View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4753_low_3 (Length: 577)
Name: NF4753_low_3
Description: NF4753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4753_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 544; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 14 - 569
Target Start/End: Complemental strand, 40442649 - 40442094
Alignment:
| Q |
14 |
aatattaacatattatttgttctaaccattcgctcaaaattggtaaaagttgtcattcagttcttacattgagttagtggtaagatttatgaattaattt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40442649 |
aatattaacatattatttgttctaaccattcgctcaaaattggtaaaagttgtcattcagttcttacattgagttagtggtaagatttatgaattaattt |
40442550 |
T |
|
| Q |
114 |
tacaactatattcagatcctgcatttttattttgcaaatttgattgcagcactaagttggaagaaaagaacaacagatactaacagaaaagcaacaccct |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40442549 |
tacaactatattcagatcctgcatttttattttgcaaatttgattgcagcactaagttggaagaaaagaacaacagatactaacagaaaagcaacaccct |
40442450 |
T |
|
| Q |
214 |
caagcatgggcacatggtatttatggaattagaagccaagctatcttctcatttgaaaaattagcaagtctatatagatattgttttcatggattaggat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
40442449 |
caagcatgggcacatggtatttatggaattagaagccaagctatcttctcatttgaaaaattagcaagtctatatagatattgttttcatggcttaggat |
40442350 |
T |
|
| Q |
314 |
aagaggaacaatttcaatgaacatgtatggacatagaaaagtaatcagtgcctcaatctcaaggatgtccaaaatattgatcaagttggtaaaagattgt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
40442349 |
aagaggaacaatttcaatgaacatgtatggacatagaaaagtaatcagtgcctcaatcacaaggatgtccaaaatattgatcaagttggtaaaagattgt |
40442250 |
T |
|
| Q |
414 |
gtggttgtgttgtacctacagattccagggataagagttaagacaagtggattccacttttagtttctatcatactccgtgtgcttgaaaatttgtatac |
513 |
Q |
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| T |
40442249 |
gtggttgtgttgtgcctacagattccagggataagagttaagacaagtggattccacttttagtttctatcatactccgtgtgcttgaaaatttgtatac |
40442150 |
T |
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| Q |
514 |
tcattaaaattttgtgaagaaaatttgtacgcaagtaaagatgcatcagtataatc |
569 |
Q |
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| T |
40442149 |
tcattaaaattttgtgaagaaaatttgtacgcaagtaaagatgcatcagtataatc |
40442094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 522 - 569
Target Start/End: Complemental strand, 18812934 - 18812887
Alignment:
| Q |
522 |
attttgtgaagaaaatttgtacgcaagtaaagatgcatcagtataatc |
569 |
Q |
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||||||||||||||||||||| | |||||||| ||||||| ||||||| |
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| T |
18812934 |
attttgtgaagaaaatttgtatgtaagtaaaggtgcatcaatataatc |
18812887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 29475196 - 29475248
Alignment:
| Q |
57 |
taaaagttgtcattcagttcttacattgagttagtggtaagatttatgaattaa |
110 |
Q |
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| T |
29475196 |
taaaaattgtcattcagttctgacattgagttagatgtaaga-ttatgaattaa |
29475248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 204 - 264
Target Start/End: Original strand, 13063631 - 13063691
Alignment:
| Q |
204 |
gcaacaccctcaagcatgggcacatggtatttatggaattagaagccaagctatcttctca |
264 |
Q |
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|||| |||||||||||| |||| |||| ||| ||||||||||||||||||||| ||||| |
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| T |
13063631 |
gcaataccctcaagcattggcatttggtgtttcaggaattagaagccaagctatcatctca |
13063691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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