View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4753_low_21 (Length: 214)
Name: NF4753_low_21
Description: NF4753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4753_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 25910789 - 25910595
Alignment:
| Q |
1 |
acaaaacagatgagaggtaggtagtggcaagggagtagagccctgtagcttaaaaagaaaagaagcaggtagatatcatcacaaaacaatctaaatattc |
100 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25910789 |
acaaaacagatgagaggtaggtagtggcaagggagcagagcactgtagcttaaaaagaaaagaagcaggtagatatcatcacaaaacaatctaaatattc |
25910690 |
T |
|
| Q |
101 |
atcatttcacattaaaccatattgtttcaaatggatgaggattgtgcattacgagcaaaataaaaatggagaaggggatgtgaagatgaaaacac |
195 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25910689 |
atcatttcacattaaaccatattgtttcaaatggacgaggattgtgcattacgagcaaaataaaaatggagaaggggatgtgaagatgaaaacac |
25910595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 38879387 - 38879586
Alignment:
| Q |
1 |
acaaaacagatgagaggtaggtagtggcaagggagtagagccctgtagcttaaaaagaaaagaagcaggtagatatcatcacaaaacaatctaaatattc |
100 |
Q |
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|||||| |||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
38879387 |
acaaaatagatgagaggtaggtagtggtaagggagcagagcactgtagcttaaaaagaaaagaagtagatagatatcatcacaaaacaatctaaatattc |
38879486 |
T |
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| Q |
101 |
atcatttcacattaaaccatattgtttcaaatggatgaggatt-----gtgcattacgagcaaaataaaaatggagaaggggatgtgaagatgaaaacac |
195 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
38879487 |
atcatttcacattaaaccatattgtttcaaatggacgaggattgtgcagtgcattacgagcaaaataaaaatggagaaggggatatgaagatgaaaacac |
38879586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 26864169 - 26864100
Alignment:
| Q |
1 |
acaaaacagatgagaggtaggtagtggcaaggg-agtagagccctgtagcttaaaaagaaaagaagcagg |
69 |
Q |
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|||||||||||||||||||||| |||||||||| || ||||| ||||||||||||||||||||||||||| |
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| T |
26864169 |
acaaaacagatgagaggtaggtcgtggcaaggggagcagagcactgtagcttaaaaagaaaagaagcagg |
26864100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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