View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4755-Insertion-1 (Length: 1022)
Name: NF4755-Insertion-1
Description: NF4755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4755-Insertion-1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 838; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 838; E-Value: 0
Query Start/End: Original strand, 123 - 1019
Target Start/End: Original strand, 53498102 - 53498995
Alignment:
| Q |
123 |
ttaaattcaatagcaaaaaatttgaataaggattataccttctgggagttctggctgatcaaagggactacagagagtctttgctggtcccatctcattc |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53498102 |
ttaaattcaatagcaaaaaatttgaataaggattataccttctgggagttctggctgatcaaagggactacagagagtctttgctggtcccatctcattc |
53498201 |
T |
|
| Q |
223 |
tctgtctttcttttgacatctaattccacatcctgaagcatatatagataaaaaacagtcaacaagaaagctcttttcaaataattgttcaaattgtata |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53498202 |
tctgtctttcttttgacatctaattccacatcctgaagcatatatagataaaaaacagtcaacaagaaagctcttttcaaataattgttcaaattgtata |
53498301 |
T |
|
| Q |
323 |
attatgtctcttggtannnnnnnnggtgagactcgttataaaaatgtaatgctaacaagttcttttgatatgatgaagaatatataaatcttgattctta |
422 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53498302 |
attatgtctcttggtattttttttggtgagactcgttataaaaatgtaatgctaacaagttcttttgatatgatgaagaatatataaatcttgattctta |
53498401 |
T |
|
| Q |
423 |
atttagttgtttataaatagtgctcatttaatttcatctaattatatatattggtgtcgccctcctatatcttgaactaaagacgtctatgtatcagtcc |
522 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53498402 |
atttagttgtttataaatagtgctcatttaatttcatctaattatatatattggtgtcgccctcctatatcttgaactaaagacgtctatgtatcagtcc |
53498501 |
T |
|
| Q |
523 |
atgtgtcagttttttgttaatttagacttcaaaatagtgaaacacctagaattattataaggatttaattataactgcataagaaaatacacaatttcta |
622 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53498502 |
atgtgtcagttttttgttaatttagacttcaaaatagggaaacacctagaattattataaggatttaattataactgcataagaaaatacacaatttcta |
53498601 |
T |
|
| Q |
623 |
ccttctcatcacaccaaggagctaagatcatcattctttgattcaaagcttctttgaactcctcccacgtatgtatgacttgaatacattcatctcgttt |
722 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53498602 |
ccttctcatcacaccaaggagctaagatcatctttctttgattcaaagcttctttgaactcctcccacgtatgtatgacttgaatacattcatctcgttt |
53498701 |
T |
|
| Q |
723 |
ttgttttgtaacatcgaacatattttgttgaatattattgaggaactttttaatttcttcaaccaaatcagcattagcaatgtgaatctttgctccatta |
822 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53498702 |
ttgttttgcaacatcgaacatattttgttgaatattattgaggaactttctaatttcttcaaccaaatcagcattagcaatgtgaatctttgctccatta |
53498801 |
T |
|
| Q |
823 |
tcacgtcgaacaacacaaacctgtgcaaaattgaagtgatttatttggtgtctcattgaacatacagggtagaagcaaaatgacatgtgagaatataagg |
922 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53498802 |
tcacgtcgaacaacacaaacctgtgcaaaattgaagtgatttatttggtgtctcattgaacatacagggtagaagcaaaatgacatgtgagaatataa-- |
53498899 |
T |
|
| Q |
923 |
gagcaacaacaggacaacatagataacctgtttattttctaaatccattggcctaatttcaatccttagaagggacgcctttcatttcccattcaga |
1019 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
53498900 |
gagcaacaacaggacaacatagataacctgtttattttctaaatccattggcctaatttcaatccttag-agggacgcctttcatttcccattcaga |
53498995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 516 - 1019
Target Start/End: Original strand, 53490898 - 53491401
Alignment:
| Q |
516 |
tcagtccatgtgtcagttttttgttaatttagacttcaaaatagtgaaacacctagaattattataaggatttaatt-ataactgcataagaaaatacac |
614 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| ||||||| || |||||||||||||||||| || |||| || ||||||||| |||| |
|
|
| T |
53490898 |
tcagtccatgtgtcacttttttgttaatttagacttcaaaatagggaaacacatataattattataaggatttattttataattgtataagaaaacacac |
53490997 |
T |
|
| Q |
615 |
aatttctaccttctcatcacaccaaggagctaagatcatcattctttgattcaaagcttctttgaactcctcccacgtatgtatgacttgaatacattca |
714 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53490998 |
aatttctaccttctcatcacaccaaggagctaagatcatctttctttgattcaaagcttctttgaactcctcccacgtatgtatgacttgaatacattca |
53491097 |
T |
|
| Q |
715 |
tctcgtttttgttttgtaacatcgaacatattttgttgaatattattgaggaactttttaatttcttcaaccaaatcagcattagcaatgtgaatctttg |
814 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
53491098 |
tctcgtttttgttttgcaacatcgaacatattttgttgaatgatattgagcaactttttaatttcttcaaccaaatcagcattagcaatgtccatctttg |
53491197 |
T |
|
| Q |
815 |
ctccattatcacgtcgaacaacacaaacctgtgcaaaattgaagtgatttatttggtgtctcattgaacatacagggtagaagcaaaatgac--atgtga |
912 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| | |||||||||||||||| |||| | |
|
|
| T |
53491198 |
ctccattatcacgtagaacaacacaaacctgtgaaaaattgaagtgatttatttggtatctcattgaacataaacagtagaagcaaaatgacatatgtaa |
53491297 |
T |
|
| Q |
913 |
gaatataagggagcaacaacaggacaacatagataacctgtttattttctaaatccattggcctaatttcaatccttagaagggacgcctttcatttccc |
1012 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||| |||||| |||||||| |||||| ||||||||||||||| |||||| ||||||| ||||| |
|
|
| T |
53491298 |
gaatataa--gagcaacaacaagacaacatagataacctgcttatttactaaatcctttggcccaatttcaatccttag-agggacacctttcaattccc |
53491394 |
T |
|
| Q |
1013 |
attcaga |
1019 |
Q |
| |
|
| ||||| |
|
|
| T |
53491395 |
aatcaga |
53491401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 182; E-Value: 7e-98
Query Start/End: Original strand, 591 - 1019
Target Start/End: Original strand, 16069654 - 16070081
Alignment:
| Q |
591 |
ttataactgcataagaaaatacacaatttctaccttctcatcacaccaaggagctaagatcatcattctttgattcaaagcttctttgaactcctcccac |
690 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||| | |||||||||||||||||| ||||| ||||| |
|
|
| T |
16069654 |
ttataattgcataagaaaatactaaatttctaccttctcgtcacaccaaggacctaagatcatcttcctttgattcaaagcttctacaaactcatcccat |
16069753 |
T |
|
| Q |
691 |
gtatgtatgacttgaatacattcatctcgtttttgttttgtaacatcgaacatattttgttgaatattattgaggaactttttaatttcttcaaccaaat |
790 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||| ||||||||| |||||||| ||||||||||| |||| |
|
|
| T |
16069754 |
gtatgtatgacttgaatacattcatctcgtttctgttttgcaacatccaacatattttgttgaacattattgagcaacttttttatttcttcaactaaat |
16069853 |
T |
|
| Q |
791 |
cagcattagcaatgtgaatctttgctccattatcacgtcgaacaacacaaacctgtgcaaaattgaagtgatttatttggtgtct-cattgaacatacag |
889 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||| | |||| ||| ||| | ||||||| ||| | |
|
|
| T |
16069854 |
cagcattagcaatgtcaatctttgcaccattatcacgtcgaacaacacaaacctatgcaaaattgaaaaggttta-ttgatgtttgcattgaaaataaaa |
16069952 |
T |
|
| Q |
890 |
ggtagaagcaaaatgacatgtgagaatataagggagcaacaacaggacaacatagataacctgtttattttctaaatccattggcctaatttcaatcctt |
989 |
Q |
| |
|
| || ||||| |||||||| ||| | ||| | |||| || | ||||||| |||||||| |||||| ||||| || || ||| |||||||| | || |
|
|
| T |
16069953 |
gataaaagcataatgacatatgaaagaatacaagtgcaataatataacaacattaataacctgcttatttcctaaaccctttagcccaatttcaaccatt |
16070052 |
T |
|
| Q |
990 |
agaagggacgcctttcatttcccattcaga |
1019 |
Q |
| |
|
| ||||||| |||||||||||||||||||| |
|
|
| T |
16070053 |
a-aagggacacctttcatttcccattcaga |
16070081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 167 - 466
Target Start/End: Original strand, 53488747 - 53489035
Alignment:
| Q |
167 |
ggagttctggctgatcaaagggactacagagagtctttgctggtcccatctcattctctgtctttcttttgacatctaattccacatcctgaagcatata |
266 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||| ||||||||||| || |||||||||||||| |
|
|
| T |
53488747 |
ggagttctggctgatcaaagggacta--gagagtcttcgctgctcccatctcattctctgtcc--------acatctaattctacctcctgaagcatata |
53488836 |
T |
|
| Q |
267 |
tagataaaaaa-cagtcaacaagaaagctcttttcaaataattgttcaaattgtataattatgtctcttggtannnnnnnnggtgagactcgttataaaa |
365 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
53488837 |
tagataaaaaaacagttaacaagaaagctcttttcaaataattgttcaaattgtataattatgtctca--gtattttttttggtgagactcgttataaaa |
53488934 |
T |
|
| Q |
366 |
atgtaatgctaacaagttcttttgatatgatgaagaatatataaatcttgattcttaatttagttgtttataaatagtgctcatttaatttcatctaatt |
465 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
53488935 |
atgtaatgctaacaagttcttttgatatgatgaagaatatataaatcttgattcttagtttagatgtttataaatagcgctcatttaattttatctaatt |
53489034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 53497934 - 53498025
Alignment:
| Q |
8 |
cttacccgatttaaagcacttggtgcctgtaaaaccaacaccacacggtttaattaagcagcatcgatatcaattgtgagatacagagcagt |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53497934 |
cttacccgatttaaagcacttggtgcctgtaaaaccaacaccacacggtttaattaagcagcatcgatatcaattgtgagatacagagcagt |
53498025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 16069107 - 16069178
Alignment:
| Q |
157 |
ataccttctgggagttctggctgatcaaagggactacagagagtctttgctggtcccatctcattctctgtc |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
16069107 |
ataccttctgggagttctggctgatcaaagggactacagagaatctttgctgctcccatctcattctctgtc |
16069178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 347 - 472
Target Start/End: Original strand, 16069337 - 16069463
Alignment:
| Q |
347 |
ggtgagactcgttataaaaatgtaatgct--aacaagttcttttgatatgatgaagaatatataaatcttgattcttaatttagttgtttataaatagtg |
444 |
Q |
| |
|
|||||||| | ||||||||||||||| | |||||||||| |||||||| | |||||||||||||| ||||| ||||||| | ||||||||||||| |
|
|
| T |
16069337 |
ggtgagacactttataaaaatgtaatacccaaacaagttctattgatatggtattgaatatataaatcta-attctaaatttagatttttataaatagtg |
16069435 |
T |
|
| Q |
445 |
ctcatttaatttcatctaattatatata |
472 |
Q |
| |
|
||||||| |||||||||||||||||||| |
|
|
| T |
16069436 |
ctcattttatttcatctaattatatata |
16069463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 16068952 - 16068997
Alignment:
| Q |
8 |
cttacccgatttaaagcacttggtgcctgtaaaaccaacaccacac |
53 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
16068952 |
cttacccgatgcaaagcacttggtgcctgtaaaaccaacaacacac |
16068997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 2e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 606 - 854
Target Start/End: Complemental strand, 45355786 - 45355538
Alignment:
| Q |
606 |
aaaatacacaatttctaccttctcatcacaccaaggagctaagatcatcattctttgattcaaagcttctttgaactcctcccacgtatgtatgacttga |
705 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||||||| || ||| |||||||||| || ||||| ||||| |||||||||| ||| |
|
|
| T |
45355786 |
aaaatacacaattcatacctcctcatcacaccaaggagctaagatcatctttttttcattcaaagctgctacaaactcatcccatgtatgtatgatctga |
45355687 |
T |
|
| Q |
706 |
atacattcatctcgtttttgttttgtaacatcgaacatattttgttgaatattattgaggaactttttaatttcttcaaccaaatcagcattagcaatgt |
805 |
Q |
| |
|
|||||| |||||||||| ||||||| ||||| |||| ||| ||||||||||||| ||| ||||| || ||||| ||||||||||| ||||| |||||| |
|
|
| T |
45355686 |
atacatgcatctcgtttgtgttttgcgacatcaaacaaattctgttgaatattatcgagcaacttctttatttccacaaccaaatcatcattaccaatgt |
45355587 |
T |
|
| Q |
806 |
gaatctttgctccattatcacgtcgaacaacacaaacctgtgcaaaatt |
854 |
Q |
| |
|
||||||||||| ||||||| |||||| ||| |||||||||||||| |
|
|
| T |
45355586 |
cgatctttgctccgctatcacgacgaacagcacggacctgtgcaaaatt |
45355538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 155 - 263
Target Start/End: Complemental strand, 45356454 - 45356346
Alignment:
| Q |
155 |
ttataccttctgggagttctggctgatcaaagggactacagagagtctttgctggtcccatctcattctctgtctttcttttgacatctaattccacatc |
254 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| || |||||||| | ||| ||||| || |||| || |||||||||| |||||| || |
|
|
| T |
45356454 |
ttataccttcggggagttctggctgatcaaagggactacaaagtgtctttgcagctcctgtctcaccctttgtccttgctttgacatctttttccacctc |
45356355 |
T |
|
| Q |
255 |
ctgaagcat |
263 |
Q |
| |
|
||||||||| |
|
|
| T |
45356354 |
ctgaagcat |
45356346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 263
Target Start/End: Original strand, 28941552 - 28941660
Alignment:
| Q |
155 |
ttataccttctgggagttctggctgatcaaagggactacagagagtctttgctggtcccatctcattctctgtctttcttttgacatctaattccacatc |
254 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||| |||||||| | ||| ||||| || |||| || |||||||||| |||||| || |
|
|
| T |
28941552 |
ttataccttcggggagttctggctgatcaaagggaatacagagtgtctttgcagctcctgtctcaccctttgtccttgctttgacatctttttccacctc |
28941651 |
T |
|
| Q |
255 |
ctgaagcat |
263 |
Q |
| |
|
|| |||||| |
|
|
| T |
28941652 |
ctaaagcat |
28941660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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