View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4754-Insertion-1 (Length: 930)
Name: NF4754-Insertion-1
Description: NF4754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4754-Insertion-1 |
 | |
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| [»] chr3 (8 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 744; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 744; E-Value: 0
Query Start/End: Original strand, 123 - 930
Target Start/End: Original strand, 53498102 - 53498907
Alignment:
| Q |
123 |
ttaaattcaatagcaaaaaatttgaataaggattataccttctgggagttctggctgatcaaagggactacagagagtctttgctggtcccatctcattc |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53498102 |
ttaaattcaatagcaaaaaatttgaataaggattataccttctgggagttctggctgatcaaagggactacagagagtctttgctggtcccatctcattc |
53498201 |
T |
|
| Q |
223 |
tctgtctttcttttgacatctaattccacatcctgaagcatatatagataaaaaacagtcaacaagaaagctcttttcaaataattgttcaaattgtata |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53498202 |
tctgtctttcttttgacatctaattccacatcctgaagcatatatagataaaaaacagtcaacaagaaagctcttttcaaataattgttcaaattgtata |
53498301 |
T |
|
| Q |
323 |
attatgtctcttggtannnnnnnnggtgagactcgttataaaaatgtaatgctaacaagttcttttgatatgatgaagaatatataaatcttgattctta |
422 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53498302 |
attatgtctcttggtattttttttggtgagactcgttataaaaatgtaatgctaacaagttcttttgatatgatgaagaatatataaatcttgattctta |
53498401 |
T |
|
| Q |
423 |
atttagttgtttataaatagtgctcatttaatttcgtctaattatatatattggtgtcgccctcctatatcttgaactaaagacgtctatgtatcagtcc |
522 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53498402 |
atttagttgtttataaatagtgctcatttaatttcatctaattatatatattggtgtcgccctcctatatcttgaactaaagacgtctatgtatcagtcc |
53498501 |
T |
|
| Q |
523 |
atgtgtcagttttttgttaatttagacttcaaaatagtgaaacacctagaattattataaggatttaattataactgcataagaaaatacacaatttcta |
622 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53498502 |
atgtgtcagttttttgttaatttagacttcaaaatagggaaacacctagaattattataaggatttaattataactgcataagaaaatacacaatttcta |
53498601 |
T |
|
| Q |
623 |
ccttctcatcacaccaaggagctaagatcatcattctttgattcaaagcttctttgaactcctcccacgtatgtatgacttgaatacattcatctcgttt |
722 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53498602 |
ccttctcatcacaccaaggagctaagatcatctttctttgattcaaagcttctttgaactcctcccacgtatgtatgacttgaatacattcatctcgttt |
53498701 |
T |
|
| Q |
723 |
ttgttttgcaacatcgaacatattttgttgaatattattgagggaactttttaatttcttcaaccaaatcagcattagcaatgtggaatctttgctccat |
822 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
53498702 |
ttgttttgcaacatcgaacatattttgttgaatattattga-ggaactttctaatttcttcaaccaaatcagcattagcaatgt-gaatctttgctccat |
53498799 |
T |
|
| Q |
823 |
tatcacgtcgaacaacacaaacctgtgcaaaattgaagtgatttatttggtgtctcattgaacatacagggtagaagccaaatggcatgtgagaatataa |
922 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
53498800 |
tatcacgtcgaacaacacaaacctgtgcaaaattgaagtgatttatttggtgtctcattgaacatacagggtagaagcaaaatgacatgtgagaatataa |
53498899 |
T |
|
| Q |
923 |
gagcaaca |
930 |
Q |
| |
|
|||||||| |
|
|
| T |
53498900 |
gagcaaca |
53498907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 516 - 930
Target Start/End: Original strand, 53490898 - 53491313
Alignment:
| Q |
516 |
tcagtccatgtgtcagttttttgttaatttagacttcaaaatagtgaaacacctagaattattataaggatttaatt-ataactgcataagaaaatacac |
614 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| ||||||| || |||||||||||||||||| || |||| || ||||||||| |||| |
|
|
| T |
53490898 |
tcagtccatgtgtcacttttttgttaatttagacttcaaaatagggaaacacatataattattataaggatttattttataattgtataagaaaacacac |
53490997 |
T |
|
| Q |
615 |
aatttctaccttctcatcacaccaaggagctaagatcatcattctttgattcaaagcttctttgaactcctcccacgtatgtatgacttgaatacattca |
714 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53490998 |
aatttctaccttctcatcacaccaaggagctaagatcatctttctttgattcaaagcttctttgaactcctcccacgtatgtatgacttgaatacattca |
53491097 |
T |
|
| Q |
715 |
tctcgtttttgttttgcaacatcgaacatattttgttgaatattattgagggaactttttaatttcttcaaccaaatcagcattagcaatgtggaatctt |
814 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
53491098 |
tctcgtttttgttttgcaacatcgaacatattttgttgaatgatattga-gcaactttttaatttcttcaaccaaatcagcattagcaatgt-ccatctt |
53491195 |
T |
|
| Q |
815 |
tgctccattatcacgtcgaacaacacaaacctgtgcaaaattgaagtgatttatttggtgtctcattgaacatacagggtagaagccaaatggc--atgt |
912 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| | |||||||| ||||| | |||| |
|
|
| T |
53491196 |
tgctccattatcacgtagaacaacacaaacctgtgaaaaattgaagtgatttatttggtatctcattgaacataaacagtagaagcaaaatgacatatgt |
53491295 |
T |
|
| Q |
913 |
gagaatataagagcaaca |
930 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
53491296 |
aagaatataagagcaaca |
53491313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 170; E-Value: 1e-90
Query Start/End: Original strand, 167 - 466
Target Start/End: Original strand, 53488747 - 53489035
Alignment:
| Q |
167 |
ggagttctggctgatcaaagggactacagagagtctttgctggtcccatctcattctctgtctttcttttgacatctaattccacatcctgaagcatata |
266 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||| ||||||||||| || |||||||||||||| |
|
|
| T |
53488747 |
ggagttctggctgatcaaagggacta--gagagtcttcgctgctcccatctcattctctgtcc--------acatctaattctacctcctgaagcatata |
53488836 |
T |
|
| Q |
267 |
tagataaaaaa-cagtcaacaagaaagctcttttcaaataattgttcaaattgtataattatgtctcttggtannnnnnnnggtgagactcgttataaaa |
365 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
53488837 |
tagataaaaaaacagttaacaagaaagctcttttcaaataattgttcaaattgtataattatgtctca--gtattttttttggtgagactcgttataaaa |
53488934 |
T |
|
| Q |
366 |
atgtaatgctaacaagttcttttgatatgatgaagaatatataaatcttgattcttaatttagttgtttataaatagtgctcatttaatttcgtctaatt |
465 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
53488935 |
atgtaatgctaacaagttcttttgatatgatgaagaatatataaatcttgattcttagtttagatgtttataaatagcgctcatttaattttatctaatt |
53489034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 169; E-Value: 4e-90
Query Start/End: Original strand, 591 - 859
Target Start/End: Original strand, 16069654 - 16069920
Alignment:
| Q |
591 |
ttataactgcataagaaaatacacaatttctaccttctcatcacaccaaggagctaagatcatcattctttgattcaaagcttctttgaactcctcccac |
690 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||| | |||||||||||||||||| ||||| ||||| |
|
|
| T |
16069654 |
ttataattgcataagaaaatactaaatttctaccttctcgtcacaccaaggacctaagatcatcttcctttgattcaaagcttctacaaactcatcccat |
16069753 |
T |
|
| Q |
691 |
gtatgtatgacttgaatacattcatctcgtttttgttttgcaacatcgaacatattttgttgaatattattgagggaactttttaatttcttcaaccaaa |
790 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||| | |||||||| ||||||||||| ||| |
|
|
| T |
16069754 |
gtatgtatgacttgaatacattcatctcgtttctgttttgcaacatccaacatattttgttgaacattattga-gcaacttttttatttcttcaactaaa |
16069852 |
T |
|
| Q |
791 |
tcagcattagcaatgtggaatctttgctccattatcacgtcgaacaacacaaacctgtgcaaaattgaa |
859 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
16069853 |
tcagcattagcaatgt-caatctttgcaccattatcacgtcgaacaacacaaacctatgcaaaattgaa |
16069920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 53497934 - 53498025
Alignment:
| Q |
8 |
cttacccgatttaaagcacttggtgcctgtaaaaccaacaccacacggtttaattaagcagcatcgatatcaattgtgagatacagagcagt |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53497934 |
cttacccgatttaaagcacttggtgcctgtaaaaccaacaccacacggtttaattaagcagcatcgatatcaattgtgagatacagagcagt |
53498025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 16069107 - 16069178
Alignment:
| Q |
157 |
ataccttctgggagttctggctgatcaaagggactacagagagtctttgctggtcccatctcattctctgtc |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
16069107 |
ataccttctgggagttctggctgatcaaagggactacagagaatctttgctgctcccatctcattctctgtc |
16069178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 347 - 472
Target Start/End: Original strand, 16069337 - 16069463
Alignment:
| Q |
347 |
ggtgagactcgttataaaaatgtaatgct--aacaagttcttttgatatgatgaagaatatataaatcttgattcttaatttagttgtttataaatagtg |
444 |
Q |
| |
|
|||||||| | ||||||||||||||| | |||||||||| |||||||| | |||||||||||||| ||||| ||||||| | ||||||||||||| |
|
|
| T |
16069337 |
ggtgagacactttataaaaatgtaatacccaaacaagttctattgatatggtattgaatatataaatcta-attctaaatttagatttttataaatagtg |
16069435 |
T |
|
| Q |
445 |
ctcatttaatttcgtctaattatatata |
472 |
Q |
| |
|
||||||| ||||| |||||||||||||| |
|
|
| T |
16069436 |
ctcattttatttcatctaattatatata |
16069463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 16068952 - 16068997
Alignment:
| Q |
8 |
cttacccgatttaaagcacttggtgcctgtaaaaccaacaccacac |
53 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
16068952 |
cttacccgatgcaaagcacttggtgcctgtaaaaccaacaacacac |
16068997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 5e-46; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 606 - 856
Target Start/End: Complemental strand, 45355786 - 45355538
Alignment:
| Q |
606 |
aaaatacacaatttctaccttctcatcacaccaaggagctaagatcatcattctttgattcaaagcttctttgaactcctcccacgtatgtatgacttga |
705 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||||||| || ||| |||||||||| || ||||| ||||| |||||||||| ||| |
|
|
| T |
45355786 |
aaaatacacaattcatacctcctcatcacaccaaggagctaagatcatctttttttcattcaaagctgctacaaactcatcccatgtatgtatgatctga |
45355687 |
T |
|
| Q |
706 |
atacattcatctcgtttttgttttgcaacatcgaacatattttgttgaatattattgagggaactttttaatttcttcaaccaaatcagcattagcaatg |
805 |
Q |
| |
|
|||||| |||||||||| |||||||| ||||| |||| ||| ||||||||||||| || | ||||| || ||||| ||||||||||| ||||| ||||| |
|
|
| T |
45355686 |
atacatgcatctcgtttgtgttttgcgacatcaaacaaattctgttgaatattatcga-gcaacttctttatttccacaaccaaatcatcattaccaatg |
45355588 |
T |
|
| Q |
806 |
tggaatctttgctccattatcacgtcgaacaacacaaacctgtgcaaaatt |
856 |
Q |
| |
|
| | ||||||||||| ||||||| |||||| ||| |||||||||||||| |
|
|
| T |
45355587 |
tcg-atctttgctccgctatcacgacgaacagcacggacctgtgcaaaatt |
45355538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 155 - 263
Target Start/End: Complemental strand, 45356454 - 45356346
Alignment:
| Q |
155 |
ttataccttctgggagttctggctgatcaaagggactacagagagtctttgctggtcccatctcattctctgtctttcttttgacatctaattccacatc |
254 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| || |||||||| | ||| ||||| || |||| || |||||||||| |||||| || |
|
|
| T |
45356454 |
ttataccttcggggagttctggctgatcaaagggactacaaagtgtctttgcagctcctgtctcaccctttgtccttgctttgacatctttttccacctc |
45356355 |
T |
|
| Q |
255 |
ctgaagcat |
263 |
Q |
| |
|
||||||||| |
|
|
| T |
45356354 |
ctgaagcat |
45356346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 155 - 263
Target Start/End: Original strand, 28941552 - 28941660
Alignment:
| Q |
155 |
ttataccttctgggagttctggctgatcaaagggactacagagagtctttgctggtcccatctcattctctgtctttcttttgacatctaattccacatc |
254 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||| |||||||| | ||| ||||| || |||| || |||||||||| |||||| || |
|
|
| T |
28941552 |
ttataccttcggggagttctggctgatcaaagggaatacagagtgtctttgcagctcctgtctcaccctttgtccttgctttgacatctttttccacctc |
28941651 |
T |
|
| Q |
255 |
ctgaagcat |
263 |
Q |
| |
|
|| |||||| |
|
|
| T |
28941652 |
ctaaagcat |
28941660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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