View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4753_low_2 (Length: 650)

Name: NF4753_low_2
Description: NF4753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4753_low_2
NF4753_low_2
[»] chr8 (20 HSPs)
chr8 (18-348)||(12119010-12119340)
chr8 (347-574)||(12119392-12119624)
chr8 (431-527)||(14690715-14690811)
chr8 (571-631)||(12120183-12120243)
chr8 (215-275)||(22548419-22548479)
chr8 (205-275)||(32292157-32292227)
chr8 (205-275)||(34308339-34308409)
chr8 (205-275)||(34308795-34308865)
chr8 (215-275)||(41658975-41659035)
chr8 (205-260)||(22026611-22026666)
chr8 (226-275)||(12100906-12100955)
chr8 (226-275)||(17103298-17103347)
chr8 (215-264)||(22548865-22548914)
chr8 (231-275)||(21315996-21316040)
chr8 (226-264)||(25148193-25148231)
chr8 (205-275)||(27022199-27022269)
chr8 (215-264)||(25147763-25147811)
chr8 (215-275)||(6466472-6466532)
chr8 (231-275)||(9251101-9251145)
chr8 (205-257)||(12827114-12827166)
[»] chr7 (19 HSPs)
chr7 (58-163)||(20524563-20524668)
chr7 (215-275)||(28496070-28496130)
chr7 (215-275)||(43233173-43233233)
chr7 (205-275)||(9125175-9125245)
chr7 (206-275)||(2193472-2193541)
chr7 (206-275)||(28495480-28495549)
chr7 (215-275)||(42515760-42515820)
chr7 (205-264)||(13122364-13122423)
chr7 (205-264)||(13124995-13125054)
chr7 (205-275)||(7646338-7646408)
chr7 (205-275)||(36422467-36422537)
chr7 (457-530)||(20524700-20524773)
chr7 (224-277)||(29038899-29038952)
chr7 (224-275)||(6747955-6748006)
chr7 (224-275)||(42515308-42515359)
chr7 (205-275)||(18833502-18833572)
chr7 (350-403)||(25182504-25182557)
chr7 (224-264)||(2941636-2941676)
chr7 (215-259)||(26419105-26419149)
[»] chr6 (18 HSPs)
chr6 (58-163)||(30643450-30643555)
chr6 (205-275)||(17027391-17027461)
chr6 (215-275)||(20850537-20850597)
chr6 (205-275)||(9352278-9352348)
chr6 (215-283)||(2681090-2681158)
chr6 (205-275)||(7912094-7912164)
chr6 (215-264)||(13492560-13492609)
chr6 (215-275)||(7912526-7912586)
chr6 (205-260)||(13191373-13191428)
chr6 (216-283)||(17730980-17731047)
chr6 (205-264)||(23776667-23776726)
chr6 (205-263)||(9440717-9440775)
chr6 (226-275)||(20126063-20126112)
chr6 (215-264)||(23986187-23986236)
chr6 (350-403)||(23986267-23986320)
chr6 (226-275)||(27334309-27334358)
chr6 (226-275)||(27395049-27395098)
chr6 (457-533)||(30643340-30643416)
[»] chr2 (12 HSPs)
chr2 (58-142)||(11924194-11924278)
chr2 (205-275)||(32377767-32377837)
chr2 (205-275)||(30966450-30966520)
chr2 (205-275)||(32377576-32377646)
chr2 (205-275)||(30966906-30966976)
chr2 (226-275)||(24818541-24818590)
chr2 (226-275)||(25337878-25337927)
chr2 (347-388)||(3804350-3804391)
chr2 (238-283)||(8181254-8181299)
chr2 (226-275)||(16379153-16379202)
chr2 (231-275)||(16379609-16379653)
chr2 (231-275)||(33771217-33771261)
[»] chr3 (19 HSPs)
chr3 (205-281)||(14820364-14820440)
chr3 (205-263)||(16811607-16811665)
chr3 (205-282)||(13149959-13150036)
chr3 (205-264)||(27187189-27187248)
chr3 (205-275)||(11179894-11179964)
chr3 (225-275)||(28561961-28562011)
chr3 (205-275)||(50347962-50348032)
chr3 (206-275)||(32386595-32386664)
chr3 (226-275)||(39653380-39653429)
chr3 (215-263)||(16811153-16811201)
chr3 (205-264)||(14814176-14814235)
chr3 (205-275)||(8067496-8067566)
chr3 (205-275)||(13150414-13150484)
chr3 (226-275)||(25239008-25239057)
chr3 (215-264)||(31284146-31284195)
chr3 (226-275)||(37045248-37045297)
chr3 (226-275)||(41473757-41473806)
chr3 (231-283)||(20885003-20885055)
chr3 (347-395)||(26436082-26436130)
[»] scaffold0322 (1 HSPs)
scaffold0322 (205-275)||(19182-19252)
[»] chr5 (19 HSPs)
chr5 (205-275)||(8641895-8641965)
chr5 (215-275)||(3886471-3886531)
chr5 (205-275)||(3886917-3886987)
chr5 (205-275)||(34371828-34371898)
chr5 (218-275)||(2474165-2474222)
chr5 (205-264)||(2474632-2474691)
chr5 (224-283)||(29679986-29680045)
chr5 (205-264)||(34372295-34372354)
chr5 (205-259)||(15512872-15512926)
chr5 (226-275)||(17445336-17445385)
chr5 (215-275)||(189284-189344)
chr5 (231-283)||(30684897-30684949)
chr5 (205-264)||(21883945-21884004)
chr5 (205-275)||(2194020-2194090)
chr5 (205-275)||(42788506-42788576)
chr5 (226-275)||(1880292-1880341)
chr5 (226-275)||(10927284-10927333)
chr5 (231-275)||(1822122-1822166)
chr5 (215-275)||(20858412-20858472)
[»] chr1 (23 HSPs)
chr1 (205-275)||(20054396-20054466)
chr1 (205-275)||(20054852-20054922)
chr1 (205-275)||(20055308-20055378)
chr1 (205-275)||(20055764-20055834)
chr1 (205-275)||(20056220-20056290)
chr1 (205-275)||(20056676-20056746)
chr1 (205-275)||(20057123-20057193)
chr1 (205-275)||(20057579-20057649)
chr1 (205-264)||(16451793-16451852)
chr1 (205-264)||(16460946-16461005)
chr1 (205-275)||(50002935-50003005)
chr1 (206-275)||(20845522-20845591)
chr1 (205-274)||(35759924-35759993)
chr1 (215-275)||(50002577-50002637)
chr1 (205-275)||(20053940-20054010)
chr1 (205-275)||(20060200-20060270)
chr1 (205-275)||(38341122-38341192)
chr1 (205-275)||(52250422-52250492)
chr1 (215-275)||(35759478-35759538)
chr1 (215-275)||(46693605-46693665)
chr1 (205-264)||(52250770-52250829)
chr1 (205-264)||(52251107-52251166)
chr1 (218-275)||(49996553-49996610)
[»] scaffold0389 (1 HSPs)
scaffold0389 (215-275)||(13403-13463)
[»] chr4 (16 HSPs)
chr4 (215-275)||(4127282-4127342)
chr4 (215-275)||(15268037-15268097)
chr4 (215-274)||(35477877-35477936)
chr4 (206-275)||(24629291-24629360)
chr4 (215-275)||(35871843-35871903)
chr4 (205-275)||(23350137-23350207)
chr4 (205-283)||(50398848-50398926)
chr4 (215-275)||(14571552-14571612)
chr4 (215-275)||(14572018-14572078)
chr4 (215-275)||(49998852-49998912)
chr4 (206-261)||(50399334-50399389)
chr4 (205-275)||(7678476-7678546)
chr4 (234-275)||(4127772-4127813)
chr4 (226-275)||(23943117-23943166)
chr4 (231-275)||(3169422-3169466)
chr4 (231-275)||(8467693-8467737)
[»] scaffold0022 (3 HSPs)
scaffold0022 (205-275)||(162994-163064)
scaffold0022 (215-275)||(162547-162608)
scaffold0022 (215-275)||(163287-163347)
[»] scaffold0217 (1 HSPs)
scaffold0217 (218-275)||(526-583)
[»] scaffold0243 (1 HSPs)
scaffold0243 (205-275)||(1436-1506)
[»] scaffold0020 (1 HSPs)
scaffold0020 (205-275)||(107323-107393)
[»] scaffold0002 (2 HSPs)
scaffold0002 (205-275)||(154973-155043)
scaffold0002 (205-275)||(154518-154588)
[»] scaffold0065 (1 HSPs)
scaffold0065 (215-264)||(62977-63026)
[»] scaffold0018 (1 HSPs)
scaffold0018 (226-275)||(10515-10564)
[»] scaffold0168 (1 HSPs)
scaffold0168 (215-275)||(2958-3018)
[»] scaffold0005 (2 HSPs)
scaffold0005 (215-275)||(245298-245358)
scaffold0005 (215-275)||(245764-245824)
[»] scaffold1519 (1 HSPs)
scaffold1519 (205-275)||(1561-1631)
[»] scaffold0499 (1 HSPs)
scaffold0499 (226-263)||(1932-1969)
[»] scaffold0333 (2 HSPs)
scaffold0333 (226-275)||(4776-4825)
scaffold0333 (226-275)||(5236-5285)
[»] scaffold0024 (1 HSPs)
scaffold0024 (206-275)||(105936-106005)
[»] scaffold0277 (1 HSPs)
scaffold0277 (231-275)||(14588-14632)


Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 348
Target Start/End: Original strand, 12119010 - 12119340
Alignment:
Q  18 tgaacaggaagacataaaaatcatgcgtgcattagaaacgcaccacagcacacttgacaccaatttcagaacctagagcttcacactgttcagcaatttg 117  Q
    ||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||    
T  12119010 tgaacaggacgacataaaaatcatgcttgcattagaaactcaccacagcacacttgacaccaatttcagaacctagagcttcaaactgttcaggaacttg 12119109  T
Q  118 atatgcaagctccctagattaagaaataggttacaacaaaagaaatatactagttaaaaaatatgattcagtgggaaatttatcgcgccagactgaattc 217  Q
    |||||||||||||||| |||||||||||||||| |||| ||||||||||||||||| |||||||||||||||| |||   ||  | || ||||||| |||    
T  12119110 atatgcaagctccctacattaagaaataggttagaacagaagaaatatactagttagaaaatatgattcagtgagaatcgtaatgtgctagactgatttc 12119209  T
Q  218 aggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctcagttgcacgactcacatacttctttgggaatttcctagaacgt 317  Q
    |||||| || ||| ||||||||||||||||||||||||||||  |||| ||||||||| | ||| ||||| ||||||| |||||||| |||| |||||||    
T  12119210 aggatcaccaacgaaccccacaaaccaacacgagtattttcaatgtgctttgtcctcactcgcatgactcgcatacttttttgggaacttcccagaacgt 12119309  T
Q  318 cgcctatccaaatactactccaagtcaagca 348  Q
     ||| ||||||||||||||||||||||||||    
T  12119310 tgccaatccaaatactactccaagtcaagca 12119340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 347 - 574
Target Start/End: Original strand, 12119392 - 12119624
Alignment:
Q  347 catagttaagtgtgcttgacttagcgtaatatttggatggatgaccttctg---ggaagtggggtcggtccgcaatcctaaaagcgggacgttaaaaatt 443  Q
    |||||||||  ||||||| ||||| || |||||||||||||| |||||||    ||||||||||||| || |||||||| ||||||||||||||||||||    
T  12119392 catagttaaacgtgcttgccttagagtgatatttggatggataaccttcttctaggaagtggggtcgatcggcaatcctgaaagcgggacgttaaaaatt 12119491  T
Q  444 aatctaata--aaattgaattatatgaatactaaatctacaatgaggtatcaaagtatcaaaccttgtgggagagattacacaagcaaagaacccgtgtc 541  Q
    |||||||||  |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12119492 aatctaatataaaattgaattatatgaatactaaatctacaatgacgtatcgaagtatcaaaccttgtgggagagattacacaagcaaagaacccgtgtc 12119591  T
Q  542 gtggtgcatctaagagggcatgcaatataggaa 574  Q
    |||||||||||||||||||||||||||||||||    
T  12119592 gtggtgcatctaagagggcatgcaatataggaa 12119624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 431 - 527
Target Start/End: Original strand, 14690715 - 14690811
Alignment:
Q  431 gacgttaaaaattaatctaataaaattgaattatatgaatactaaatctacaatgaggtatcaaagtatcaaaccttgtgggagagattacacaagc 527  Q
    ||||||| |||||||||  | |||||||||||||||||||| ||||||||  || ||||||||||||||||||||||||||||||||||||||||||    
T  14690715 gacgttacaaattaatcggacaaaattgaattatatgaatattaaatctatgatcaggtatcaaagtatcaaaccttgtgggagagattacacaagc 14690811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 571 - 631
Target Start/End: Original strand, 12120183 - 12120243
Alignment:
Q  571 ggaaaagagaatgtctcacggtggaatcccggcaggcggcagcgtttttgacagcagctat 631  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||    
T  12120183 ggaaaagagaatgtctcacggtggaatcccggcaggcagcagcgtttttggaagcagctat 12120243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 22548419 - 22548479
Alignment:
Q  215 ttcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||||||| |||||| |||||||||||||||||||||| |||||||||||  |||||||||    
T  22548419 ttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctca 22548479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 205 - 275
Target Start/End: Complemental strand, 32292227 - 32292157
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||  |||||||| |||||| ||||| |||||||||||||||| |||||||||||  |||||||||    
T  32292227 ccagactgctttcaggattgccgactgaccctacaaaccaacacgagtcttttcagcgtgttttgtcctca 32292157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 34308339 - 34308409
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||  |||||||| |||||| |||||||||||||| ||||||| |||||||||||  |||||||||    
T  34308339 ccagactgctttcaggattgccgactgaccccacaaaccagcacgagtcttttcagcgtgttttgtcctca 34308409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 34308795 - 34308865
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||  |||||||| || ||| |||||||||||||||||||||| |||||||||||  |||||||||    
T  34308795 ccagactgctttcaggattgctgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctca 34308865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 41658975 - 41659035
Alignment:
Q  215 ttcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||| || |||||| |||||||||||||||||||||| |||||||||||  |||||||||    
T  41658975 ttcagcattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctca 41659035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 205 - 260
Target Start/End: Complemental strand, 22026666 - 22026611
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcag 260  Q
    ||||||||  |||||||| |||||| |||||||||||||||||||||| |||||||    
T  22026666 ccagactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcag 22026611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 12100955 - 12100906
Alignment:
Q  226 cgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||| |||||||||||||||||||||| |||||||||||  |||||||||    
T  12100955 cgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctca 12100906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 17103347 - 17103298
Alignment:
Q  226 cgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||| |||||||||||||||||||||| |||||||||||  |||||||||    
T  17103347 cgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctca 17103298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 215 - 264
Target Start/End: Original strand, 22548865 - 22548914
Alignment:
Q  215 ttcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtg 264  Q
    |||||||| |||||| |||||||||||||||||||||| | |||||||||    
T  22548865 ttcaggattgccgactgaccccacaaaccaacacgagtctgttcagcgtg 22548914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 231 - 275
Target Start/End: Original strand, 21315996 - 21316040
Alignment:
Q  231 gaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||||||||||||||||||||| |||||||||||  |||||||||    
T  21315996 gaccccacaaaccaacacgagtcttttcagcgtgttttgtcctca 21316040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 226 - 264
Target Start/End: Complemental strand, 25148231 - 25148193
Alignment:
Q  226 cgacggaccccacaaaccaacacgagtattttcagcgtg 264  Q
    |||| |||||||||||||||||||||| |||||||||||    
T  25148231 cgactgaccccacaaaccaacacgagtcttttcagcgtg 25148193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 27022199 - 27022269
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||  || ||||| | |||| |||||||||||||||||||||| |||| ||||||  |||||||||    
T  27022199 ccagactgcttttaggattgtcgactgaccccacaaaccaacacgagtctttttagcgtgttttgtcctca 27022269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 264
Target Start/End: Complemental strand, 25147811 - 25147763
Alignment:
Q  215 ttcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtg 264  Q
    |||||||| |||||| ||||| |||||||||||||||| |||||||||||    
T  25147811 ttcaggattgccgactgaccc-acaaaccaacacgagtcttttcagcgtg 25147763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 215 - 275
Target Start/End: Complemental strand, 6466532 - 6466472
Alignment:
Q  215 ttcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||| || |||||| | |||||||||||||||| ||| |||| ||||||| |||||||||    
T  6466532 ttcagtattgccgactggccccacaaaccaacacaagtctttttagcgtgctttgtcctca 6466472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 231 - 275
Target Start/End: Complemental strand, 9251145 - 9251101
Alignment:
Q  231 gaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||||||||||||||||| ||| |||||||||||  |||||||||    
T  9251145 gaccccacaaaccaacacaagttttttcagcgtgttttgtcctca 9251101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 12827114 - 12827166
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtatttt 257  Q
    ||||||||  |||||||| | |||| |||||||||||||||||||||| ||||    
T  12827114 ccagactgctttcaggattgtcgactgaccccacaaaccaacacgagtctttt 12827166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 8e-29; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 58 - 163
Target Start/End: Original strand, 20524563 - 20524668
Alignment:
Q  58 caccacagcacacttgacaccaatttcagaacctagagcttcacactgttcagcaatttgatatgcaagctccctagattaagaaataggttacaacaaa 157  Q
    ||||||||| ||||||||||| ||||||||||||||||||||| ||||||||| |||||||  |||||||||||||||| |||||| |||||| |||| |    
T  20524563 caccacagcgcacttgacaccgatttcagaacctagagcttcaaactgttcagaaatttgaattgcaagctccctagatcaagaaaaaggttagaacaga 20524662  T
Q  158 agaaat 163  Q
    ||||||    
T  20524663 agaaat 20524668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 215 - 275
Target Start/End: Complemental strand, 28496130 - 28496070
Alignment:
Q  215 ttcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||||||| |||||| |||||||||||||||||||||| |||||||||||  |||||||||    
T  28496130 ttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctca 28496070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 215 - 275
Target Start/End: Complemental strand, 43233233 - 43233173
Alignment:
Q  215 ttcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||||||| |||||| |||||||||||||||||||||| |||||||||||  |||||||||    
T  43233233 ttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctca 43233173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 205 - 275
Target Start/End: Complemental strand, 9125245 - 9125175
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||  |||||||| |||||| |||||||||||||||||||||| |||||||| ||  |||||||||    
T  9125245 ccagactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcatgttttgtcctca 9125175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 206 - 275
Target Start/End: Complemental strand, 2193541 - 2193472
Alignment:
Q  206 cagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||||||  |||||||| |||||| ||||||||||| |||||||||| |||||||||||  |||||||||    
T  2193541 cagactgctttcaggattgccgactgaccccacaaatcaacacgagtcttttcagcgtgttttgtcctca 2193472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 206 - 275
Target Start/End: Original strand, 28495480 - 28495549
Alignment:
Q  206 cagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||||||  |||||||| |||||| |||||||||||||||||||||| ||||||||| |  |||||||||    
T  28495480 cagactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgggttttgtcctca 28495549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 215 - 275
Target Start/End: Complemental strand, 42515820 - 42515760
Alignment:
Q  215 ttcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||| ||| |||||| |||||||||||||||||||||| |||||||||||  |||||||||    
T  42515820 ttcaagattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctca 42515760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 205 - 264
Target Start/End: Original strand, 13122364 - 13122423
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtg 264  Q
    ||||||||  |||||||| |||||  |||||||||||||||||||||| |||||||||||    
T  13122364 ccagactgctttcaggattgccgattgaccccacaaaccaacacgagtcttttcagcgtg 13122423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 205 - 264
Target Start/End: Original strand, 13124995 - 13125054
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtg 264  Q
    ||||||||  |||||||| |||||| ||||||||||||||||||||||  ||||||||||    
T  13124995 ccagactgctttcaggattgccgactgaccccacaaaccaacacgagtcctttcagcgtg 13125054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 7646338 - 7646408
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||  ||||| || | |||| |||||||||||||||||||||| |||||||||||  |||||||||    
T  7646338 ccagactgctttcagcattgtcgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctca 7646408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 275
Target Start/End: Complemental strand, 36422537 - 36422467
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||  ||||| || | |||| |||||||||||||||||||||| |||||||||||  |||||||||    
T  36422537 ccagactgctttcagcattgtcgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctca 36422467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 457 - 530
Target Start/End: Original strand, 20524700 - 20524773
Alignment:
Q  457 tgaattatatgaatactaaatctacaatgaggtatcaaagtatcaaaccttgtgggagagattacacaagcaaa 530  Q
    ||||||||||||||| |||||| |  || || |||||||||||| |||||||||||||| || ||||| |||||    
T  20524700 tgaattatatgaatattaaatccatgatcagttatcaaagtatctaaccttgtgggagacatcacacatgcaaa 20524773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 224 - 277
Target Start/End: Original strand, 29038899 - 29038952
Alignment:
Q  224 gccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctcagt 277  Q
    |||||| ||||| |||||||||||||||| |||||||||||  |||||||||||    
T  29038899 gccgactgaccctacaaaccaacacgagtcttttcagcgtgttttgtcctcagt 29038952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 275
Target Start/End: Original strand, 6747955 - 6748006
Alignment:
Q  224 gccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||||| ||||| |||||||||||||||| |||||||||||  |||||||||    
T  6747955 gccgactgaccctacaaaccaacacgagtcttttcagcgtgttttgtcctca 6748006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 275
Target Start/End: Complemental strand, 42515359 - 42515308
Alignment:
Q  224 gccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||||| ||||| |||||||||||||||| |||||||||||  |||||||||    
T  42515359 gccgactgaccctacaaaccaacacgagtcttttcagcgtgttttgtcctca 42515308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 205 - 275
Target Start/End: Complemental strand, 18833572 - 18833502
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||  |||||||| ||||||  | |||||||| |||||||||| |||||||||||  |||||||||    
T  18833572 ccagactgctttcaggattgccgacttatcccacaaatcaacacgagtcttttcagcgtgttttgtcctca 18833502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 403
Target Start/End: Original strand, 25182504 - 25182557
Alignment:
Q  350 agttaagtgtgcttgacttagcgtaatatttggatggatgaccttctgggaagt 403  Q
    ||||||||||| ||||||| | ||| | |||||||||| |||||||||||||||    
T  25182504 agttaagtgtgtttgacttggagtagtctttggatggaggaccttctgggaagt 25182557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 2941636 - 2941676
Alignment:
Q  224 gccgacggaccccacaaaccaacacgagtattttcagcgtg 264  Q
    |||||| |||| ||||||||||||||||| |||||||||||    
T  2941636 gccgactgaccgcacaaaccaacacgagtcttttcagcgtg 2941676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 26419105 - 26419149
Alignment:
Q  215 ttcaggatcgccgacggaccccacaaaccaacacgagtattttca 259  Q
    |||||||| | |||| |||||||||||||||||||||| ||||||    
T  26419105 ttcaggattgtcgactgaccccacaaaccaacacgagtcttttca 26419149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 58 - 163
Target Start/End: Complemental strand, 30643555 - 30643450
Alignment:
Q  58 caccacagcacacttgacaccaatttcagaacctagagcttcacactgttcagcaatttgatatgcaagctccctagattaagaaataggttacaacaaa 157  Q
    ||||||||| ||||||||||| ||||||||||||||||||||| ||||||||| |||||||  |||||||||||||||| | ||||||||||| || | |    
T  30643555 caccacagcgcacttgacaccgatttcagaacctagagcttcaaactgttcagaaatttgaattgcaagctccctagatcacgaaataggttagaagaga 30643456  T
Q  158 agaaat 163  Q
    ||||||    
T  30643455 agaaat 30643450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 17027391 - 17027461
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||  |||||||| |||||| |||||||||||||||||||||| |||||||||||  |||||||||    
T  17027391 ccagactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctca 17027461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 215 - 275
Target Start/End: Complemental strand, 20850597 - 20850537
Alignment:
Q  215 ttcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||||||| |||||| |||||||||||||||||||||| |||||||||||  |||||||||    
T  20850597 ttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctca 20850537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 205 - 275
Target Start/End: Complemental strand, 9352348 - 9352278
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||  |||||||| |||||| |||||||||||||||||||||| |||||||| ||  |||||||||    
T  9352348 ccagactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcatgttttgtcctca 9352278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 215 - 283
Target Start/End: Original strand, 2681090 - 2681158
Alignment:
Q  215 ttcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctcagttgcacg 283  Q
    |||||||| |||||| |||||||||||||||||||||| || ||| ||||  ||||||||| |||||||    
T  2681090 ttcaggattgccgactgaccccacaaaccaacacgagtcttctcaacgtgttttgtcctcacttgcacg 2681158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 275
Target Start/End: Complemental strand, 7912164 - 7912094
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||  |||||||| | |||| |||||||||||||||||| ||| |||||||||||  |||||||||    
T  7912164 ccagactgctttcaggattgtcgactgaccccacaaaccaacacaagtcttttcagcgtgttttgtcctca 7912094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 215 - 264
Target Start/End: Complemental strand, 13492609 - 13492560
Alignment:
Q  215 ttcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtg 264  Q
    |||| ||| |||||| |||||||||||||||||||||| |||||||||||    
T  13492609 ttcaagattgccgactgaccccacaaaccaacacgagtcttttcagcgtg 13492560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 215 - 275
Target Start/End: Complemental strand, 7912586 - 7912526
Alignment:
Q  215 ttcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||||||| ||||||  |||||||||||||||| |||| |||||||||||  |||||||||    
T  7912586 ttcaggattgccgactaaccccacaaaccaacatgagtcttttcagcgtgttttgtcctca 7912526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 260
Target Start/End: Original strand, 13191373 - 13191428
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcag 260  Q
    ||||||||  |||| ||| |||||| |||||||||||||||||||||| |||||||    
T  13191373 ccagactgctttcaagattgccgactgaccccacaaaccaacacgagtcttttcag 13191428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 283
Target Start/End: Original strand, 17730980 - 17731047
Alignment:
Q  216 tcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctcagttgcacg 283  Q
    ||||||| | |||| ||||| |||||||||||||||| |||| ||||||  ||||||||| |||||||    
T  17730980 tcaggattgtcgactgaccctacaaaccaacacgagtctttttagcgtgttttgtcctcacttgcacg 17731047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 264
Target Start/End: Complemental strand, 23776726 - 23776667
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtg 264  Q
    ||||||||  |||||||| |||||| ||| |||||||||||||||| | |||||||||||    
T  23776726 ccagactgctttcaggattgccgactgactccacaaaccaacacgaatcttttcagcgtg 23776667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 205 - 263
Target Start/End: Original strand, 9440717 - 9440775
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgt 263  Q
    ||||||||  |||| ||| |||||| |||||||||||||| ||||||| ||||||||||    
T  9440717 ccagactgctttcaagattgccgactgaccccacaaaccagcacgagttttttcagcgt 9440775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 20126063 - 20126112
Alignment:
Q  226 cgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||||||||| |||||||||||||||| ||||||| |||  |||||||||    
T  20126063 cgacggaccctacaaaccaacacgagtcttttcagtgtgttttgtcctca 20126112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 264
Target Start/End: Original strand, 23986187 - 23986236
Alignment:
Q  215 ttcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtg 264  Q
    ||||| || |||||| |||||||||||||||||| ||| |||||||||||    
T  23986187 ttcagaattgccgactgaccccacaaaccaacacaagtcttttcagcgtg 23986236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 403
Target Start/End: Complemental strand, 23986320 - 23986267
Alignment:
Q  350 agttaagtgtgcttgacttagcgtaatatttggatggatgaccttctgggaagt 403  Q
    ||||||||||||||||||| | | ||| || |||||| ||||||||||||||||    
T  23986320 agttaagtgtgcttgacttggagcaattttgggatgggtgaccttctgggaagt 23986267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 27334358 - 27334309
Alignment:
Q  226 cgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||| ||||||||||| |||||||||| |||||||||||  |||||||||    
T  27334358 cgactgaccccacaaatcaacacgagtcttttcagcgtgttttgtcctca 27334309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 27395098 - 27395049
Alignment:
Q  226 cgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||| ||||||||||| |||||||||| |||||||||||  |||||||||    
T  27395098 cgactgaccccacaaatcaacacgagtcttttcagcgtgttttgtcctca 27395049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 457 - 533
Target Start/End: Complemental strand, 30643416 - 30643340
Alignment:
Q  457 tgaattatatgaatactaaatctacaatgaggtatcaaagtatcaaaccttgtgggagagattacacaagcaaagaa 533  Q
    ||||||||||||||| |||||| |  || || |||| ||||||| |||||||||||||| || || || ||||||||    
T  30643416 tgaattatatgaatattaaatccatgatcagttatcgaagtatctaaccttgtgggagacatcacgcatgcaaagaa 30643340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 58 - 142
Target Start/End: Complemental strand, 11924278 - 11924194
Alignment:
Q  58 caccacagcacacttgacaccaatttcagaacctagagcttcacactgttcagcaatttgatatgcaagctccctagattaagaa 142  Q
    ||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||   ||||||||||||| |||||||    
T  11924278 caccacaacacacttgacaccattttcagaacctagagcttcaaactgttcagcaatttgaatggcaagctccctagtttaagaa 11924194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 32377767 - 32377837
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||  |||||||| |||||| |||||||||||||||||||||| |||||||||||  |||||||||    
T  32377767 ccagactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctca 32377837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 205 - 275
Target Start/End: Complemental strand, 30966520 - 30966450
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||  |||||||| |||||| |||||||||||||||||||||| |||||| ||||  |||||||||    
T  30966520 ccagactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcaacgtgttttgtcctca 30966450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 32377576 - 32377646
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||  || ||||| |||||| |||||||||||||||||||||| |||||||||||  |||||||||    
T  32377576 ccagactgcttttaggattgccgactgaccccacaaaccaacacgagttttttcagcgtgttttgtcctca 32377646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 275
Target Start/End: Complemental strand, 30966976 - 30966906
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||  |||||||| |||||| ||| |||||||||||||||||| |||||| ||||  |||||||||    
T  30966976 ccagactgctttcaggattgccgactgactccacaaaccaacacgagtcttttcaacgtgttttgtcctca 30966906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 24818590 - 24818541
Alignment:
Q  226 cgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||| |||||||||||||||||||||| |||||||||||  |||||||||    
T  24818590 cgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctca 24818541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 25337878 - 25337927
Alignment:
Q  226 cgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||| |||||||||||||||||||||| |||||||||||  |||||||||    
T  25337878 cgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctca 25337927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 388
Target Start/End: Complemental strand, 3804391 - 3804350
Alignment:
Q  347 catagttaagtgtgcttgacttagcgtaatatttggatggat 388  Q
    ||||||||||||||  |||||||| |||||||||||||||||    
T  3804391 catagttaagtgtgtctgacttagagtaatatttggatggat 3804350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 283
Target Start/End: Original strand, 8181254 - 8181299
Alignment:
Q  238 caaaccaacacgagtattttcagcgtgcattgtcctcagttgcacg 283  Q
    ||||||||||||||| |||||||||||  ||||||||| |||||||    
T  8181254 caaaccaacacgagtcttttcagcgtgttttgtcctcacttgcacg 8181299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 16379202 - 16379153
Alignment:
Q  226 cgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||| ||||| |||||||||||||||| |||||||||||  |||||||||    
T  16379202 cgactgaccctacaaaccaacacgagtcttttcagcgtgttttgtcctca 16379153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 231 - 275
Target Start/End: Complemental strand, 16379653 - 16379609
Alignment:
Q  231 gaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||| |||||||||||||||| |||||||||||  |||||||||    
T  16379653 gaccctacaaaccaacacgagtcttttcagcgtgttttgtcctca 16379609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 231 - 275
Target Start/End: Complemental strand, 33771261 - 33771217
Alignment:
Q  231 gaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||||||||||||||||||||| ||||||| |||  |||||||||    
T  33771261 gaccccacaaaccaacacgagtcttttcagtgtgttttgtcctca 33771217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 205 - 281
Target Start/End: Complemental strand, 14820440 - 14820364
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctcagttgca 281  Q
    ||||||||  |||||||| |||||| |||||||||||||||||||||| |||||||||||  ||||||||| |||||    
T  14820440 ccagactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcacttgca 14820364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 205 - 263
Target Start/End: Complemental strand, 16811665 - 16811607
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgt 263  Q
    ||||||||  |||||||| |||||| |||||||||||||||||||||| ||||||||||    
T  16811665 ccagactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgt 16811607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 205 - 282
Target Start/End: Original strand, 13149959 - 13150036
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctcagttgcac 282  Q
    ||||||||  ||||| || | |||| |||||||||||||||||||||| |||||||||||  ||||||||| ||||||    
T  13149959 ccagactgctttcagcattgtcgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcacttgcac 13150036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 205 - 264
Target Start/End: Original strand, 27187189 - 27187248
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtg 264  Q
    ||||||||  ||||| || |||||| |||||||||||||||||||||| |||||||||||    
T  27187189 ccagactgttttcagaattgccgactgaccccacaaaccaacacgagtcttttcagcgtg 27187248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 11179894 - 11179964
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||  ||||| || | |||| |||||||||||||||||||||| |||||||||||  |||||||||    
T  11179894 ccagactgctttcagcattgtcgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctca 11179964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 275
Target Start/End: Complemental strand, 28562011 - 28561961
Alignment:
Q  225 ccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||| |||||||||||||||||||||| |||||||||||  |||||||||    
T  28562011 ccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctca 28561961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 275
Target Start/End: Complemental strand, 50348032 - 50347962
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||  ||||| || | |||| |||||||||||||||||||||| |||||||||||  |||||||||    
T  50348032 ccagactgctttcagcattgtcgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctca 50347962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 206 - 275
Target Start/End: Original strand, 32386595 - 32386664
Alignment:
Q  206 cagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||||||  |||| ||| |||||| |||||||||||||||||||||| |||| ||||||  |||||||||    
T  32386595 cagactgctttcaagattgccgactgaccccacaaaccaacacgagtctttttagcgtgttttgtcctca 32386664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 39653429 - 39653380
Alignment:
Q  226 cgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||| |||||||||||||||||||||| |||||||||||  |||||||||    
T  39653429 cgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctca 39653380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 16811201 - 16811153
Alignment:
Q  215 ttcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgt 263  Q
    |||||||| |||||| |||||||||||||||||||| | ||||||||||    
T  16811201 ttcaggattgccgaccgaccccacaaaccaacacgaatcttttcagcgt 16811153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 264
Target Start/End: Complemental strand, 14814235 - 14814176
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtg 264  Q
    ||||||||  ||||| || ||||||  ||||||||||||||||||||| |||||||||||    
T  14814235 ccagactgctttcagtattgccgactaaccccacaaaccaacacgagtcttttcagcgtg 14814176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 205 - 275
Target Start/End: Complemental strand, 8067566 - 8067496
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||  || ||||| |||||  |||| ||||||||||||||||| |||||||||||  |||||||||    
T  8067566 ccagactgcttttaggattgccgattgacctcacaaaccaacacgagtcttttcagcgtgttttgtcctca 8067496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 13150414 - 13150484
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||  ||||| || | |||| ||||||||||| |||||||||| |||||||||||  |||||||||    
T  13150414 ccagactgctttcagcattgtcgactgaccccacaaatcaacacgagtcttttcagcgtgttttgtcctca 13150484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 25239008 - 25239057
Alignment:
Q  226 cgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||| ||||| |||||||||||||||| |||||||||||  |||||||||    
T  25239008 cgactgaccctacaaaccaacacgagtcttttcagcgtgttttgtcctca 25239057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 264
Target Start/End: Original strand, 31284146 - 31284195
Alignment:
Q  215 ttcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtg 264  Q
    |||| ||| |||||| |||||||||||||||||||||| ||||| |||||    
T  31284146 ttcatgattgccgactgaccccacaaaccaacacgagtcttttcggcgtg 31284195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 37045297 - 37045248
Alignment:
Q  226 cgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||| ||||| |||||||||||||||| |||||||||||  |||||||||    
T  37045297 cgactgaccctacaaaccaacacgagtcttttcagcgtgttttgtcctca 37045248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 41473806 - 41473757
Alignment:
Q  226 cgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||| ||||||||||||||||||| || |||||||||||  |||||||||    
T  41473806 cgactgaccccacaaaccaacacgggtcttttcagcgtgttttgtcctca 41473757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 231 - 283
Target Start/End: Original strand, 20885003 - 20885055
Alignment:
Q  231 gaccccacaaaccaacacgagtattttcagcgtgcattgtcctcagttgcacg 283  Q
    ||||| |||||||||||||||| |||||||||||  ||||||| | |||||||    
T  20885003 gaccctacaaaccaacacgagtcttttcagcgtgttttgtcctaacttgcacg 20885055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 347 - 395
Target Start/End: Complemental strand, 26436130 - 26436082
Alignment:
Q  347 catagttaagtgtgcttgacttagcgtaatatttggatggatgaccttc 395  Q
    ||||||||||||| ||||| |||| ||| ||||||||||| ||||||||    
T  26436130 catagttaagtgttcttgaattagagtagtatttggatgggtgaccttc 26436082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0322 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0322
Description:

Target: scaffold0322; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 205 - 275
Target Start/End: Complemental strand, 19252 - 19182
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||  |||||||| |||||| |||||||||||||||||||||| |||||||||||  |||||||||    
T  19252 ccagactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctca 19182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 8641895 - 8641965
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||  |||||||| |||||| |||||||||||||||||||||| |||||||||||  |||||||||    
T  8641895 ccagactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctca 8641965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 3886471 - 3886531
Alignment:
Q  215 ttcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||||||| |||||| |||||||||||||||||||||| |||||||||||  |||||||||    
T  3886471 ttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctca 3886531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 3886917 - 3886987
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||  |||||||| |||||| |||||||||||||||||||||| || ||||||||  |||||||||    
T  3886917 ccagactgctttcaggattgccgactgaccccacaaaccaacacgagtcttgtcagcgtgttttgtcctca 3886987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 205 - 275
Target Start/End: Complemental strand, 34371898 - 34371828
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||  |||||||| |||||| |||||||||||||||||||||| |||||| ||||  |||||||||    
T  34371898 ccagactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcaacgtgttttgtcctca 34371828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 218 - 275
Target Start/End: Complemental strand, 2474222 - 2474165
Alignment:
Q  218 aggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||| |||||| |||||||||||||||||||||| |||||||||||  |||||||||    
T  2474222 aggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctca 2474165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 205 - 264
Target Start/End: Complemental strand, 2474691 - 2474632
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtg 264  Q
    ||||||||  || ||||| |||||| |||||||||||||||||||||| |||||||||||    
T  2474691 ccagactgcttttaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtg 2474632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 224 - 283
Target Start/End: Original strand, 29679986 - 29680045
Alignment:
Q  224 gccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctcagttgcacg 283  Q
    |||||| ||||| |||||||||||||||| |||||||||||  ||||||||| |||||||    
T  29679986 gccgactgaccctacaaaccaacacgagtcttttcagcgtgttttgtcctcatttgcacg 29680045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 205 - 264
Target Start/End: Complemental strand, 34372354 - 34372295
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtg 264  Q
    ||||||||  |||||||| |||||| ||| ||| ||||||||||||||||||||||||||    
T  34372354 ccagactgctttcaggattgccgactgacgccataaaccaacacgagtattttcagcgtg 34372295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 259
Target Start/End: Original strand, 15512872 - 15512926
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttca 259  Q
    ||||||||  |||||||| |||||| |||||||||||||||||||||| ||||||    
T  15512872 ccagactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttca 15512926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 17445336 - 17445385
Alignment:
Q  226 cgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||| |||||||||||||||||||||| |||||||||||  |||||||||    
T  17445336 cgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctca 17445385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 215 - 275
Target Start/End: Complemental strand, 189344 - 189284
Alignment:
Q  215 ttcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||||||| || ||| || ||||||||||||||||||| |||||||||||  |||||||||    
T  189344 ttcaggattgcggactgatcccacaaaccaacacgagtcttttcagcgtgttttgtcctca 189284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 231 - 283
Target Start/End: Original strand, 30684897 - 30684949
Alignment:
Q  231 gaccccacaaaccaacacgagtattttcagcgtgcattgtcctcagttgcacg 283  Q
    |||||||||||||||||||||| |||||||||||  ||||||||  |||||||    
T  30684897 gaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcgcttgcacg 30684949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 264
Target Start/End: Original strand, 21883945 - 21884004
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtg 264  Q
    ||||||||  |||| ||| | |||| |||||||||||||||||||||| |||||||||||    
T  21883945 ccagactgctttcaagattgtcgactgaccccacaaaccaacacgagtcttttcagcgtg 21884004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 205 - 275
Target Start/End: Complemental strand, 2194090 - 2194020
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||  ||||| || | |||| ||||||||||||||||||| || |||||||||||  |||||||||    
T  2194090 ccagactgctttcagcattgtcgactgaccccacaaaccaacacgggtcttttcagcgtgttttgtcctca 2194020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 42788506 - 42788576
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||  |||||||| | |||| ||| ||||||||||||||| || |||||||||||  |||||||||    
T  42788506 ccagactgctttcaggattgtcgactgactccacaaaccaacacgggtcttttcagcgtgttttgtcctca 42788576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 1880341 - 1880292
Alignment:
Q  226 cgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||||||||  |||||||||||||||| |||||||||||  |||||||||    
T  1880341 cgacggaccttacaaaccaacacgagtcttttcagcgtgttttgtcctca 1880292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 10927284 - 10927333
Alignment:
Q  226 cgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||| ||||| |||||||||||||||| |||||||||||  |||||||||    
T  10927284 cgaccgaccctacaaaccaacacgagtcttttcagcgtgttttgtcctca 10927333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 231 - 275
Target Start/End: Complemental strand, 1822166 - 1822122
Alignment:
Q  231 gaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||| |||||||||||||||| |||||||||||  |||||||||    
T  1822166 gaccctacaaaccaacacgagtcttttcagcgtgttttgtcctca 1822122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 20858412 - 20858472
Alignment:
Q  215 ttcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||||||| | |||| ||||  ||||| ||||||||||||||||||||||  |||||||||    
T  20858412 ttcaggattgtcgactgacctaacaaatcaacacgagtattttcagcgtgttttgtcctca 20858472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 20054396 - 20054466
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||  |||||||| |||||| |||||||||||||||||||||| |||||||||||  |||||||||    
T  20054396 ccagactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctca 20054466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 20054852 - 20054922
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||  |||||||| |||||| |||||||||||||||||||||| |||||||||||  |||||||||    
T  20054852 ccagactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctca 20054922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 20055308 - 20055378
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||  |||||||| |||||| |||||||||||||||||||||| |||||||||||  |||||||||    
T  20055308 ccagactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctca 20055378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 20055764 - 20055834
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||  |||||||| |||||| |||||||||||||||||||||| |||||||||||  |||||||||    
T  20055764 ccagactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctca 20055834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 20056220 - 20056290
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||  |||||||| |||||| |||||||||||||||||||||| |||||||||||  |||||||||    
T  20056220 ccagactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctca 20056290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 20056676 - 20056746
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||  |||||||| |||||| |||||||||||||||||||||| |||||||||||  |||||||||    
T  20056676 ccagactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctca 20056746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 20057123 - 20057193
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||  |||||||| |||||| |||||||||||||||||||||| |||||||||||  |||||||||    
T  20057123 ccagactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctca 20057193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 20057579 - 20057649
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||  |||||||| |||||| |||||||||||||||||||||| |||||||||||  |||||||||    
T  20057579 ccagactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctca 20057649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 205 - 264
Target Start/End: Original strand, 16451793 - 16451852
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtg 264  Q
    ||||||||  |||||||| |||||| |||||||||||||||||||||| |||||||||||    
T  16451793 ccagactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtg 16451852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 205 - 264
Target Start/End: Original strand, 16460946 - 16461005
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtg 264  Q
    ||||||||  |||||||| |||||| |||||||||||||||||||||| |||||||||||    
T  16460946 ccagactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtg 16461005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 50002935 - 50003005
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||  |||||||| || ||| |||||||||||||||||||||| |||||||||||  |||||||||    
T  50002935 ccagactgctttcaggattgctgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctca 50003005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 206 - 275
Target Start/End: Original strand, 20845522 - 20845591
Alignment:
Q  206 cagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||||||  |||| ||| |||||| |||||||||||||||||||||| |||||||||||  |||||||||    
T  20845522 cagactgctttcaagattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctca 20845591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 205 - 274
Target Start/End: Original strand, 35759924 - 35759993
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctc 274  Q
    ||||||||  |||| ||| |||||| |||||||||||||||||||||| |||||||||||  ||||||||    
T  35759924 ccagactgctttcatgattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctc 35759993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 50002577 - 50002637
Alignment:
Q  215 ttcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||||||| | |||| |||||||||||||||||||||| |||||||||||  |||||||||    
T  50002577 ttcaggattgtcgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctca 50002637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 20053940 - 20054010
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||  |||||||| | |||| |||||||||||||||||||||| |||||||| ||  |||||||||    
T  20053940 ccagactgctttcaggattgtcgactgaccccacaaaccaacacgagtcttttcagcatgttttgtcctca 20054010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 20060200 - 20060270
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||  |||||||| |||||| |||||||||||||||||||||| ||| || ||||  |||||||||    
T  20060200 ccagactgctttcaggattgccgactgaccccacaaaccaacacgagtctttccatcgtgttttgtcctca 20060270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 275
Target Start/End: Complemental strand, 38341192 - 38341122
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||  |||||||| |||||| ||||||| |||||||||||||| ||||| |||||  |||||||||    
T  38341192 ccagactgctttcaggattgccgactgaccccataaaccaacacgagtcttttccgcgtgttttgtcctca 38341122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 275
Target Start/End: Complemental strand, 52250492 - 52250422
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||  ||||| || | |||| |||||||||||||||||||||| |||||||||||  |||||||||    
T  52250492 ccagactgctttcagcattgtcgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctca 52250422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 35759478 - 35759538
Alignment:
Q  215 ttcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||| ||| |||||| ||||||| |||||||||||||| |||||||||||  |||||||||    
T  35759478 ttcatgattgccgactgaccccaaaaaccaacacgagtcttttcagcgtgttttgtcctca 35759538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 46693605 - 46693665
Alignment:
Q  215 ttcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||||||| | |||| ||||||||||||||||||| || |||||||||||  |||||||||    
T  46693605 ttcaggattgtcgactgaccccacaaaccaacacgggtcttttcagcgtgttttgtcctca 46693665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 264
Target Start/End: Complemental strand, 52250829 - 52250770
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtg 264  Q
    ||||||||  ||||| || | |||| |||||||||||||||||||||| |||||||||||    
T  52250829 ccagactgctttcagcattgtcgactgaccccacaaaccaacacgagtcttttcagcgtg 52250770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 264
Target Start/End: Complemental strand, 52251166 - 52251107
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtg 264  Q
    ||||||||  ||||| || | |||| |||||||||||||||||||||| |||||||||||    
T  52251166 ccagactgctttcagcattgtcgactgaccccacaaaccaacacgagtcttttcagcgtg 52251107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 275
Target Start/End: Original strand, 49996553 - 49996610
Alignment:
Q  218 aggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||| |||||| |||||||||||| |||| |||| |||||||||||  |||||||||    
T  49996553 aggattgccgactgaccccacaaactaacaagagtcttttcagcgtgttttgtcctca 49996610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0389 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0389
Description:

Target: scaffold0389; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 13403 - 13463
Alignment:
Q  215 ttcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||||||| |||||| |||||||||||||||||||||| |||||||||||  |||||||||    
T  13403 ttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctca 13463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 4127282 - 4127342
Alignment:
Q  215 ttcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||||||| |||||| |||||||||||||||||||||| |||||||||||  |||||||||    
T  4127282 ttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctca 4127342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 15268037 - 15268097
Alignment:
Q  215 ttcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||||||| |||||| |||||||||||||||||||||| |||||||||||  |||||||||    
T  15268037 ttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctca 15268097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 274
Target Start/End: Complemental strand, 35477936 - 35477877
Alignment:
Q  215 ttcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctc 274  Q
    |||||||| |||||| |||||||||||||||||||||| |||||||||||  ||||||||    
T  35477936 ttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctc 35477877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 206 - 275
Target Start/End: Original strand, 24629291 - 24629360
Alignment:
Q  206 cagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||||||  |||||||| |||||| |||||||||||| ||||||||| |||||||||||  |||||||||    
T  24629291 cagactgctttcaggattgccgactgaccccacaaactaacacgagtcttttcagcgtgttttgtcctca 24629360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 215 - 275
Target Start/End: Complemental strand, 35871903 - 35871843
Alignment:
Q  215 ttcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||||||| |||||| || ||||||||||||||||||| |||||||||||  |||||||||    
T  35871903 ttcaggattgccgactgatcccacaaaccaacacgagtcttttcagcgtgttttgtcctca 35871843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 23350137 - 23350207
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||  ||||| || |||||| |||||||||||||||||||||| ||||||| |||  |||||||||    
T  23350137 ccagactgctttcagaattgccgactgaccccacaaaccaacacgagtcttttcagtgtgttttgtcctca 23350207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 283
Target Start/End: Original strand, 50398848 - 50398926
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctcagttgcacg 283  Q
    ||||||||  |||||||| |||||| ||||| |||||||||||||||| ||| || ||||  ||||||||| |||||||    
T  50398848 ccagactgctttcaggattgccgactgaccctacaaaccaacacgagtctttccaacgtgttttgtcctcacttgcacg 50398926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 14571552 - 14571612
Alignment:
Q  215 ttcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||  ||||| |||||||||||||||||||||| |||||| ||||  |||||||||    
T  14571552 ttcaggattcccgactgaccccacaaaccaacacgagtcttttcaacgtgttttgtcctca 14571612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 14572018 - 14572078
Alignment:
Q  215 ttcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||||||| |||||| |||||| ||||||||||||||| |||||| ||||  |||||||||    
T  14572018 ttcaggattgccgactgaccccgcaaaccaacacgagtcttttcaccgtgttttgtcctca 14572078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 215 - 275
Target Start/End: Complemental strand, 49998912 - 49998852
Alignment:
Q  215 ttcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||| || |||||| | |||||||||||||||||||| |||||||||||  |||||||||    
T  49998912 ttcagaattgccgactgtccccacaaaccaacacgagtcttttcagcgtgttttgtcctca 49998852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 261
Target Start/End: Complemental strand, 50399389 - 50399334
Alignment:
Q  206 cagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagc 261  Q
    |||||||  |||||||| |||||| ||||| |||||||||||||||| ||||||||    
T  50399389 cagactgctttcaggattgccgactgaccctacaaaccaacacgagtcttttcagc 50399334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 7678476 - 7678546
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||  ||||| || | |||| ||||||||||||| |||||||| |||||||||||  |||||||||    
T  7678476 ccagactgctttcagcattgtcgactgaccccacaaacctacacgagtcttttcagcgtgttttgtcctca 7678546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 275
Target Start/End: Original strand, 4127772 - 4127813
Alignment:
Q  234 cccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||||||||||||| |||||||||||  |||||||||    
T  4127772 cccacaaaccaacacgagtcttttcagcgtgttttgtcctca 4127813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 275
Target Start/End: Original strand, 23943117 - 23943166
Alignment:
Q  226 cgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||| ||||| |||||||||||||||| |||||||||||  |||||||||    
T  23943117 cgactgaccctacaaaccaacacgagtcttttcagcgtgttttgtcctca 23943166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 231 - 275
Target Start/End: Complemental strand, 3169466 - 3169422
Alignment:
Q  231 gaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||| ||||||||||||||||||||||| ||||  |||||||||    
T  3169466 gaccctacaaaccaacacgagtattttcaacgtgttttgtcctca 3169422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 231 - 275
Target Start/End: Original strand, 8467693 - 8467737
Alignment:
Q  231 gaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||||||||||||||||||||| |||||| ||||  |||||||||    
T  8467693 gaccccacaaaccaacacgagtcttttcaacgtgttttgtcctca 8467737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 162994 - 163064
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||  |||||||| |||||| | |||||||||||||||||||| |||||||||||  |||||||||    
T  162994 ccagactgttttcaggattgccgactggccccacaaaccaacacgagtcttttcagcgtgttttgtcctca 163064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 215 - 275
Target Start/End: Original strand, 162547 - 162608
Alignment:
Q  215 ttcaggatcgccgacggaccccacaaaccaacacgagt-attttcagcgtgcattgtcctca 275  Q
    |||||||| |||||| ||||||||||||||||||||||  |||||||||||  |||||||||    
T  162547 ttcaggattgccgactgaccccacaaaccaacacgagtctttttcagcgtgttttgtcctca 162608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 215 - 275
Target Start/End: Complemental strand, 163347 - 163287
Alignment:
Q  215 ttcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||||||| | |||| ||||| |||||||||||||||| |||||||||||  |||||||||    
T  163347 ttcaggattgtcgacagaccctacaaaccaacacgagtcttttcagcgtgttttgtcctca 163287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 218 - 275
Target Start/End: Complemental strand, 583 - 526
Alignment:
Q  218 aggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||| |||||| |||||||||||||||||||||| |||||||||||  |||||||||    
T  583 aggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctca 526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0243 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0243
Description:

Target: scaffold0243; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 275
Target Start/End: Complemental strand, 1506 - 1436
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||  |||||||| | |||| ||| |||||||||||||||||| |||||||||||  |||||||||    
T  1506 ccagactgctttcaggattgtcgactgacgccacaaaccaacacgagtcttttcagcgtgttttgtcctca 1436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 107323 - 107393
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||  ||||| || |||||| |||||||||||||||||||||| |||||||| ||  |||||||||    
T  107323 ccagactgctttcagaatagccgactgaccccacaaaccaacacgagtcttttcagcatgttttgtcctca 107393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 275
Target Start/End: Complemental strand, 155043 - 154973
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||  ||||| || | |||| |||||||||||||||||||||| |||||||||||  |||||||||    
T  155043 ccagactgctttcagcattgtcgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctca 154973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 205 - 275
Target Start/End: Complemental strand, 154588 - 154518
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||  ||||| || | |||| ||||||||||| |||||||||| |||||||||||  |||||||||    
T  154588 ccagactgctttcagcattgtcgactgaccccacaaatcaacacgagtcttttcagcgtgttttgtcctca 154518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 215 - 264
Target Start/End: Original strand, 62977 - 63026
Alignment:
Q  215 ttcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtg 264  Q
    |||||||| |||||| ||||||||||||||| |||||| |||||||||||    
T  62977 ttcaggattgccgactgaccccacaaaccaatacgagtcttttcagcgtg 63026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 10564 - 10515
Alignment:
Q  226 cgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||| |||||||||||||||||||||| |||||||||||  |||||||||    
T  10564 cgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctca 10515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 215 - 275
Target Start/End: Complemental strand, 3018 - 2958
Alignment:
Q  215 ttcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||| || |||||| ||||||||||| |||||||||| |||||||||||  |||||||||    
T  3018 ttcagcattgccgactgaccccacaaatcaacacgagtcttttcagcgtgttttgtcctca 2958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 215 - 275
Target Start/End: Complemental strand, 245358 - 245298
Alignment:
Q  215 ttcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||||||| |||||| |||||| ||||||||||||||| |||||| ||||  |||||||||    
T  245358 ttcaggattgccgactgaccccgcaaaccaacacgagtcttttcaccgtgttttgtcctca 245298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 215 - 275
Target Start/End: Complemental strand, 245824 - 245764
Alignment:
Q  215 ttcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||  ||||| |||||||||||||||||||||| |||||| ||||  |||||||||    
T  245824 ttcaggattcccgactgaccccacaaaccaacacgagtcttttcaacgtgttttgtcctca 245764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1519 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold1519
Description:

Target: scaffold1519; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 1561 - 1631
Alignment:
Q  205 ccagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    ||||||||  ||||||||   |||| |||||||||||||||||||||| |||| ||||||  |||||||||    
T  1561 ccagactgctttcaggattatcgactgaccccacaaaccaacacgagtctttttagcgtgttttgtcctca 1631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 263
Target Start/End: Original strand, 1932 - 1969
Alignment:
Q  226 cgacggaccccacaaaccaacacgagtattttcagcgt 263  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  1932 cgactgaccccacaaaccaacacgagtcttttcagcgt 1969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0333 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0333
Description:

Target: scaffold0333; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 4825 - 4776
Alignment:
Q  226 cgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||| ||||| |||||||||||||||| |||||||||||  |||||||||    
T  4825 cgactgaccctacaaaccaacacgagtcttttcagcgtgttttgtcctca 4776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0333; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 5285 - 5236
Alignment:
Q  226 cgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||| ||||| |||||||||||||||| |||||||||||  |||||||||    
T  5285 cgactgaccctacaaaccaacacgagtcttttcagcgtgttttgtcctca 5236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 275
Target Start/End: Complemental strand, 106005 - 105936
Alignment:
Q  206 cagactgaattcaggatcgccgacggaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||||||  ||||| || |||||| ||||| | |||||||||||||| |||||||||||  |||||||||    
T  106005 cagactgctttcagaattgccgactgaccctataaaccaacacgagtcttttcagcgtgttttgtcctca 105936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 231 - 275
Target Start/End: Original strand, 14588 - 14632
Alignment:
Q  231 gaccccacaaaccaacacgagtattttcagcgtgcattgtcctca 275  Q
    |||||||||||||||||||||| |||||||| ||  |||||||||    
T  14588 gaccccacaaaccaacacgagtcttttcagcatgttttgtcctca 14632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University