496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 46975471 - 46975596
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    |||||||| ||||||||||  | |||||||||||||||  ||| ||||| ||||||||| ||||| || ||| ||||| ||||||||||||| | |||||    
T  46975471 catcatcagcttattcatagacgtgcaacttagttaaataacatttgcagcataatcaaatcacaacaggtttaataacaaatcattctcaacaatttct 46975570  T
Q  108 tgatcattcaacaacaattcaagtaa 133  Q
    |||||||||||||| |||||||||||    
T  46975571 tgatcattcaacaataattcaagtaa 46975596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 171
Target Start/End: Original strand, 12646876 - 12647036
Alignment:
Q  10 tcatcaacttatt-cataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttctt 108  Q
    ||||||||||||| || | ||||||||| ||||| ||  ||||||||| ||||||||| |||| ||||| | ||||| ||||||||||||| |  |||||    
T  12646876 tcatcaacttatttcagattcatgcaacatagtttaataacaattgcagcataatcaaatcacgtcaagcttaataacaaatcattctcaaca-attctt 12646974  T
Q  109 gatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaa 171  Q
    ||||| ||||||| ||||||||||||   || |  ||||||||||||||||||||||| ||||    
T  12646975 gatcaatcaacaataattcaagtaagggcaa-tcaatccataattcacttcataatcacttaa 12647036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 33797286 - 33797372
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcatt 94  Q
    ||||||||||||||||||| ||||||||||||||||||  ||||||||| ||||||||| |||||||||| | ||||| || |||||    
T  33797286 catcatcaacttattcatactcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagcttaataacaattcatt 33797372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 133
Target Start/End: Complemental strand, 41388342 - 41388223
Alignment:
Q  10 tcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttcttg 109  Q
    ||||||||||||||||| || |||||||||||||||  ||||||||| ||||||||||||  |||||| | |||||||| ||||| |||| |   |||||    
T  41388342 tcatcaacttattcatattcttgcaacttagttaaataacaattgcagcataatcaattcgtatcaagcttaataaaaattcatt-tcaaca---tcttg 41388247  T
Q  110 atcattcaacaacaattcaagtaa 133  Q
    ||||||||| || | |||||||||    
T  41388246 atcattcaataatatttcaagtaa 41388223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 39244242 - 39244176
Alignment:
Q  10 tcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaa 76  Q
    ||||||||||||||||| || |||||||||||||||  ||||||||| ||||||||||||| |||||    
T  39244242 tcatcaacttattcatattcttgcaacttagttaaataacaattgcagcataatcaattcatatcaa 39244176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 39247797 - 39247731
Alignment:
Q  10 tcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaa 76  Q
    ||||||||||||||||| || |||||||||||||||  ||||||||| ||||||||||||| |||||    
T  39247797 tcatcaacttattcatattcttgcaacttagttaaataacaattgcagcataatcaattcatatcaa 39247731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 23819381 - 23819276
Alignment:
Q  28 tcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttcttgatcattcaacaacaattc 127  Q
    ||||||||||| ||| ||  ||||||||| ||||||||||||| |||||| | ||||| || ||||| |||  | |||||||||||||||| || |||||    
T  23819381 tcatgcaacttcgtttaataacaattgcagcataatcaattcatatcaagcttaataacaattcattttcagcaatttcttgatcattcaataataattc 23819282  T
Q  128 aagtaa 133  Q
    ||||||    
T  23819281 aagtaa 23819276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 1925212 - 1925111
Alignment:
Q  28 tcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttcttgatcattcaacaacaattc 127  Q
    ||||||||||||||| ||| ||||||||| ||||||||||||| |||||| | ||||| || ||||| |||| |   |||||||||||||| || | |||    
T  1925212 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttgatcattcaataatatttc 1925117  T
Q  128 aagtaa 133  Q
    ||||||    
T  1925116 aagtaa 1925111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 20924226 - 20924125
Alignment:
Q  28 tcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttcttgatcattcaacaacaattc 127  Q
    ||||||||||||||| ||| ||||||||| ||||||||||||| |||||| | ||||| || ||||| |||| |   |||||||||||||| || | |||    
T  20924226 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttgatcattcaataatatttc 20924131  T
Q  128 aagtaa 133  Q
    ||||||    
T  20924130 aagtaa 20924125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 202 - 237
Target Start/End: Original strand, 21615635 - 21615670
Alignment:
Q  202 ttatctttaataggtcacactaagtaccgaaagctc 237  Q
    |||||||||||||||||||||||||||| |||||||    
T  21615635 ttatctttaataggtcacactaagtacctaaagctc 21615670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 36819412 - 36819345
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatca 75  Q
    ||||||||||||||||| | |||||||||||||||||   ||||| ||| ||||||||  ||||||||    
T  36819412 catcatcaacttattcagactcatgcaacttagttaattaacaatagcagcataatcagatcacatca 36819345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 16375370 - 16375334
Alignment:
Q  198 atcattatctttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  16375370 atcattatctttaataggtcacactatgtacctaaag 16375334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 20228721 - 20228685
Alignment:
Q  198 atcattatctttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  20228721 atcattatctttaataggtcacactatgtacctaaag 20228685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 21407549 - 21407585
Alignment:
Q  198 atcattatctttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  21407549 atcattatctttaataggtcacactatgtacctaaag 21407585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 52639735 - 52639771
Alignment:
Q  198 atcattatctttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  52639735 atcattatctttaataggtcacactatgtacctaaag 52639771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 10 - 179
Target Start/End: Complemental strand, 80876 - 80706
Alignment:
Q  10 tcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttcttg 109  Q
    ||||||||||||||||| || |||||||||||||||  ||||||||| |||||| || |||||||||||||||||| ||||||||||| | |||||||||    
T  80876 tcatcaacttattcatactcttgcaacttagttaaataacaattgcagcataattaaatcacatcaagttaaataacaaatcattctcgaaagtttcttg 80777  T
Q  110 atcattcaacaacaattcaagtaagtataatttcatccataa-ttcacttcataatcatttaaaaattcat 179  Q
    ||||||||||||||||||||||| ||||||||  |||||||| |||||||||||||||||||| |||||||    
T  80776 atcattcaacaacaattcaagtaggtataattcaatccataatttcacttcataatcatttaacaattcat 80706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1552 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold1552
Description:

Target: scaffold1552; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 8 - 216
Target Start/End: Original strand, 372 - 565
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    |||||||||||||||||||||||||||||||| |||||  ||||||||| ||||||||| |||||||| |||||| || ||||||||||||||| |||||    
T  372 catcatcaacttattcataatcatgcaacttaattaaataacaattgcagcataatcaaatcacatcaggttaaacaacaaatcattctcaataatttct 471  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaagcttaacagttcatgatcattatct 207  Q
    | |||||||||||| ||||||               ||||||||||||||||||||||| |||| |||||||||||||| |||||||    ||| |||||    
T  472 taatcattcaacaataattca---------------atccataattcacttcataatcacttaacaattcataaagcttcacagttctcagtcaatatct 556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 8 - 220
Target Start/End: Original strand, 9907 - 10119
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    |||||||| ||||||||||  |||||||||||||||||  ||| ||||| ||||||||| |||||||| ||| ||||| ||||||||||||| | |||||    
T  9907 catcatcagcttattcatacacatgcaacttagttaaataacatttgcagcataatcaaatcacatcaggtttaataacaaatcattctcaacaatttct 10006  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcat-aaagcttaacagttcatgatcattatc 206  Q
    |||||||||||||| |||||||||||    || |  ||||||| |||| |||||||||  |||| | ||||| ||| ||| ||||||||   ||||||||    
T  10007 tgatcattcaacaataattcaagtaaaggcaa-tcaatccatatttcatttcataatctcttaacagttcataaaaacttcacagttcacagtcattatc 10105  T
Q  207 tttaataggtcaca 220  Q
    ||||||||||||||    
T  10106 tttaataggtcaca 10119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 220
Target Start/End: Original strand, 63858 - 64069
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    |||||||| ||||||||||| |||||||||||||||||  ||| ||||| ||||||||| ||||| || ||| ||||| || |||||||||| | |||||    
T  63858 catcatcagcttattcataa-catgcaacttagttaaataacatttgcagcataatcaaatcacaacaggtttaataacaattcattctcaacaatttct 63956  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcat-aaagcttaacagttcatgatcattatc 206  Q
    |||||||||||||| |||||||||||    || |  ||||||| |||| |||||||||  |||| | ||||| ||| ||| |||||||||  ||||||||    
T  63957 tgatcattcaacaataattcaagtaaaggcaa-tcaatccatatttcatttcataatctcttaacagttcataaaaacttcacagttcatagtcattatc 64055  T
Q  207 tttaataggtcaca 220  Q
    ||||||||||||||    
T  64056 tttaataggtcaca 64069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 233
Target Start/End: Original strand, 75742 - 75965
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    |||||||| ||||||||||| |||||||||||||||||  ||| || || ||||||||| ||||| || ||| ||||| || |||||||||| | |||||    
T  75742 catcatcagcttattcataa-catgcaacttagttaaataacattttcagcataatcaaatcacaacaggtttaataacaattcattctcaacaatttct 75840  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcat-aaagcttaacagttcatgatcattatc 206  Q
    ||| |||||||||| |||||||||||    ||| | ||||||| |||| |||||||||  |||| | ||||| ||| ||| ||||||||   ||||||||    
T  75841 tgaccattcaacaataattcaagtaaaggcaatct-atccatatttcatttcataatctcttaacagttcataaaaacttcacagttcacagtcattatc 75939  T
Q  207 tttaataggtcacactaagtaccgaaa 233  Q
    ||||||| |||||| | ||||||||||    
T  75940 tttaatatgtcaca-ttagtaccgaaa 75965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 220
Target Start/End: Original strand, 18358 - 18570
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    |||||||| ||||||||||  |||||||||||||||||  ||| ||||| ||||| ||| |||||||| ||| ||||| ||||||||||||| | |||||    
T  18358 catcatcagcttattcatacacatgcaacttagttaaataacatttgcagcataaacaaatcacatcaggtttaataacaaatcattctcaacaatttct 18457  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttca-tccataattcacttcataatcatttaaaaattcat-aaagcttaacagttcatgatcattat 205  Q
    |||||||||||||| |||||||||||    ||  ||| ||||||||||| || ||||||  |||| ||||||| ||| ||| | ||||||   |||||||    
T  18458 tgatcattcaacaataattcaagtaaaggcaa--tcagtccataattcatttaataatctcttaacaattcataaaaacttcatagttcacagtcattat 18555  T
Q  206 ctttaataggtcaca 220  Q
    |||||||||||||||    
T  18556 ctttaataggtcaca 18570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 8 - 133
Target Start/End: Complemental strand, 20119 - 19994
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||||||||||| | ||||||||||||||| ||  ||||||||||||||||||  |||||||||| | ||||| || ||||| |||| | |||||    
T  20119 catcatcaacttattcagattcatgcaacttagtttaataacaattgcaacataatcagatcacatcaagcttaataacaattcattttcaacaatttct 20020  T
Q  108 tgatcattcaacaacaattcaagtaa 133  Q
    ||||||||||| || |||||||||||    
T  20019 tgatcattcaataataattcaagtaa 19994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 173295 - 173420
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||||||||||| | ||||||||||||||||||  ||||||||| ||||||||| |||||||||| | ||||| || ||||| |||| | |||||    
T  173295 catcatcaacttattcagactcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagcttaataacaattcattttcaacaatttct 173394  T
Q  108 tgatcattcaacaacaattcaagtaa 133  Q
    | ||||||||| || |||||||||||    
T  173395 ttatcattcaataataattcaagtaa 173420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 50 - 182
Target Start/End: Original strand, 23262 - 23393
Alignment:
Q  50 aattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttcttgatcattcaacaacaattcaagtaagtataatttcatccat 149  Q
    ||||||| | ||||||| |||||||||| | ||||| ||||||||||||| | ||||||| ||||||||||| ||||||||||| || || |  ||||||    
T  23262 aattgcagcttaatcaaatcacatcaagcttaataacaaatcattctcaacaatttcttggtcattcaacaataattcaagtaaatacaa-tcaatccat 23360  T
Q  150 aattcacttcataatcatttaaaaattcataaa 182  Q
    ||||||||||||||||| |||| ||||||||||    
T  23361 aattcacttcataatcacttaacaattcataaa 23393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 133
Target Start/End: Complemental strand, 3633 - 3507
Alignment:
Q  8 catcatcaactta-ttcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttc 106  Q
    ||||||||||||| |||| | ||||||||||||||||||  |||||||||  |||||||| |||||||||| | ||||| || ||||| |||| | ||||    
T  3633 catcatcaacttaattcagactcatgcaacttagttaaataacaattgcagtataatcaaatcacatcaagcttaataacaattcattttcaacaatttc 3534  T
Q  107 ttgatcattcaacaacaattcaagtaa 133  Q
    |||||||||||| ||||||||||||||    
T  3533 ttgatcattcaataacaattcaagtaa 3507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 217
Target Start/End: Complemental strand, 18461 - 18253
Alignment:
Q  10 tcatcaactta-ttcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttctt 108  Q
    ||||||||||| |||| | ||||||||||||||||||  ||||||||| ||||||||| |||||||||| | ||||| || ||||| |||| | || |||    
T  18461 tcatcaacttaattcagactcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagcttaataacaattcattttcaacaattcctt 18362  T
Q  109 gatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcat-aaagcttaacagttcatgatcattatct 207  Q
    |||||||||| || ||||||||||| || || |  ||||||||||||||| ||  ||| |||| |  |||| ||||||| |||||||    |||||||||    
T  18361 gatcattcaataataattcaagtaaatacaa-tcaatccataattcactttattttcacttaacatatcataaaagcttcacagttctcagtcattatct 18263  T
Q  208 ttaataggtc 217  Q
    ||||||||||    
T  18262 ttaataggtc 18253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 133
Target Start/End: Complemental strand, 228475 - 228350
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||||||||||| | ||||||||||||||||||  ||||||||| ||||||||  |||||||||| | ||||| || ||||| ||||   |||||    
T  228475 catcatcaacttattcagactcatgcaacttagttaaataacaattgcagcataatcagatcacatcaagcttaataacaattcattttcaactatttct 228376  T
Q  108 tgatcattcaacaacaattcaagtaa 133  Q
    ||||||||||| || |||||||||||    
T  228375 tgatcattcaataataattcaagtaa 228350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 9424 - 9549
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    |||||||| ||||||||||| |||||||||||||||||  ||| |||||  ||||| || ||| | || ||| ||||| ||||||||||||| | |||||    
T  9424 catcatcagcttattcataaacatgcaacttagttaaataacatttgcagtataattaaatcataacaggtttaataacaaatcattctcaacaatttct 9523  T
Q  108 tgatcattcaacaacaattcaagtaa 133  Q
    ||||||||||| || |||||||||||    
T  9524 tgatcattcaataataattcaagtaa 9549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0293 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0293
Description:

Target: scaffold0293; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 20566 - 20480
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcatt 94  Q
    ||||||||||||||||||| ||||||||||||||||||  ||||||||| ||||||||| |||||||||| | ||||| || |||||    
T  20566 catcatcaacttattcatattcatgcaacttagttaaataacaattgcagcataatcaaatcacatcaagcttaataacaattcatt 20480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 133
Target Start/End: Complemental strand, 2775 - 2649
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatca--agttaaataaaaaatcattctcaatagttt 105  Q
    ||||||||||||||||| | |||||||||||||||||   ||||||||| ||||||||  ||||||||  || | ||||| || ||||| |||| | |||    
T  2775 catcatcaacttattcagactcatgcaacttagttaattaacaattgcagcataatcagatcacatcaacagcttaataacaattcatt-tcaacaattt 2677  T
Q  106 cttgatcattcaacaacaattcaagtaa 133  Q
    ||||||||||||| ||||||||||||||    
T  2676 cttgatcattcaataacaattcaagtaa 2649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0228
Description:

Target: scaffold0228; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 8 - 133
Target Start/End: Complemental strand, 18735 - 18608
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatca--agttaaataaaaaatcattctcaatagttt 105  Q
    ||||||||||||||||| | ||||||||||||| ||||  ||||| ||| ||||||||  ||| ||||  || | ||||| || ||||| |||||| |||    
T  18735 catcatcaacttattcagactcatgcaacttaggtaaataacaatagcagcataatcagatcatatcaacagcttaataacaattcattttcaataattt 18636  T
Q  106 cttgatcattcaacaacaattcaagtaa 133  Q
    ||||||||||||| || |||||||||||    
T  18635 cttgatcattcaaaaataattcaagtaa 18608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 8 - 223
Target Start/End: Original strand, 36310 - 36524
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||  |||||||||| ||||||||||| |||||  ||| ||||| ||||||||| |||||||||| | ||||| |||||||||| || |  ||||    
T  36310 catcatcagtttattcataaacatgcaacttaattaaataacatttgcagcataatcaaatcacatcaagcttaataacaaatcattcttaaca-attct 36408  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcat-aaagcttaacagttcatgatcattatc 206  Q
    |||||| | ||||||||||   |||| |   | |  ||||||| ||||||||||||||| |||| || |||| ||||||| |||||||    ||||||||    
T  36409 tgatcaattaacaacaatttgggtaa-tggcaatcaatccatatttcacttcataatcacttaacaaatcataaaagcttcacagttctcagtcattatc 36507  T
Q  207 tttaataggtcacacta 223  Q
    | ||||||||| |||||    
T  36508 tctaataggtctcacta 36524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 8 - 217
Target Start/End: Complemental strand, 25072 - 24861
Alignment:
Q  8 catcatcaactta-ttcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttc 106  Q
    ||||||||||||| |||| | |||||||||| |||| ||  ||||||||| ||||||||| |||||||||| | ||||| ||  |||| |||||| || |    
T  25072 catcatcaacttaattcagactcatgcaactcagtttaataacaattgcagcataatcaaatcacatcaagcttaataacaacacattttcaataattcc 24973  T
Q  107 tt-gatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcat-aaagcttaacagttcatgatcatta 204  Q
    || |||||||||| || ||||||||||| |  || |  ||||||||||||||| ||||||| |||| | ||| | ||||||| |||||||    ||| ||    
T  24972 tttgatcattcaataataattcaagtaaatgcaa-tcaatccataattcactttataatcacttaacatttcctaaaagcttcacagttctcagtcaata 24874  T
Q  205 tctttaataggtc 217  Q
    |||||||||||||    
T  24873 tctttaataggtc 24861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 189460 - 189359
Alignment:
Q  28 tcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttcttgatcattcaacaacaattc 127  Q
    ||||||||||||||| ||| ||||||||| ||||||||||||| |||||| | ||||| || ||||| |||| |   |||||||||||||| || | |||    
T  189460 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttgatcattcaataatatttc 189365  T
Q  128 aagtaa 133  Q
    ||||||    
T  189364 aagtaa 189359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 8 - 223
Target Start/End: Original strand, 139715 - 139929
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttct 107  Q
    ||||||||  |||||||||| |||||||||||||||||  ||| ||||| ||||||||| |||||||||| | || || ||||||||||||| |  ||||    
T  139715 catcatcagtttattcataaacatgcaacttagttaaataacatttgcagcataatcaaatcacatcaagcttaacaacaaatcattctcaaca-attct 139813  T
Q  108 tgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcataaag-cttaacagttcatgatcattatc 206  Q
    |||||| | | ||| ||||| |||||    |||  | |||||| |||| |||||||||  |||| ||||||||||| ||| |||||||    ||||||||    
T  139814 tgatcaataatcaataattcgagtaaaggcaatcac-tccatatttcatttcataatctcttaacaattcataaagccttcacagttctcagtcattatc 139912  T
Q  207 tttaataggtcacacta 223  Q
    | ||||||||| |||||    
T  139913 tctaataggtctcacta 139929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 71072 - 71131
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaat 67  Q
    |||||||||| |||||||| ||||||||||||||||||  ||||||||| ||||||||||    
T  71072 catcatcaacatattcatactcatgcaacttagttaaataacaattgcagcataatcaat 71131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 6684 - 6770
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcatt 94  Q
    |||||| |||||||||||| ||||||||||||||||||  ||||||||| ||||||||| || ||||||| | ||||| || |||||    
T  6684 catcatgaacttattcatactcatgcaacttagttaaataacaattgcagcataatcaaatctcatcaagcttaataacaattcatt 6770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 207951 - 207894
Alignment:
Q  8 catcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatca 65  Q
    ||||||||||||||||||| ||||||||||||||||||  ||||||||| ||||||||    
T  207951 catcatcaacttattcatattcatgcaacttagttaaataacaattgcagcataatca 207894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 94
Target Start/End: Original strand, 30890 - 30974
Alignment:
Q  10 tcatcaacttattcataatcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcatt 94  Q
    ||||||||||||||||| ||||||||||||||||||  |||||| || ||||||||| || ||||||| | ||||| || |||||    
T  30890 tcatcaacttattcatactcatgcaacttagttaaataacaattacagcataatcaaatctcatcaagcttaataacaattcatt 30974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 11584 - 11483
Alignment:
Q  28 tcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttcttgatcattcaacaacaattc 127  Q
    ||||||||||||||| ||| ||||||||| ||||||||||||| |||||| | ||||| || ||||| |||| |   |||||||||||||| || | |||    
T  11584 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttgatcattcaataatatttc 11489  T
Q  128 aagtaa 133  Q
    ||||||    
T  11488 aagtaa 11483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 14170 - 14069
Alignment:
Q  28 tcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttcttgatcattcaacaacaattc 127  Q
    ||||||||||||||| ||| ||||||||| ||||||||||||| |||||| | ||||| || ||||| |||| |   |||||||||||||| || | |||    
T  14170 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttgatcattcaataatatttc 14075  T
Q  128 aagtaa 133  Q
    ||||||    
T  14074 aagtaa 14069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 36169 - 36068
Alignment:
Q  28 tcatgcaacttagttaaaccacaattgcaacataatcaattcacatcaagttaaataaaaaatcattctcaatagtttcttgatcattcaacaacaattc 127  Q
    ||||||||||||||| ||| ||||||||| ||||||||||||| |||||| | ||||| || ||||| |||| |   |||||||||||||| || | |||    
T  36169 tcatgcaacttagtttaacaacaattgcagcataatcaattcatatcaagcttaataacaattcatt-tcaaca---tcttgatcattcaataatatttc 36074  T
Q  128 aagtaa 133  Q
    ||||||    
T  36073 aagtaa 36068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1461 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1461
Description:

Target: scaffold1461; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 194
Target Start/End: Original strand, 6 - 119
Alignment:
Q  81 aataaaaaatcattctcaatagtttcttgatcattcaacaacaattcaagtaagtataatttcatccataattcacttcataatcatttaaaaattcat- 179  Q
    ||||| || |||||||||| | |||||||||||||||| || ||||||||||| |  || |  ||||||||||||||| ||| ||| |||| | |||||     
T  6 aataacaattcattctcaacaatttcttgatcattcaataataattcaagtaaatgcaa-tcaatccataattcactttatattcacttaacatttcata 104  T
Q  180 aaagcttaacagttc 194  Q
    ||||||| |||||||    
T  105 aaagcttcacagttc 119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 58631 - 58595
Alignment:
Q  198 atcattatctttaataggtcacactaagtaccgaaag 234  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  58631 atcattatctttaataggtcacactatgtacctaaag 58595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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