View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4754-Insertion-3 (Length: 598)

Name: NF4754-Insertion-3
Description: NF4754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4754-Insertion-3
NF4754-Insertion-3
[»] chr4 (13 HSPs)
chr4 (304-598)||(25792989-25793288)
chr4 (7-268)||(25792702-25792969)
chr4 (381-477)||(2996568-2996664)
chr4 (411-472)||(52259631-52259692)
chr4 (381-425)||(21043214-21043258)
chr4 (392-474)||(54426041-54426124)
chr4 (387-472)||(17822849-17822935)
chr4 (381-462)||(27123331-27123412)
chr4 (391-471)||(40831018-40831098)
chr4 (420-477)||(49202640-49202697)
chr4 (392-477)||(50800020-50800104)
chr4 (392-472)||(55414409-55414490)
chr4 (391-431)||(35726740-35726780)
[»] chr3 (20 HSPs)
chr3 (148-225)||(10135110-10135187)
chr3 (125-203)||(10073013-10073091)
chr3 (505-593)||(10101874-10101962)
chr3 (505-593)||(10133715-10133803)
chr3 (523-593)||(10212816-10212886)
chr3 (386-472)||(39980729-39980816)
chr3 (380-477)||(1217778-1217875)
chr3 (381-465)||(37273141-37273225)
chr3 (389-472)||(53789447-53789531)
chr3 (530-579)||(10136332-10136381)
chr3 (380-477)||(39602188-39602285)
chr3 (387-431)||(30923883-30923927)
chr3 (386-472)||(21367667-21367754)
chr3 (386-477)||(34382937-34383028)
chr3 (392-431)||(48300472-48300511)
chr3 (412-466)||(901930-901984)
chr3 (505-566)||(10074981-10075042)
chr3 (386-463)||(45541580-45541657)
chr3 (386-438)||(5391913-5391965)
chr3 (412-472)||(47132331-47132391)
[»] chr8 (14 HSPs)
chr8 (381-475)||(26473731-26473825)
chr8 (397-457)||(42597453-42597513)
chr8 (355-477)||(11415149-11415271)
chr8 (381-477)||(6509282-6509378)
chr8 (386-438)||(31875579-31875631)
chr8 (381-472)||(11569436-11569527)
chr8 (386-472)||(39551193-39551279)
chr8 (420-477)||(9956832-9956889)
chr8 (381-422)||(26499766-26499807)
chr8 (411-472)||(43504751-43504812)
chr8 (397-465)||(20672757-20672825)
chr8 (412-472)||(27028831-27028891)
chr8 (381-465)||(30259121-30259205)
chr8 (421-477)||(37461137-37461193)
[»] chr6 (10 HSPs)
chr6 (386-475)||(20368164-20368253)
chr6 (344-463)||(2455819-2455938)
chr6 (386-477)||(31624085-31624176)
chr6 (381-477)||(7148661-7148757)
chr6 (389-472)||(4246410-4246493)
chr6 (381-462)||(2460130-2460211)
chr6 (444-477)||(33828641-33828674)
chr6 (412-472)||(6536615-6536675)
chr6 (381-457)||(8420176-8420252)
chr6 (381-465)||(32171362-32171446)
[»] chr5 (10 HSPs)
chr5 (380-477)||(41957429-41957526)
chr5 (386-455)||(31688056-31688125)
chr5 (381-477)||(32172648-32172744)
chr5 (386-477)||(2568653-2568744)
chr5 (394-472)||(32703268-32703346)
chr5 (415-469)||(37954689-37954743)
chr5 (392-477)||(6587097-6587182)
chr5 (444-477)||(34245719-34245752)
chr5 (387-431)||(4273362-4273406)
chr5 (386-465)||(39105471-39105551)
[»] chr1 (25 HSPs)
chr1 (381-477)||(15515536-15515632)
chr1 (381-472)||(27140478-27140569)
chr1 (398-477)||(7218070-7218149)
chr1 (390-477)||(28689440-28689529)
chr1 (398-472)||(31294517-31294591)
chr1 (386-474)||(49938745-49938834)
chr1 (381-477)||(39270404-39270500)
chr1 (387-438)||(11695895-11695946)
chr1 (412-474)||(1510320-1510382)
chr1 (344-425)||(15581301-15581382)
chr1 (380-425)||(27145968-27146013)
chr1 (412-465)||(27820347-27820400)
chr1 (381-458)||(32515420-32515497)
chr1 (412-477)||(35179134-35179199)
chr1 (413-470)||(39603842-39603899)
chr1 (386-463)||(43338125-43338202)
chr1 (412-477)||(51695505-51695570)
chr1 (412-472)||(473164-473224)
chr1 (420-472)||(3234033-3234085)
chr1 (396-472)||(12564493-12564569)
chr1 (413-477)||(25944427-25944491)
chr1 (420-472)||(26779943-26779995)
chr1 (420-468)||(29270299-29270347)
chr1 (386-458)||(35925704-35925776)
chr1 (412-472)||(42174855-42174915)
[»] chr2 (17 HSPs)
chr2 (343-477)||(11513893-11514025)
chr2 (389-477)||(10563545-10563633)
chr2 (386-472)||(43279512-43279599)
chr2 (379-472)||(41851141-41851234)
chr2 (386-477)||(18066123-18066215)
chr2 (412-472)||(26202028-26202088)
chr2 (401-477)||(39983337-39983413)
chr2 (412-474)||(12289795-12289857)
chr2 (392-477)||(34102013-34102098)
chr2 (386-463)||(34652020-34652097)
chr2 (381-477)||(1742011-1742107)
chr2 (449-477)||(7751488-7751516)
chr2 (421-477)||(9477947-9478003)
chr2 (387-423)||(15377815-15377851)
chr2 (420-472)||(20952355-20952407)
chr2 (386-438)||(32106783-32106835)
chr2 (412-472)||(32592586-32592646)
[»] chr7 (9 HSPs)
chr7 (386-431)||(29768623-29768668)
chr7 (422-472)||(19022605-19022655)
chr7 (420-477)||(44821954-44822011)
chr7 (398-463)||(45078287-45078352)
chr7 (420-477)||(45790443-45790500)
chr7 (420-473)||(47130803-47130856)
chr7 (449-477)||(32210262-32210290)
chr7 (362-430)||(44686972-44687040)
chr7 (412-472)||(48470044-48470104)
[»] scaffold0045 (1 HSPs)
scaffold0045 (504-561)||(84690-84747)


Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 304 - 598
Target Start/End: Original strand, 25792989 - 25793288
Alignment:
Q  304 gtgtccatag-atagattaagggcttgtttaggtcagattattatctacgggcataagaatttgttagattgctttaaagaggttatggaaacagcttat 402  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  25792989 gtgtccataggatagattaagggcttgttttggtcagattattatctacgggcataagaatttgttagattgctttaaagaggttatggaaacaggttat 25793088  T
Q  403 gacacgtctataagctattttcaacttatgttcataggtta----tccatgatagcttataaaaacaacttataacttagtgacgattatactttttctt 498  Q
    |||||||| ||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25793089 gacacgtccataagctattttcaacttatgttcataggttagatatccatgatagcttataaaaacaacttataacttaatgacgattatactttttctt 25793188  T
Q  499 tagggggttttctggtaagtaggagtgaaacaatatagctattttcatattaataaacttattcatgtcatgaacaagccttcatatatttgactggata 598  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25793189 tagggggttttctggtaagtagtagtgaaacaatatagctattgtcatattaataaacttattcatgtcatgaacaagccttcatatatttgactggata 25793288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 7 - 268
Target Start/End: Original strand, 25792702 - 25792969
Alignment:
Q  7 agtattaaaaatgaaagtttgtgtttgatc-------gctaaaaaattatctccctgtaacaaactaactactaacattagcttatcaaaaacgaaaagt 99  Q
    ||||||||||||||||||||||||||||||       ||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||    
T  25792702 agtattaaaaatgaaagtttgtgtttgatctctgctcgctaacaaattatctccctgtaacaaactaactactaacattagcttatcaaaa-caaaaggt 25792800  T
Q  100 atacattccttttctaattgtaagatttttggttgtatgatcaggtaatttttgactttcgtttcttggcactccttgctgttggaggttccttggctgg 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25792801 atacattccttttctaattgtaagatttttggttgtatgatcaggtaatttttgactttcgtttcttggcactccttgctgttggaggttccttggctgg 25792900  T
Q  200 ctcactcctctgctttctaaatgtatagtttctcaacacctttagtaaatgagaagcaatgtgctataa 268  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25792901 ctcactcctctgctttctaaatgtatagtttctcaacacctttagtaaatgagaagcaatgtgctataa 25792969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 381 - 477
Target Start/End: Complemental strand, 2996664 - 2996568
Alignment:
Q  381 agaggttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 477  Q
    |||| ||||| ||||| ||||||||| ||| ||||||| |||||||||||| |||||| | | |||| |||||||||| ||||||||||||||||||    
T  2996664 agagcttatgaaaacaacttatgacatgtccataagcttttttcaacttattttcatacgctctccaagatagcttatgaaaacaacttataactta 2996568  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 411 - 472
Target Start/End: Complemental strand, 52259692 - 52259631
Alignment:
Q  411 tataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 472  Q
    ||||||||||||||||||||| |||||| | | |||  ||||||||||||||||| ||||||    
T  52259692 tataagctattttcaacttattttcataagctctcccagatagcttataaaaacagcttata 52259631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 21043214 - 21043258
Alignment:
Q  381 agaggttatggaaacagcttatgacacgtctataagctattttca 425  Q
    |||||||||||||||||||||||||||||  ||||||| ||||||    
T  21043214 agaggttatggaaacagcttatgacacgttcataagctgttttca 21043258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 474
Target Start/End: Complemental strand, 54426124 - 54426041
Alignment:
Q  392 aaacagcttatgacacgtct-ataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataac 474  Q
    |||||||||||||||  | | ||||||| ||||||| |||| |||||| ||| ||||  |||| ||||||||||||||||||||    
T  54426124 aaacagcttatgacaattttcataagcttttttcaagttattttcataagttctccaatatagattataaaaacaacttataac 54426041  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 472
Target Start/End: Original strand, 17822849 - 17822935
Alignment:
Q  387 tatggaaacagcttatgacacgtct-ataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 472  Q
    |||| |||||||||||||||  | | ||||||| |||| | ||||| |||||| ||| |||| |||||||||| |||||||||||||    
T  17822849 tatgaaaacagcttatgacatttttcataagctttttttagcttattttcataagttctccaagatagcttatgaaaacaacttata 17822935  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 462
Target Start/End: Original strand, 27123331 - 27123412
Alignment:
Q  381 agaggttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaa 462  Q
    |||| ||||||||||| ||||||||| |||| |||| | |||||||||||| | |||| | | ||||| |||||||| ||||    
T  27123331 agagcttatggaaacaacttatgacatgtctttaagttgttttcaacttatttccataagctctccataatagcttacaaaa 27123412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 471
Target Start/End: Original strand, 40831018 - 40831098
Alignment:
Q  391 gaaacagcttatgaca-cgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttat 471  Q
    ||||||||||| |||| | | |||||||| |||||||||||| |||||| ||| ||||   |||||||||||||||||||||    
T  40831018 gaaacagcttacgacaacttttataagcttttttcaacttat-ttcataagttctccaatctagcttataaaaacaacttat 40831098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 477
Target Start/End: Complemental strand, 49202697 - 49202640
Alignment:
Q  420 ttttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 477  Q
    |||||||||||| |||||  |||||||| |||||||||  ||||||||||||| ||||    
T  49202697 ttttcaacttattttcattagttatccaagatagcttacgaaaacaacttatagctta 49202640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 477
Target Start/End: Original strand, 50800020 - 50800104
Alignment:
Q  392 aaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 477  Q
    ||||| ||||||||| ||||||||||| |||||| ||||| |||  | ||| ||||||||||||||  |||||| |||||| ||||    
T  50800020 aaacaacttatgacatgtctataagctgttttcagcttat-ttccaaagttctccatgatagcttaagaaaacagcttatagctta 50800104  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 472
Target Start/End: Original strand, 55414409 - 55414490
Alignment:
Q  392 aaacagcttatgacacgtct-ataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 472  Q
    |||||||||||||||  | | ||||||| |||||||||||| |||||| ||| |||| |||| ||||| ||||||| |||||    
T  55414409 aaacagcttatgacatttttcataagcttttttcaacttattttcataagttctccaagataacttatgaaaacaatttata 55414490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 391 - 431
Target Start/End: Original strand, 35726740 - 35726780
Alignment:
Q  391 gaaacagcttatgacacgtctataagctattttcaacttat 431  Q
    |||| ||||||||||| ||| ||||||||||||||||||||    
T  35726740 gaaagagcttatgacatgtccataagctattttcaacttat 35726780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 7e-29; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 148 - 225
Target Start/End: Original strand, 10135110 - 10135187
Alignment:
Q  148 tttttgactttcgtttcttggcactccttgctgttggaggttccttggctggctcactcctctgctttctaaatgtat 225  Q
    |||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10135110 ttttcgactttcgtttctttgcattccttgctgttggaggttccttggctggctcactcctctgctttctaaatgtat 10135187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 125 - 203
Target Start/End: Original strand, 10073013 - 10073091
Alignment:
Q  125 tttttggttgtatgatcaggtaatttttgactttcgtttcttggcactccttgctgttggaggttccttggctggctca 203  Q
    |||||| |||| |||||||||  |||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  10073013 tttttgattgtgtgatcaggtcgttttcgactttcgtttctttgcactccttgctgttggaggttccttgactggctca 10073091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 505 - 593
Target Start/End: Original strand, 10101874 - 10101962
Alignment:
Q  505 gttttctggtaagtaggagtgaaacaatatagctattttcatattaataaacttattcatgtcatgaacaagccttcatatatttgact 593  Q
    |||||||| ||||||   |||||| |||| ||||| | |||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  10101874 gttttctgataagtattggtgaaataatagagctagtgtcatattaataaacttattcatgtcatgaataagcctacatatatttgact 10101962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 505 - 593
Target Start/End: Original strand, 10133715 - 10133803
Alignment:
Q  505 gttttctggtaagtaggagtgaaacaatatagctattttcatattaataaacttattcatgtcatgaacaagccttcatatatttgact 593  Q
    |||||||| ||||||   |||||| |||| ||||| | |||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  10133715 gttttctgataagtattggtgaaataatagagctagtgtcatattaataaacttattcatgtcatgaataagcctacatatatttgact 10133803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 523 - 593
Target Start/End: Original strand, 10212816 - 10212886
Alignment:
Q  523 gtgaaacaatatagctattttcatattaataaacttattcatgtcatgaacaagccttcatatatttgact 593  Q
    |||||| |||| ||||| | |||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  10212816 gtgaaataatagagctagtgtcatattaataaacttattcatgtcatgaataagcctacatatatttgact 10212886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 386 - 472
Target Start/End: Complemental strand, 39980816 - 39980729
Alignment:
Q  386 ttatggaaacagcttatgacacgtct-ataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 472  Q
    ||||| ||||||||||||||  || | ||||||| |||||||||||| |||||| ||| ||||  |||||||||||||||||||||||    
T  39980816 ttatgaaaacagcttatgactggtttcataagcttttttcaacttattttcataagttctccaatatagcttataaaaacaacttata 39980729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 380 - 477
Target Start/End: Original strand, 1217778 - 1217875
Alignment:
Q  380 aagaggttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 477  Q
    ||||| ||| ||||||||||||||||| ||| ||||| | |||||| ||||  |||||| ||| || | |||||||||| |||||| |||||||||||    
T  1217778 aagagcttacggaaacagcttatgacatgtccataagttgttttcatcttactttcataagttctcaaggatagcttatgaaaacagcttataactta 1217875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 465
Target Start/End: Complemental strand, 37273225 - 37273141
Alignment:
Q  381 agaggttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaaca 465  Q
    |||| ||||||||||| ||||||||| ||| ||||| | |||||||||||| | |||| ||| |||| |||||||||| ||||||    
T  37273225 agagcttatggaaacaacttatgacatgtccataagttgttttcaacttatttccataagttctccaagatagcttatgaaaaca 37273141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 472
Target Start/End: Original strand, 53789447 - 53789531
Alignment:
Q  389 tggaaacagcttatgacacgtct-ataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 472  Q
    ||||||||||||||||||| | | ||||||| |||||| ||||  |||||| ||| ||||||||||||||| | |||||||||||    
T  53789447 tggaaacagcttatgacacttttcataagcttttttcagcttaatttcataagttctccatgatagcttatgataacaacttata 53789531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 530 - 579
Target Start/End: Original strand, 10136332 - 10136381
Alignment:
Q  530 aatatagctattttcatattaataaacttattcatgtcatgaacaagcct 579  Q
    |||| ||||| | |||||||||||||||||||||||||||||| ||||||    
T  10136332 aatacagctagtgtcatattaataaacttattcatgtcatgaataagcct 10136381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 380 - 477
Target Start/End: Original strand, 39602188 - 39602285
Alignment:
Q  380 aagaggttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 477  Q
    ||||| ||||| | ||||||||||||| ||  ||||  | |||||||||||| |||||| ||| || | |||||||||| |||||| |||||||||||    
T  39602188 aagagcttatgaagacagcttatgacatgttcataaattgttttcaacttattttcataagttctcaaagatagcttatgaaaacagcttataactta 39602285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 431
Target Start/End: Original strand, 30923883 - 30923927
Alignment:
Q  387 tatggaaacagcttatgacacgtctataagctattttcaacttat 431  Q
    |||||||||||||||||||| ||||||||||| |||||| |||||    
T  30923883 tatggaaacagcttatgacatgtctataagctgttttcagcttat 30923927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 472
Target Start/End: Complemental strand, 21367754 - 21367667
Alignment:
Q  386 ttatggaaacagcttatgacac-gtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 472  Q
    ||||| |||||||||||||||  ||  | ||||| |||||| ||||| |||||| ||| |||| |||||||||| |||||||||||||    
T  21367754 ttatgaaaacagcttatgacattgttcacaagctgttttcagcttattttcataagttctccaagatagcttatgaaaacaacttata 21367667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 477
Target Start/End: Complemental strand, 34383028 - 34382937
Alignment:
Q  386 ttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 477  Q
    |||||||||||| |||||| | ||||||||| | |||||| ||||| ||| || | | | || |||||||||| |||| |||||||||||||    
T  34383028 ttatggaaacagattatgatatgtctataagttgttttcatcttattttcttaagcttttcaggatagcttatgaaaagaacttataactta 34382937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 431
Target Start/End: Original strand, 48300472 - 48300511
Alignment:
Q  392 aaacagcttatgacacgtctataagctattttcaacttat 431  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  48300472 aaacagcttatgacatgtgtataagctattttcaacttat 48300511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 412 - 466
Target Start/End: Complemental strand, 901984 - 901930
Alignment:
Q  412 ataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaa 466  Q
    ||||||| |||||||||||| |||||| ||| ||||  |||||||||||||||||    
T  901984 ataagcttttttcaacttattttcataagttctccaatatagcttataaaaacaa 901930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 505 - 566
Target Start/End: Original strand, 10074981 - 10075042
Alignment:
Q  505 gttttctggtaagtaggagtgaaacaatatagctattttcatattaataaacttattcatgt 566  Q
    |||||||| ||||||   |||||| |||| ||||| | ||||||||||||||||||||||||    
T  10074981 gttttctgataagtattggtgaaataatagagctagtgtcatattaataaacttattcatgt 10075042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 463
Target Start/End: Complemental strand, 45541657 - 45541580
Alignment:
Q  386 ttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaa 463  Q
    ||||| ||||||||||||||| ||  ||||||| ||||||  ||||  ||||| |||||||| |||||||||| ||||    
T  45541657 ttatgaaaacagcttatgacatgttcataagctgttttcaggttattctcataagttatccaagatagcttatgaaaa 45541580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 386 - 438
Target Start/End: Complemental strand, 5391965 - 5391913
Alignment:
Q  386 ttatggaaacagcttatgacacgtctataagctattttcaacttatgttcata 438  Q
    ||||| ||||||||||||||| ||  ||||||| |||||||||||| ||||||    
T  5391965 ttatgaaaacagcttatgacatgttcataagctgttttcaacttattttcata 5391913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 412 - 472
Target Start/End: Complemental strand, 47132391 - 47132331
Alignment:
Q  412 ataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 472  Q
    ||||||| |||||||||||| ||||||  || ||||  |||||||||||||||||| ||||    
T  47132391 ataagcttttttcaacttattttcataacttctccaatatagcttataaaaacaacctata 47132331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 381 - 475
Target Start/End: Original strand, 26473731 - 26473825
Alignment:
Q  381 agaggttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataact 475  Q
    |||| ||||| ||||||||||||||| |||||||||||| ||| ||||||| |||||| | | || | |||||||||| ||||||||||| ||||    
T  26473731 agagcttatgaaaacagcttatgacatgtctataagctagttttaacttattttcataagctctctaggatagcttatgaaaacaacttacaact 26473825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 397 - 457
Target Start/End: Complemental strand, 42597513 - 42597453
Alignment:
Q  397 gcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagctta 457  Q
    |||||||||| ||||||||||| |||||||||||| | |||| |||||||| |||||||||    
T  42597513 gcttatgacatgtctataagctgttttcaacttatttccataagttatccaagatagctta 42597453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 477
Target Start/End: Complemental strand, 11415271 - 11415149
Alignment:
Q  355 cataagaatttgttagattgctttaaagaggttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagc 454  Q
    |||||| | |||| |||||| |||| |||| ||||||||||||||||| ||| ||| |||||||||| ||| ||||| |||| |   | || | ||||||    
T  11415271 cataagtacttgtgagattgttttagagagtttatggaaacagcttataacatgtccataagctattctcagcttattttcacaaactctctaggatagc 11415172  T
Q  455 ttataaaaacaacttataactta 477  Q
    |||| |||||| | |||||||||    
T  11415171 ttatgaaaacagcgtataactta 11415149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 477
Target Start/End: Original strand, 6509282 - 6509378
Alignment:
Q  381 agaggttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 477  Q
    |||| |||| |||||||||||||||| | |||||| ||||||||| ||||| |  ||| | | |||| |||||||||| |||||| |||||| ||||    
T  6509282 agagcttatagaaacagcttatgacatgcctataaactattttcaccttatttcaataagctctccaggatagcttatgaaaacagcttatagctta 6509378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 438
Target Start/End: Original strand, 31875579 - 31875631
Alignment:
Q  386 ttatggaaacagcttatgacacgtctataagctattttcaacttatgttcata 438  Q
    ||||||||||| ||||||||| ||| |||||| ||||||||||||| ||||||    
T  31875579 ttatggaaacaacttatgacatgtccataagccattttcaacttattttcata 31875631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 472
Target Start/End: Original strand, 11569436 - 11569527
Alignment:
Q  381 agaggttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 472  Q
    |||| ||||||||||||||||||||| ||  ||||| | |||||| ||||| |||| |   | ||||||||||||||| |||||| ||||||    
T  11569436 agagcttatggaaacagcttatgacatgtacataagttgttttcagcttattttcaaaatctctccatgatagcttatgaaaacagcttata 11569527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 472
Target Start/End: Original strand, 39551193 - 39551279
Alignment:
Q  386 ttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 472  Q
    ||||||||||| ||||||||| ||| | ||||| |||| ||||||| || ||| | | |||| || ||||||| |||||||||||||    
T  39551193 ttatggaaacaacttatgacatgtccaaaagctgtttttaacttatttttataagctctccaggaaagcttatgaaaacaacttata 39551279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 477
Target Start/End: Original strand, 9956832 - 9956889
Alignment:
Q  420 ttttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 477  Q
    |||||| ||||| |||||| ||| |||| ||||| |||| ||||||||||||||||||    
T  9956832 ttttcagcttattttcataagttctccaagatagattatgaaaacaacttataactta 9956889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 422
Target Start/End: Complemental strand, 26499807 - 26499766
Alignment:
Q  381 agaggttatggaaacagcttatgacacgtctataagctattt 422  Q
    |||||||||| |||||||||||| |||||||||| |||||||    
T  26499807 agaggttatgaaaacagcttatggcacgtctataggctattt 26499766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 472
Target Start/End: Complemental strand, 43504812 - 43504751
Alignment:
Q  411 tataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 472  Q
    |||||||| |||||| ||||| | |||| ||| |||| ||||||||||||||||| ||||||    
T  43504812 tataagctgttttcagcttatttccataagttctccaagatagcttataaaaacatcttata 43504751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 397 - 465
Target Start/End: Complemental strand, 20672825 - 20672757
Alignment:
Q  397 gcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaaca 465  Q
    |||||||||| ||  ||||||| |||||| ||||| |||||| | | |||| |||||||||||||||||    
T  20672825 gcttatgacatgttcataagctgttttcagcttattttcataagctctccaggatagcttataaaaaca 20672757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 412 - 472
Target Start/End: Complemental strand, 27028891 - 27028831
Alignment:
Q  412 ataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 472  Q
    |||||||||||||| ||||| |||||| | | |||| |||||||||| |||||| ||||||    
T  27028891 ataagctattttcagcttattttcataagctctccaagatagcttatgaaaacagcttata 27028831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 465
Target Start/End: Complemental strand, 30259205 - 30259121
Alignment:
Q  381 agaggttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaaca 465  Q
    |||| ||||||||||||||||||| | ||||||||| | ||||||  |||| | |||| ||| |||| ||||  |||||||||||    
T  30259205 agagcttatggaaacagcttatgatatgtctataagttgttttcagtttatttccataagttctccaagataatttataaaaaca 30259121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 421 - 477
Target Start/End: Complemental strand, 37461193 - 37461137
Alignment:
Q  421 tttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 477  Q
    ||||||||||| || ||| ||||||| ||||||||||| |||||||| |||| ||||    
T  37461193 tttcaacttatttttataagttatccgtgatagcttatgaaaacaacatatagctta 37461137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 386 - 475
Target Start/End: Original strand, 20368164 - 20368253
Alignment:
Q  386 ttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataact 475  Q
    ||||| ||||| ||||||||| ||  |||||||| ||||||||||| |||||| ||| |||| || ||||||| ||||||||||||||||    
T  20368164 ttatgaaaacaacttatgacatgttcataagctagtttcaacttattttcataagttctccaagaaagcttatgaaaacaacttataact 20368253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 344 - 463
Target Start/End: Complemental strand, 2455938 - 2455819
Alignment:
Q  344 ttatctacgggcataagaatttgttagattgctttaaagaggttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggtta 443  Q
    |||||||| |||||||| | |||  |||||| ||  ||||| ||||||||||| ||||||||| | | |||| ||||||||||||||| | |||| | |     
T  2455938 ttatctaccggcataagcacttgcgagattgtttagaagagcttatggaaacaacttatgacatgcccataaactattttcaacttatttccataagctc 2455839  T
Q  444 tccatgatagcttataaaaa 463  Q
    |||| |||||||||| ||||    
T  2455838 tccaagatagcttatgaaaa 2455819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 386 - 477
Target Start/End: Complemental strand, 31624176 - 31624085
Alignment:
Q  386 ttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 477  Q
    ||||| ||||||||||||||| ||  ||||||| |||||||||||| ||||||  || |||| |||||| ||| |||||| |||||| ||||    
T  31624176 ttatgaaaacagcttatgacatgttcataagctgttttcaacttattttcataatttctccaagatagcctatgaaaacagcttatagctta 31624085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 477
Target Start/End: Complemental strand, 7148757 - 7148661
Alignment:
Q  381 agaggttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 477  Q
    |||| ||| ||||||| ||||||||  ||| |||||||||||||||||||| |||||| | | |||| | |||||||| |||| | |||||| ||||    
T  7148757 agagcttacggaaacaacttatgacttgtccataagctattttcaacttattttcataagctctccagggtagcttattaaaataccttatagctta 7148661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 472
Target Start/End: Complemental strand, 4246493 - 4246410
Alignment:
Q  389 tggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 472  Q
    |||||||| || |||||| ||| ||||||| |||||||||||| || ||| | | ||||| ||||||||| |||||| ||||||    
T  4246493 tggaaacaactcatgacatgtccataagctgttttcaacttatttttatatgctctccataatagcttatgaaaacagcttata 4246410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 462
Target Start/End: Original strand, 2460130 - 2460211
Alignment:
Q  381 agaggttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaa 462  Q
    |||| ||||||||||| ||||||||| |||| |||| | |||||||||||| | |||| | | ||||| |||||||| ||||    
T  2460130 agagcttatggaaacaacttatgacatgtctttaagttgttttcaacttatttccataagctctccataatagcttacaaaa 2460211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 477
Target Start/End: Complemental strand, 33828674 - 33828641
Alignment:
Q  444 tccatgatagcttataaaaacaacttataactta 477  Q
    ||||||||||||||| ||||||||||||||||||    
T  33828674 tccatgatagcttattaaaacaacttataactta 33828641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 412 - 472
Target Start/End: Complemental strand, 6536675 - 6536615
Alignment:
Q  412 ataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 472  Q
    ||||||| |||||||||||| ||||||  || ||||  ||||||| |||||||||||||||    
T  6536675 ataagcttttttcaacttattttcataaattctccaatatagcttctaaaaacaacttata 6536615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 457
Target Start/End: Original strand, 8420176 - 8420252
Alignment:
Q  381 agaggttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagctta 457  Q
    |||| |||| |||| ||||||||||| ||| | |||||||||||||||||| | |||| | | ||||| ||||||||    
T  8420176 agagcttatagaaatagcttatgacatgtccacaagctattttcaacttatttccataagctctccattatagctta 8420252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 465
Target Start/End: Original strand, 32171362 - 32171446
Alignment:
Q  381 agaggttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaaca 465  Q
    |||| ||||| ||||||||||||||| ||| | |||||||||||| ||||| | |||| | |||||| |||| || || ||||||    
T  32171362 agagcttatgaaaacagcttatgacaagtccagaagctattttcagcttatttccataagctatccaggataactaatgaaaaca 32171446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 380 - 477
Target Start/End: Original strand, 41957429 - 41957526
Alignment:
Q  380 aagaggttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 477  Q
    ||||| ||| ||||||||||||||||| ||| ||||| | |||||| ||||| |||||| ||| || | |||||||||| |||||| |||||||||||    
T  41957429 aagagcttacggaaacagcttatgacatgtccataagttgttttcatcttattttcataagttctcaaggatagcttatgaaaacagcttataactta 41957526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 386 - 455
Target Start/End: Complemental strand, 31688125 - 31688056
Alignment:
Q  386 ttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagct 455  Q
    |||| |||||||||||||||  |||||||||||||||||||||||| |||||| | | | ||||||||||    
T  31688125 ttatagaaacagcttatgacttgtctataagctattttcaacttattttcataagctctacatgatagct 31688056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 477
Target Start/End: Complemental strand, 32172744 - 32172648
Alignment:
Q  381 agaggttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 477  Q
    |||| ||||||||||| ||||||||| ||| |||||| ||||||| ||||| | |||  ||| | ||||||||||||| |||||| |||||| ||||    
T  32172744 agagcttatggaaacaacttatgacatgtccataagccattttcagcttatttccattagttcttcatgatagcttatgaaaacagcttatagctta 32172648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 477
Target Start/End: Complemental strand, 2568744 - 2568653
Alignment:
Q  386 ttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 477  Q
    ||||| |||||||||||||||  |  ||||| |||||| | ||||| |||||  | | ||||||||||||||| ||||||||||||| ||||    
T  2568744 ttatgaaaacagcttatgacatattcataagttatttttagcttattttcattagctctccatgatagcttatgaaaacaacttatagctta 2568653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 394 - 472
Target Start/End: Original strand, 32703268 - 32703346
Alignment:
Q  394 acagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 472  Q
    |||||||||||||||| ||||| || |||||| ||||| || |||  || |||  |||||||||| |||||||||||||    
T  32703268 acagcttatgacacgtttataaactgttttcagcttatttttataaattctcctagatagcttatgaaaacaacttata 32703346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 415 - 469
Target Start/End: Complemental strand, 37954743 - 37954689
Alignment:
Q  415 agctattttcaacttatgttcataggttatccatgatagcttataaaaacaactt 469  Q
    |||| |||||||||||| |||||| ||| ||||  ||||||||||||||||||||    
T  37954743 agcttttttcaacttattttcatatgttctccaatatagcttataaaaacaactt 37954689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 477
Target Start/End: Original strand, 6587097 - 6587182
Alignment:
Q  392 aaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 477  Q
    ||||||||||||||| ||  ||||||| ||| || ||||| |||| | ||| ||||  ||||||||| ||||||||||||| ||||    
T  6587097 aaacagcttatgacaggttcataagctgtttacagcttattttcacaagttctccactatagcttatgaaaacaacttatagctta 6587182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 477
Target Start/End: Complemental strand, 34245752 - 34245719
Alignment:
Q  444 tccatgatagcttataaaaacaacttataactta 477  Q
    ||||||||||||||||||||||||||||| ||||    
T  34245752 tccatgatagcttataaaaacaacttatagctta 34245719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 431
Target Start/End: Original strand, 4273362 - 4273406
Alignment:
Q  387 tatggaaacagcttatgacacgtctataagctattttcaacttat 431  Q
    |||||||||||||||||||  ||||||||| | ||||||||||||    
T  4273362 tatggaaacagcttatgacttgtctataagttgttttcaacttat 4273406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 386 - 465
Target Start/End: Complemental strand, 39105551 - 39105471
Alignment:
Q  386 ttatggaaacagcttatgacac-gtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaaca 465  Q
    ||||| |||||||||||||||  ||  |||||||||||| | ||||| |||||| ||| |||| |||||||||| ||||||    
T  39105551 ttatgaaaacagcttatgacattgttcataagctatttttagcttattttcataagttctccaagatagcttatgaaaaca 39105471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 381 - 477
Target Start/End: Complemental strand, 15515632 - 15515536
Alignment:
Q  381 agaggttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 477  Q
    |||| ||||| ||||| ||||||||| ||| ||| ||||||||||| |||| | |||| | ||||||||||| ||||| ||||||||||||| ||||    
T  15515632 agagtttatgaaaacaacttatgacatgtcaatacgctattttcaatttatttccataagctatccatgataacttatgaaaacaacttatagctta 15515536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 381 - 472
Target Start/End: Complemental strand, 27140569 - 27140478
Alignment:
Q  381 agaggttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 472  Q
    |||| ||| ||||||||||||||||| ||| ||||| | |||||| ||||| | |||| | | |||||||||||||||||||||| ||||||    
T  27140569 agagtttaaggaaacagcttatgacatgtccataagttgttttcagcttatttgcataagctctccatgatagcttataaaaacagcttata 27140478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 398 - 477
Target Start/End: Original strand, 7218070 - 7218149
Alignment:
Q  398 cttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 477  Q
    ||||||||||||  | ||||| |||||||||||| |||||| ||| |||| ||||| |||| ||||||||||||| ||||    
T  7218070 cttatgacacgttcacaagctgttttcaacttattttcataagttctccaggataggttatgaaaacaacttatagctta 7218149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 390 - 477
Target Start/End: Original strand, 28689440 - 28689529
Alignment:
Q  390 ggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttata--aaaacaacttataactta 477  Q
    ||||||||||||||||| ||| ||||| | |||||| ||||| |||||| | | |||| |||||||||||  ||||||||||||| ||||    
T  28689440 ggaaacagcttatgacatgtccataagttgttttcagcttattttcataagctttccaagatagcttatatgaaaacaacttatagctta 28689529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 398 - 472
Target Start/End: Original strand, 31294517 - 31294591
Alignment:
Q  398 cttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 472  Q
    |||||||||| || ||||||| |||||||||||| |||||| | | || ||||||| ||| ||||||||||||||    
T  31294517 cttatgacacatccataagctcttttcaacttattttcataagctctctatgatagtttacaaaaacaacttata 31294591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 386 - 474
Target Start/End: Complemental strand, 49938834 - 49938745
Alignment:
Q  386 ttatggaaacagcttatgacacgtct-ataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataac 474  Q
    ||||| |||||||||||||||  | | | ||||| |||||||||||| |||||| ||| || |  |||||||||||||||||||||||||    
T  49938834 ttatgaaaacagcttatgacaattttcaaaagcttttttcaacttattttcataagttctctaatatagcttataaaaacaacttataac 49938745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 477
Target Start/End: Original strand, 39270404 - 39270500
Alignment:
Q  381 agaggttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 477  Q
    |||| ||||| ||||||||| || || ||| ||||||| |||||||||||| |||||| | | || ||| |||||||| |||||| |||||| ||||    
T  39270404 agagcttatgaaaacagcttttggcatgtccataagctgttttcaacttattttcatatgctctctatggtagcttatgaaaacagcttatatctta 39270500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 438
Target Start/End: Complemental strand, 11695946 - 11695895
Alignment:
Q  387 tatggaaacagcttatgacacgtctataagctattttcaacttatgttcata 438  Q
    ||||||||||| |||||||| ||| ||||||| |||||||||||| ||||||    
T  11695946 tatggaaacagtttatgacatgtccataagctgttttcaacttattttcata 11695895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 412 - 474
Target Start/End: Original strand, 1510320 - 1510382
Alignment:
Q  412 ataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataac 474  Q
    ||||||| |||||||||||| ||| || ||| ||||  | |||||||||||||||||||||||    
T  1510320 ataagcttttttcaacttattttcgtaagttctccaatagagcttataaaaacaacttataac 1510382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 425
Target Start/End: Complemental strand, 15581382 - 15581301
Alignment:
Q  344 ttatctacgggcataagaatttgttagattgctttaaagaggttatggaaacagcttatgacacgtctataagctattttca 425  Q
    |||||||| | |||||| | |||| |||||| ||  ||||| | ||||||||| ||||||||| ||||||||||| ||||||    
T  15581382 ttatctactgacataagcacttgtgagattgtttggaagagctaatggaaacaacttatgacatgtctataagctgttttca 15581301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 425
Target Start/End: Complemental strand, 27146013 - 27145968
Alignment:
Q  380 aagaggttatggaaacagcttatgacacgtctataagctattttca 425  Q
    ||||| ||||||||||||||||||||| ||| ||||| ||||||||    
T  27146013 aagagcttatggaaacagcttatgacatgtccataagttattttca 27145968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 465
Target Start/End: Original strand, 27820347 - 27820400
Alignment:
Q  412 ataagctattttcaacttatgttcataggttatccatgatagcttataaaaaca 465  Q
    |||||||||||||| ||||| ||||||  || |||| |||||||||||||||||    
T  27820347 ataagctattttcagcttattttcataaattctccaagatagcttataaaaaca 27820400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 458
Target Start/End: Original strand, 32515420 - 32515497
Alignment:
Q  381 agaggttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttat 458  Q
    |||| ||||||||||||| ||||||| ||| ||||| | |||||||||||| |  ||| | | |||||||||||||||    
T  32515420 agagcttatggaaacagcgtatgacatgtcaataagttgttttcaacttatatctataagctctccatgatagcttat 32515497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 477
Target Start/End: Complemental strand, 35179199 - 35179134
Alignment:
Q  412 ataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 477  Q
    ||||||| |||||| ||||| |||||| ||| ||||| ||| ||||| |||||| |||||||||||    
T  35179199 ataagctgttttcagcttattttcataagttctccataataacttatgaaaacagcttataactta 35179134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 470
Target Start/End: Original strand, 39603842 - 39603899
Alignment:
Q  413 taagctattttcaacttatgttcataggttatccatgatagcttataaaaacaactta 470  Q
    ||||||||||||| ||||| |||||| | ||||||  ||||| |||||||||||||||    
T  39603842 taagctattttcagcttattttcataagctatccaaaatagcatataaaaacaactta 39603899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 463
Target Start/End: Complemental strand, 43338202 - 43338125
Alignment:
Q  386 ttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaa 463  Q
    ||||||||||||||||||||| ||  |||| ||||||||| | ||| |||||| | | |||||| |||||||| ||||    
T  43338202 ttatggaaacagcttatgacatgttcataatctattttcagcctattttcataagctctccatgttagcttatgaaaa 43338125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 477
Target Start/End: Original strand, 51695505 - 51695570
Alignment:
Q  412 ataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 477  Q
    |||||||||||||| ||||| ||||||  || |||| |||||||||| |||||| || ||||||||    
T  51695505 ataagctattttcagcttattttcataaattctccaagatagcttatgaaaacatctgataactta 51695570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 412 - 472
Target Start/End: Complemental strand, 473224 - 473164
Alignment:
Q  412 ataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 472  Q
    ||||||| |||||||||||| |||||| ||| ||||  | | |||||||||||||||||||    
T  473224 ataagcttttttcaacttattttcataagttctccaatagaacttataaaaacaacttata 473164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 420 - 472
Target Start/End: Original strand, 3234033 - 3234085
Alignment:
Q  420 ttttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 472  Q
    ||||| |||||| |||||| ||| ||||  |||||||||||||||||||||||    
T  3234033 ttttctacttattttcataagttctccaatatagcttataaaaacaacttata 3234085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 396 - 472
Target Start/End: Original strand, 12564493 - 12564569
Alignment:
Q  396 agcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 472  Q
    ||||||||||| ||| ||||| | |||||| ||||| | |||| ||| |||| |||||||||| |||||||| ||||    
T  12564493 agcttatgacaagtcaataagttgttttcagcttatttccataagttctccaagatagcttatgaaaacaacctata 12564569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 413 - 477
Target Start/End: Complemental strand, 25944491 - 25944427
Alignment:
Q  413 taagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 477  Q
    ||||||||||||| ||||| ||||||  | ||||| |||||||||| |||||  |||||||||||    
T  25944491 taagctattttcagcttattttcataattaatccaggatagcttatgaaaaccgcttataactta 25944427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 420 - 472
Target Start/End: Original strand, 26779943 - 26779995
Alignment:
Q  420 ttttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 472  Q
    |||||||||||| |||||| ||| | || |||||||||| |||||||||||||    
T  26779943 ttttcaacttattttcataagttcttcaagatagcttatgaaaacaacttata 26779995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 420 - 468
Target Start/End: Original strand, 29270299 - 29270347
Alignment:
Q  420 ttttcaacttatgttcataggttatccatgatagcttataaaaacaact 468  Q
    |||||||||||| || ||| ||| | |||||||||||||||||||||||    
T  29270299 ttttcaacttattttgataagttcttcatgatagcttataaaaacaact 29270347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 386 - 458
Target Start/End: Complemental strand, 35925776 - 35925704
Alignment:
Q  386 ttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttat 458  Q
    ||||| ||||||||||||||| ||  ||||||| |||||||||||| | ||||   | |||||||||||||||    
T  35925776 ttatgaaaacagcttatgacatgttcataagctgttttcaacttatttccataaactctccatgatagcttat 35925704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 412 - 472
Target Start/End: Complemental strand, 42174915 - 42174855
Alignment:
Q  412 ataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 472  Q
    ||||||| |||| ||||||| |||||| ||| ||||  ||| |||||||||||||||||||    
T  42174915 ataagctgtttttaacttattttcataagttctccaatataacttataaaaacaacttata 42174855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 343 - 477
Target Start/End: Complemental strand, 11514025 - 11513893
Alignment:
Q  343 attatctacgggcataagaatttgttagattgctttaaagaggttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggtt 442  Q
    |||||||||  ||||||| | |||| ||| || |||| |||| ||||| |||||||  ||| || | |||||||||||||||| ||||| | || | |||    
T  11514025 attatctactagcataagcacttgtgagactgttttagagagcttatgaaaacagc--atggcatgcctataagctattttcagcttatttccaaaagtt 11513928  T
Q  443 atccatgatagcttataaaaacaacttataactta 477  Q
     ||||||||||||||| ||||||||||||| ||||    
T  11513927 ctccatgatagcttatgaaaacaacttatagctta 11513893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 477
Target Start/End: Original strand, 10563545 - 10563633
Alignment:
Q  389 tggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 477  Q
    |||||||||| ||||||| ||| |||||||||||||| ||||| ||| || | | | ||  ||||||||| ||||||||||||||||||    
T  10563545 tggaaacagcctatgacatgtccataagctattttcagcttattttcttaagctcttcagcatagcttatgaaaacaacttataactta 10563633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 386 - 472
Target Start/End: Original strand, 43279512 - 43279599
Alignment:
Q  386 ttatggaaacagcttatgacacgtct-ataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 472  Q
    ||||| |||||||||||||||  | | ||||||| |||||||||||| |||| | ||| ||||  |||||||||||||||||||||||    
T  43279512 ttatgaaaacagcttatgacaattttcataagcttttttcaacttattttcacaagttctccaatatagcttataaaaacaacttata 43279599  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 379 - 472
Target Start/End: Original strand, 41851141 - 41851234
Alignment:
Q  379 aaagaggttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 472  Q
    |||||| ||| ||||||||||||||||| ||| ||||||   |||||  |||| | |||| |||||||| |||||| |||||||| ||||||||    
T  41851141 aaagagcttacggaaacagcttatgacatgtccataagccgatttcactttatctccataagttatccaagatagcatataaaaataacttata 41851234  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 477
Target Start/End: Complemental strand, 18066215 - 18066123
Alignment:
Q  386 ttatggaaacagcttatgacacgtct-ataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 477  Q
    ||||| |||||||||||||||   || |||||||||||||| ||||| ||| || ||| |||| |||||||||| |||||| |||||| ||||    
T  18066215 ttatgaaaacagcttatgacattgctcataagctattttcaccttattttcttaagttctccaagatagcttatgaaaacagcttatagctta 18066123  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 472
Target Start/End: Complemental strand, 26202088 - 26202028
Alignment:
Q  412 ataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 472  Q
    ||||||| |||||||||||| |||||| ||| ||||  ||| |||||||||||||||||||    
T  26202088 ataagcttttttcaacttattttcataagttctccaatatatcttataaaaacaacttata 26202028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 477
Target Start/End: Complemental strand, 39983413 - 39983337
Alignment:
Q  401 atgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 477  Q
    |||||| ||||||||||||||||||  |||| |||||  | | |||| |||||||||| ||||||||||||| ||||    
T  39983413 atgacatgtctataagctattttcagtttattttcattagctctccaggatagcttatgaaaacaacttatagctta 39983337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 412 - 474
Target Start/End: Complemental strand, 12289857 - 12289795
Alignment:
Q  412 ataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataac 474  Q
    ||||||| |||||||||||| |||||| ||| ||||  |||  ||||||||||||||||||||    
T  12289857 ataagcttttttcaacttattttcataagttctccaatataaattataaaaacaacttataac 12289795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 477
Target Start/End: Complemental strand, 34102098 - 34102013
Alignment:
Q  392 aaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 477  Q
    ||||||||||| ||| ||  |||  |||||||||||||||  || ||   |||||| |||||||||||||||||||| ||||||||    
T  34102098 aaacagcttataacatgtacatactctattttcaacttattctcgtaaactatccaggatagcttataaaaacaactaataactta 34102013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 463
Target Start/End: Original strand, 34652020 - 34652097
Alignment:
Q  386 ttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaa 463  Q
    |||| |||||| ||||||||| ||| ||||||| |||||||||||| | |||| | | |||| |||||||||| ||||    
T  34652020 ttatagaaacaacttatgacatgtccataagctgttttcaacttatttccataagctctccaagatagcttatgaaaa 34652097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 477
Target Start/End: Original strand, 1742011 - 1742107
Alignment:
Q  381 agaggttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 477  Q
    |||| ||||||||||| ||||||||| ||  ||||||||| |||||||||| | ||||   | | |||||||| |||| |||||| |||||| ||||    
T  1742011 agagcttatggaaacaacttatgacatgtgcataagctatcttcaacttatttccataaactcttcatgatagattatgaaaacagcttatatctta 1742107  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 449 - 477
Target Start/End: Original strand, 7751488 - 7751516
Alignment:
Q  449 gatagcttataaaaacaacttataactta 477  Q
    |||||||||||||||||||||||||||||    
T  7751488 gatagcttataaaaacaacttataactta 7751516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 421 - 477
Target Start/End: Complemental strand, 9478003 - 9477947
Alignment:
Q  421 tttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 477  Q
    ||||||||||| ||||||   | |||| |||||||||| ||||||||||||||||||    
T  9478003 tttcaacttattttcataacctctccaggatagcttatgaaaacaacttataactta 9477947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 423
Target Start/End: Complemental strand, 15377851 - 15377815
Alignment:
Q  387 tatggaaacagcttatgacacgtctataagctatttt 423  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  15377851 tatggaaacaacttatgacacgtccataagctatttt 15377815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 420 - 472
Target Start/End: Complemental strand, 20952407 - 20952355
Alignment:
Q  420 ttttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 472  Q
    |||||||||||| |||||| ||| ||||  |||||| ||||||||||||||||    
T  20952407 ttttcaacttattttcataagttctccaatatagctaataaaaacaacttata 20952355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 386 - 438
Target Start/End: Original strand, 32106783 - 32106835
Alignment:
Q  386 ttatggaaacagcttatgacacgtctataagctattttcaacttatgttcata 438  Q
    ||||| |||||||||||||||  ||| |||||| ||||||| |||||||||||    
T  32106783 ttatgaaaacagcttatgacatatctgtaagctgttttcaaattatgttcata 32106835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 412 - 472
Target Start/End: Complemental strand, 32592646 - 32592586
Alignment:
Q  412 ataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 472  Q
    ||||||| || ||||||||| |||||| ||| ||||  || ||||||||||||||||||||    
T  32592646 ataagcttttctcaacttattttcataagttctccaatattgcttataaaaacaacttata 32592586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 386 - 431
Target Start/End: Original strand, 29768623 - 29768668
Alignment:
Q  386 ttatggaaacagcttatgacacgtctataagctattttcaacttat 431  Q
    ||||| |||| |||||||||| ||||||||||||||||||||||||    
T  29768623 ttatgaaaacggcttatgacatgtctataagctattttcaacttat 29768668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 422 - 472
Target Start/End: Original strand, 19022605 - 19022655
Alignment:
Q  422 ttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 472  Q
    |||||||||| |||||| ||| ||||  |||||||||||||||||||||||    
T  19022605 ttcaacttattttcataagttctccaatatagcttataaaaacaacttata 19022655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 477
Target Start/End: Complemental strand, 44822011 - 44821954
Alignment:
Q  420 ttttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 477  Q
    |||||||||||| |||||| ||| ||||  ||||||||| |||||| |||||||||||    
T  44822011 ttttcaacttattttcataagttctccagaatagcttatgaaaacagcttataactta 44821954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 463
Target Start/End: Complemental strand, 45078352 - 45078287
Alignment:
Q  398 cttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaa 463  Q
    ||||||||| ||| ||||||| |||||||||||| | || | ||||||| ||||||||||| ||||    
T  45078352 cttatgacatgtccataagctgttttcaacttatttccacaagttatccgtgatagcttatgaaaa 45078287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 477
Target Start/End: Original strand, 45790443 - 45790500
Alignment:
Q  420 ttttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 477  Q
    |||||| ||||| |||||| ||||||||  |||| |||||||||||||||||| ||||    
T  45790443 ttttcagcttattttcataagttatccaatatagtttataaaaacaacttatagctta 45790500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 473
Target Start/End: Original strand, 47130803 - 47130856
Alignment:
Q  420 ttttcaacttatgttcataggttatccatgatagcttataaaaacaacttataa 473  Q
    |||||||||||| |||| | ||| |||| |||||||||| ||||||||||||||    
T  47130803 ttttcaacttattttcacaagttctccaagatagcttatgaaaacaacttataa 47130856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 449 - 477
Target Start/End: Complemental strand, 32210290 - 32210262
Alignment:
Q  449 gatagcttataaaaacaacttataactta 477  Q
    |||||||||||||||||||||||||||||    
T  32210290 gatagcttataaaaacaacttataactta 32210262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 362 - 430
Target Start/End: Complemental strand, 44687040 - 44686972
Alignment:
Q  362 atttgttagattgctttaaagaggttatggaaacagcttatgacacgtctataagctattttcaactta 430  Q
    |||||| ||| | ||| |||||| ||||||||||| ||||||||| ||| || |||| |||||||||||    
T  44687040 atttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaactta 44686972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 412 - 472
Target Start/End: Complemental strand, 48470104 - 48470044
Alignment:
Q  412 ataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 472  Q
    ||||||| |||| | |||||||||||| ||||| ||  ||||||||| |||||||||||||    
T  48470104 ataagcttttttgagcttatgttcataagttattcaaaatagcttatgaaaacaacttata 48470044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 504 - 561
Target Start/End: Original strand, 84690 - 84747
Alignment:
Q  504 ggttttctggtaagtaggagtgaaacaatatagctattttcatattaataaacttatt 561  Q
    |||||||| |||||||  ||||||| |||| ||||| | |||||||||||||||||||    
T  84690 ggttttctcgtaagtattagtgaaataatagagctagtgtcatattaataaacttatt 84747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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