View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4755-Insertion-3 (Length: 630)

Name: NF4755-Insertion-3
Description: NF4755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4755-Insertion-3
NF4755-Insertion-3
[»] chr4 (13 HSPs)
chr4 (305-630)||(25792989-25793319)
chr4 (7-268)||(25792702-25792969)
chr4 (382-478)||(2996568-2996664)
chr4 (412-473)||(52259631-52259692)
chr4 (382-426)||(21043214-21043258)
chr4 (393-475)||(54426041-54426124)
chr4 (388-473)||(17822849-17822935)
chr4 (382-463)||(27123331-27123412)
chr4 (392-472)||(40831018-40831098)
chr4 (421-478)||(49202640-49202697)
chr4 (393-478)||(50800020-50800104)
chr4 (393-473)||(55414409-55414490)
chr4 (392-432)||(35726740-35726780)
[»] chr3 (20 HSPs)
chr3 (148-225)||(10135110-10135187)
chr3 (506-604)||(10101874-10101972)
chr3 (506-604)||(10133715-10133813)
chr3 (125-203)||(10073013-10073091)
chr3 (524-630)||(10212816-10212917)
chr3 (387-473)||(39980729-39980816)
chr3 (381-478)||(1217778-1217875)
chr3 (382-466)||(37273141-37273225)
chr3 (390-473)||(53789447-53789531)
chr3 (506-567)||(10074981-10075042)
chr3 (531-580)||(10136332-10136381)
chr3 (381-478)||(39602188-39602285)
chr3 (388-432)||(30923883-30923927)
chr3 (387-473)||(21367667-21367754)
chr3 (387-478)||(34382937-34383028)
chr3 (393-432)||(48300472-48300511)
chr3 (413-467)||(901930-901984)
chr3 (387-464)||(45541580-45541657)
chr3 (387-439)||(5391913-5391965)
chr3 (413-473)||(47132331-47132391)
[»] chr8 (14 HSPs)
chr8 (382-476)||(26473731-26473825)
chr8 (398-458)||(42597453-42597513)
chr8 (356-478)||(11415149-11415271)
chr8 (382-478)||(6509282-6509378)
chr8 (387-439)||(31875579-31875631)
chr8 (382-473)||(11569436-11569527)
chr8 (387-473)||(39551193-39551279)
chr8 (421-478)||(9956832-9956889)
chr8 (382-423)||(26499766-26499807)
chr8 (412-473)||(43504751-43504812)
chr8 (398-466)||(20672757-20672825)
chr8 (413-473)||(27028831-27028891)
chr8 (382-466)||(30259121-30259205)
chr8 (422-478)||(37461137-37461193)
[»] chr6 (10 HSPs)
chr6 (387-476)||(20368164-20368253)
chr6 (345-464)||(2455819-2455938)
chr6 (387-478)||(31624085-31624176)
chr6 (382-478)||(7148661-7148757)
chr6 (390-473)||(4246410-4246493)
chr6 (382-463)||(2460130-2460211)
chr6 (445-478)||(33828641-33828674)
chr6 (413-473)||(6536615-6536675)
chr6 (382-458)||(8420176-8420252)
chr6 (382-466)||(32171362-32171446)
[»] chr5 (10 HSPs)
chr5 (381-478)||(41957429-41957526)
chr5 (387-456)||(31688056-31688125)
chr5 (382-478)||(32172648-32172744)
chr5 (387-478)||(2568653-2568744)
chr5 (395-473)||(32703268-32703346)
chr5 (416-470)||(37954689-37954743)
chr5 (393-478)||(6587097-6587182)
chr5 (445-478)||(34245719-34245752)
chr5 (388-432)||(4273362-4273406)
chr5 (387-466)||(39105471-39105551)
[»] chr1 (25 HSPs)
chr1 (382-478)||(15515536-15515632)
chr1 (382-473)||(27140478-27140569)
chr1 (399-478)||(7218070-7218149)
chr1 (391-478)||(28689440-28689529)
chr1 (399-473)||(31294517-31294591)
chr1 (387-475)||(49938745-49938834)
chr1 (382-478)||(39270404-39270500)
chr1 (388-439)||(11695895-11695946)
chr1 (413-475)||(1510320-1510382)
chr1 (345-426)||(15581301-15581382)
chr1 (381-426)||(27145968-27146013)
chr1 (413-466)||(27820347-27820400)
chr1 (382-459)||(32515420-32515497)
chr1 (413-478)||(35179134-35179199)
chr1 (414-471)||(39603842-39603899)
chr1 (387-464)||(43338125-43338202)
chr1 (413-478)||(51695505-51695570)
chr1 (413-473)||(473164-473224)
chr1 (421-473)||(3234033-3234085)
chr1 (397-473)||(12564493-12564569)
chr1 (414-478)||(25944427-25944491)
chr1 (421-473)||(26779943-26779995)
chr1 (421-469)||(29270299-29270347)
chr1 (387-459)||(35925704-35925776)
chr1 (413-473)||(42174855-42174915)
[»] chr2 (17 HSPs)
chr2 (344-478)||(11513893-11514025)
chr2 (390-478)||(10563545-10563633)
chr2 (387-473)||(43279512-43279599)
chr2 (380-473)||(41851141-41851234)
chr2 (387-478)||(18066123-18066215)
chr2 (413-473)||(26202028-26202088)
chr2 (402-478)||(39983337-39983413)
chr2 (413-475)||(12289795-12289857)
chr2 (393-478)||(34102013-34102098)
chr2 (387-464)||(34652020-34652097)
chr2 (382-478)||(1742011-1742107)
chr2 (450-478)||(7751488-7751516)
chr2 (422-478)||(9477947-9478003)
chr2 (388-424)||(15377815-15377851)
chr2 (421-473)||(20952355-20952407)
chr2 (387-439)||(32106783-32106835)
chr2 (413-473)||(32592586-32592646)
[»] scaffold0045 (1 HSPs)
scaffold0045 (505-562)||(84690-84747)
[»] chr7 (9 HSPs)
chr7 (387-432)||(29768623-29768668)
chr7 (423-473)||(19022605-19022655)
chr7 (421-478)||(44821954-44822011)
chr7 (399-464)||(45078287-45078352)
chr7 (421-478)||(45790443-45790500)
chr7 (421-474)||(47130803-47130856)
chr7 (450-478)||(32210262-32210290)
chr7 (363-431)||(44686972-44687040)
chr7 (413-473)||(48470044-48470104)


Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 305 - 630
Target Start/End: Original strand, 25792989 - 25793319
Alignment:
Q  305 gtgtccatag-atagattaagggcttgtttaggtcagattattatctacgggcataagaatttgttagattgctttaaagaggttatggaaacagcttat 403  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  25792989 gtgtccataggatagattaagggcttgttttggtcagattattatctacgggcataagaatttgttagattgctttaaagaggttatggaaacaggttat 25793088  T
Q  404 gacacgtctataagctattttcaacttatgttcataggtta----tccatgatagcttataaaaacaacttataacttagtgacgattatactttttctt 499  Q
    |||||||| ||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25793089 gacacgtccataagctattttcaacttatgttcataggttagatatccatgatagcttataaaaacaacttataacttaatgacgattatactttttctt 25793188  T
Q  500 tagggggttttctggtaagtagtagtgaaacaatatagctattttcatattaataaacttattcatgtcatgaacaagccttcatatatttgactggata 599  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25793189 tagggggttttctggtaagtagtagtgaaacaatatagctattgtcatattaataaacttattcatgtcatgaacaagccttcatatatttgactggata 25793288  T
Q  600 tatattcttgatcattttagggttgtgttta 630  Q
    |||||||||||||||||||||| ||||||||    
T  25793289 tatattcttgatcattttagggctgtgttta 25793319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 7 - 268
Target Start/End: Original strand, 25792702 - 25792969
Alignment:
Q  7 agtattaaaaatgaaagtttgtgtttgatc-------gctaaaaaattatctccctgtaacaaactaactactaacattagcttatcaaaaacgaaaagt 99  Q
    ||||||||||||||||||||||||||||||       ||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||    
T  25792702 agtattaaaaatgaaagtttgtgtttgatctctgctcgctaacaaattatctccctgtaacaaactaactactaacattagcttatcaaaa-caaaaggt 25792800  T
Q  100 atacattccttttctaattgtaagatttttggttgtatgatcaggtaatttttgactttcgtttcttggcactccttgctgttggaggttccttggctgg 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25792801 atacattccttttctaattgtaagatttttggttgtatgatcaggtaatttttgactttcgtttcttggcactccttgctgttggaggttccttggctgg 25792900  T
Q  200 ctcactcctctgctttctaaatgtatagtttctcaacacctttagtaaatgagaagcaatgtgctataa 268  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25792901 ctcactcctctgctttctaaatgtatagtttctcaacacctttagtaaatgagaagcaatgtgctataa 25792969  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 382 - 478
Target Start/End: Complemental strand, 2996664 - 2996568
Alignment:
Q  382 agaggttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 478  Q
    |||| ||||| ||||| ||||||||| ||| ||||||| |||||||||||| |||||| | | |||| |||||||||| ||||||||||||||||||    
T  2996664 agagcttatgaaaacaacttatgacatgtccataagcttttttcaacttattttcatacgctctccaagatagcttatgaaaacaacttataactta 2996568  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 412 - 473
Target Start/End: Complemental strand, 52259692 - 52259631
Alignment:
Q  412 tataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 473  Q
    ||||||||||||||||||||| |||||| | | |||  ||||||||||||||||| ||||||    
T  52259692 tataagctattttcaacttattttcataagctctcccagatagcttataaaaacagcttata 52259631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 382 - 426
Target Start/End: Original strand, 21043214 - 21043258
Alignment:
Q  382 agaggttatggaaacagcttatgacacgtctataagctattttca 426  Q
    |||||||||||||||||||||||||||||  ||||||| ||||||    
T  21043214 agaggttatggaaacagcttatgacacgttcataagctgttttca 21043258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 475
Target Start/End: Complemental strand, 54426124 - 54426041
Alignment:
Q  393 aaacagcttatgacacgtct-ataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataac 475  Q
    |||||||||||||||  | | ||||||| ||||||| |||| |||||| ||| ||||  |||| ||||||||||||||||||||    
T  54426124 aaacagcttatgacaattttcataagcttttttcaagttattttcataagttctccaatatagattataaaaacaacttataac 54426041  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 388 - 473
Target Start/End: Original strand, 17822849 - 17822935
Alignment:
Q  388 tatggaaacagcttatgacacgtct-ataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 473  Q
    |||| |||||||||||||||  | | ||||||| |||| | ||||| |||||| ||| |||| |||||||||| |||||||||||||    
T  17822849 tatgaaaacagcttatgacatttttcataagctttttttagcttattttcataagttctccaagatagcttatgaaaacaacttata 17822935  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 463
Target Start/End: Original strand, 27123331 - 27123412
Alignment:
Q  382 agaggttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaa 463  Q
    |||| ||||||||||| ||||||||| |||| |||| | |||||||||||| | |||| | | ||||| |||||||| ||||    
T  27123331 agagcttatggaaacaacttatgacatgtctttaagttgttttcaacttatttccataagctctccataatagcttacaaaa 27123412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 472
Target Start/End: Original strand, 40831018 - 40831098
Alignment:
Q  392 gaaacagcttatgaca-cgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttat 472  Q
    ||||||||||| |||| | | |||||||| |||||||||||| |||||| ||| ||||   |||||||||||||||||||||    
T  40831018 gaaacagcttacgacaacttttataagcttttttcaacttat-ttcataagttctccaatctagcttataaaaacaacttat 40831098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 478
Target Start/End: Complemental strand, 49202697 - 49202640
Alignment:
Q  421 ttttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 478  Q
    |||||||||||| |||||  |||||||| |||||||||  ||||||||||||| ||||    
T  49202697 ttttcaacttattttcattagttatccaagatagcttacgaaaacaacttatagctta 49202640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 478
Target Start/End: Original strand, 50800020 - 50800104
Alignment:
Q  393 aaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 478  Q
    ||||| ||||||||| ||||||||||| |||||| ||||| |||  | ||| ||||||||||||||  |||||| |||||| ||||    
T  50800020 aaacaacttatgacatgtctataagctgttttcagcttat-ttccaaagttctccatgatagcttaagaaaacagcttatagctta 50800104  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 473
Target Start/End: Original strand, 55414409 - 55414490
Alignment:
Q  393 aaacagcttatgacacgtct-ataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 473  Q
    |||||||||||||||  | | ||||||| |||||||||||| |||||| ||| |||| |||| ||||| ||||||| |||||    
T  55414409 aaacagcttatgacatttttcataagcttttttcaacttattttcataagttctccaagataacttatgaaaacaatttata 55414490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 392 - 432
Target Start/End: Original strand, 35726740 - 35726780
Alignment:
Q  392 gaaacagcttatgacacgtctataagctattttcaacttat 432  Q
    |||| ||||||||||| ||| ||||||||||||||||||||    
T  35726740 gaaagagcttatgacatgtccataagctattttcaacttat 35726780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 7e-29; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 148 - 225
Target Start/End: Original strand, 10135110 - 10135187
Alignment:
Q  148 tttttgactttcgtttcttggcactccttgctgttggaggttccttggctggctcactcctctgctttctaaatgtat 225  Q
    |||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10135110 ttttcgactttcgtttctttgcattccttgctgttggaggttccttggctggctcactcctctgctttctaaatgtat 10135187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 506 - 604
Target Start/End: Original strand, 10101874 - 10101972
Alignment:
Q  506 gttttctggtaagtagtagtgaaacaatatagctattttcatattaataaacttattcatgtcatgaacaagccttcatatatttgactggatatatat 604  Q
    |||||||| |||||| | |||||| |||| ||||| | |||||||||||||||||||||||||||||| |||||| |||||||||||||  ||||||||    
T  10101874 gttttctgataagtattggtgaaataatagagctagtgtcatattaataaacttattcatgtcatgaataagcctacatatatttgactaaatatatat 10101972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 506 - 604
Target Start/End: Original strand, 10133715 - 10133813
Alignment:
Q  506 gttttctggtaagtagtagtgaaacaatatagctattttcatattaataaacttattcatgtcatgaacaagccttcatatatttgactggatatatat 604  Q
    |||||||| |||||| | |||||| |||| ||||| | |||||||||||||||||||||||||||||| |||||| |||||||||||||  ||||||||    
T  10133715 gttttctgataagtattggtgaaataatagagctagtgtcatattaataaacttattcatgtcatgaataagcctacatatatttgactaaatatatat 10133813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 125 - 203
Target Start/End: Original strand, 10073013 - 10073091
Alignment:
Q  125 tttttggttgtatgatcaggtaatttttgactttcgtttcttggcactccttgctgttggaggttccttggctggctca 203  Q
    |||||| |||| |||||||||  |||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  10073013 tttttgattgtgtgatcaggtcgttttcgactttcgtttctttgcactccttgctgttggaggttccttgactggctca 10073091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 524 - 630
Target Start/End: Original strand, 10212816 - 10212917
Alignment:
Q  524 gtgaaacaatatagctattttcatattaataaacttattcatgtcatgaacaagccttcatatatttgactggatatatattcttgatcattttagggtt 623  Q
    |||||| |||| ||||| | |||||||||||||||||||||||||||||| |||||| |||||||||||||  ||||||||     |||||||||||| |    
T  10212816 gtgaaataatagagctagtgtcatattaataaacttattcatgtcatgaataagcctacatatatttgactaaatatatat-----atcattttagggct 10212910  T
Q  624 gtgttta 630  Q
    |||||||    
T  10212911 gtgttta 10212917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 473
Target Start/End: Complemental strand, 39980816 - 39980729
Alignment:
Q  387 ttatggaaacagcttatgacacgtct-ataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 473  Q
    ||||| ||||||||||||||  || | ||||||| |||||||||||| |||||| ||| ||||  |||||||||||||||||||||||    
T  39980816 ttatgaaaacagcttatgactggtttcataagcttttttcaacttattttcataagttctccaatatagcttataaaaacaacttata 39980729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 381 - 478
Target Start/End: Original strand, 1217778 - 1217875
Alignment:
Q  381 aagaggttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 478  Q
    ||||| ||| ||||||||||||||||| ||| ||||| | |||||| ||||  |||||| ||| || | |||||||||| |||||| |||||||||||    
T  1217778 aagagcttacggaaacagcttatgacatgtccataagttgttttcatcttactttcataagttctcaaggatagcttatgaaaacagcttataactta 1217875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 382 - 466
Target Start/End: Complemental strand, 37273225 - 37273141
Alignment:
Q  382 agaggttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaaca 466  Q
    |||| ||||||||||| ||||||||| ||| ||||| | |||||||||||| | |||| ||| |||| |||||||||| ||||||    
T  37273225 agagcttatggaaacaacttatgacatgtccataagttgttttcaacttatttccataagttctccaagatagcttatgaaaaca 37273141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 390 - 473
Target Start/End: Original strand, 53789447 - 53789531
Alignment:
Q  390 tggaaacagcttatgacacgtct-ataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 473  Q
    ||||||||||||||||||| | | ||||||| |||||| ||||  |||||| ||| ||||||||||||||| | |||||||||||    
T  53789447 tggaaacagcttatgacacttttcataagcttttttcagcttaatttcataagttctccatgatagcttatgataacaacttata 53789531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 506 - 567
Target Start/End: Original strand, 10074981 - 10075042
Alignment:
Q  506 gttttctggtaagtagtagtgaaacaatatagctattttcatattaataaacttattcatgt 567  Q
    |||||||| |||||| | |||||| |||| ||||| | ||||||||||||||||||||||||    
T  10074981 gttttctgataagtattggtgaaataatagagctagtgtcatattaataaacttattcatgt 10075042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 531 - 580
Target Start/End: Original strand, 10136332 - 10136381
Alignment:
Q  531 aatatagctattttcatattaataaacttattcatgtcatgaacaagcct 580  Q
    |||| ||||| | |||||||||||||||||||||||||||||| ||||||    
T  10136332 aatacagctagtgtcatattaataaacttattcatgtcatgaataagcct 10136381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 381 - 478
Target Start/End: Original strand, 39602188 - 39602285
Alignment:
Q  381 aagaggttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 478  Q
    ||||| ||||| | ||||||||||||| ||  ||||  | |||||||||||| |||||| ||| || | |||||||||| |||||| |||||||||||    
T  39602188 aagagcttatgaagacagcttatgacatgttcataaattgttttcaacttattttcataagttctcaaagatagcttatgaaaacagcttataactta 39602285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 388 - 432
Target Start/End: Original strand, 30923883 - 30923927
Alignment:
Q  388 tatggaaacagcttatgacacgtctataagctattttcaacttat 432  Q
    |||||||||||||||||||| ||||||||||| |||||| |||||    
T  30923883 tatggaaacagcttatgacatgtctataagctgttttcagcttat 30923927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 473
Target Start/End: Complemental strand, 21367754 - 21367667
Alignment:
Q  387 ttatggaaacagcttatgacac-gtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 473  Q
    ||||| |||||||||||||||  ||  | ||||| |||||| ||||| |||||| ||| |||| |||||||||| |||||||||||||    
T  21367754 ttatgaaaacagcttatgacattgttcacaagctgttttcagcttattttcataagttctccaagatagcttatgaaaacaacttata 21367667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 478
Target Start/End: Complemental strand, 34383028 - 34382937
Alignment:
Q  387 ttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 478  Q
    |||||||||||| |||||| | ||||||||| | |||||| ||||| ||| || | | | || |||||||||| |||| |||||||||||||    
T  34383028 ttatggaaacagattatgatatgtctataagttgttttcatcttattttcttaagcttttcaggatagcttatgaaaagaacttataactta 34382937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 432
Target Start/End: Original strand, 48300472 - 48300511
Alignment:
Q  393 aaacagcttatgacacgtctataagctattttcaacttat 432  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  48300472 aaacagcttatgacatgtgtataagctattttcaacttat 48300511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 413 - 467
Target Start/End: Complemental strand, 901984 - 901930
Alignment:
Q  413 ataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaa 467  Q
    ||||||| |||||||||||| |||||| ||| ||||  |||||||||||||||||    
T  901984 ataagcttttttcaacttattttcataagttctccaatatagcttataaaaacaa 901930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 464
Target Start/End: Complemental strand, 45541657 - 45541580
Alignment:
Q  387 ttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaa 464  Q
    ||||| ||||||||||||||| ||  ||||||| ||||||  ||||  ||||| |||||||| |||||||||| ||||    
T  45541657 ttatgaaaacagcttatgacatgttcataagctgttttcaggttattctcataagttatccaagatagcttatgaaaa 45541580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 5391965 - 5391913
Alignment:
Q  387 ttatggaaacagcttatgacacgtctataagctattttcaacttatgttcata 439  Q
    ||||| ||||||||||||||| ||  ||||||| |||||||||||| ||||||    
T  5391965 ttatgaaaacagcttatgacatgttcataagctgttttcaacttattttcata 5391913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 413 - 473
Target Start/End: Complemental strand, 47132391 - 47132331
Alignment:
Q  413 ataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 473  Q
    ||||||| |||||||||||| ||||||  || ||||  |||||||||||||||||| ||||    
T  47132391 ataagcttttttcaacttattttcataacttctccaatatagcttataaaaacaacctata 47132331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 382 - 476
Target Start/End: Original strand, 26473731 - 26473825
Alignment:
Q  382 agaggttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataact 476  Q
    |||| ||||| ||||||||||||||| |||||||||||| ||| ||||||| |||||| | | || | |||||||||| ||||||||||| ||||    
T  26473731 agagcttatgaaaacagcttatgacatgtctataagctagttttaacttattttcataagctctctaggatagcttatgaaaacaacttacaact 26473825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 398 - 458
Target Start/End: Complemental strand, 42597513 - 42597453
Alignment:
Q  398 gcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagctta 458  Q
    |||||||||| ||||||||||| |||||||||||| | |||| |||||||| |||||||||    
T  42597513 gcttatgacatgtctataagctgttttcaacttatttccataagttatccaagatagctta 42597453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 478
Target Start/End: Complemental strand, 11415271 - 11415149
Alignment:
Q  356 cataagaatttgttagattgctttaaagaggttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagc 455  Q
    |||||| | |||| |||||| |||| |||| ||||||||||||||||| ||| ||| |||||||||| ||| ||||| |||| |   | || | ||||||    
T  11415271 cataagtacttgtgagattgttttagagagtttatggaaacagcttataacatgtccataagctattctcagcttattttcacaaactctctaggatagc 11415172  T
Q  456 ttataaaaacaacttataactta 478  Q
    |||| |||||| | |||||||||    
T  11415171 ttatgaaaacagcgtataactta 11415149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 382 - 478
Target Start/End: Original strand, 6509282 - 6509378
Alignment:
Q  382 agaggttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 478  Q
    |||| |||| |||||||||||||||| | |||||| ||||||||| ||||| |  ||| | | |||| |||||||||| |||||| |||||| ||||    
T  6509282 agagcttatagaaacagcttatgacatgcctataaactattttcaccttatttcaataagctctccaggatagcttatgaaaacagcttatagctta 6509378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 387 - 439
Target Start/End: Original strand, 31875579 - 31875631
Alignment:
Q  387 ttatggaaacagcttatgacacgtctataagctattttcaacttatgttcata 439  Q
    ||||||||||| ||||||||| ||| |||||| ||||||||||||| ||||||    
T  31875579 ttatggaaacaacttatgacatgtccataagccattttcaacttattttcata 31875631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 473
Target Start/End: Original strand, 11569436 - 11569527
Alignment:
Q  382 agaggttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 473  Q
    |||| ||||||||||||||||||||| ||  ||||| | |||||| ||||| |||| |   | ||||||||||||||| |||||| ||||||    
T  11569436 agagcttatggaaacagcttatgacatgtacataagttgttttcagcttattttcaaaatctctccatgatagcttatgaaaacagcttata 11569527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 387 - 473
Target Start/End: Original strand, 39551193 - 39551279
Alignment:
Q  387 ttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 473  Q
    ||||||||||| ||||||||| ||| | ||||| |||| ||||||| || ||| | | |||| || ||||||| |||||||||||||    
T  39551193 ttatggaaacaacttatgacatgtccaaaagctgtttttaacttatttttataagctctccaggaaagcttatgaaaacaacttata 39551279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 478
Target Start/End: Original strand, 9956832 - 9956889
Alignment:
Q  421 ttttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 478  Q
    |||||| ||||| |||||| ||| |||| ||||| |||| ||||||||||||||||||    
T  9956832 ttttcagcttattttcataagttctccaagatagattatgaaaacaacttataactta 9956889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 423
Target Start/End: Complemental strand, 26499807 - 26499766
Alignment:
Q  382 agaggttatggaaacagcttatgacacgtctataagctattt 423  Q
    |||||||||| |||||||||||| |||||||||| |||||||    
T  26499807 agaggttatgaaaacagcttatggcacgtctataggctattt 26499766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 473
Target Start/End: Complemental strand, 43504812 - 43504751
Alignment:
Q  412 tataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 473  Q
    |||||||| |||||| ||||| | |||| ||| |||| ||||||||||||||||| ||||||    
T  43504812 tataagctgttttcagcttatttccataagttctccaagatagcttataaaaacatcttata 43504751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 398 - 466
Target Start/End: Complemental strand, 20672825 - 20672757
Alignment:
Q  398 gcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaaca 466  Q
    |||||||||| ||  ||||||| |||||| ||||| |||||| | | |||| |||||||||||||||||    
T  20672825 gcttatgacatgttcataagctgttttcagcttattttcataagctctccaggatagcttataaaaaca 20672757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 413 - 473
Target Start/End: Complemental strand, 27028891 - 27028831
Alignment:
Q  413 ataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 473  Q
    |||||||||||||| ||||| |||||| | | |||| |||||||||| |||||| ||||||    
T  27028891 ataagctattttcagcttattttcataagctctccaagatagcttatgaaaacagcttata 27028831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 382 - 466
Target Start/End: Complemental strand, 30259205 - 30259121
Alignment:
Q  382 agaggttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaaca 466  Q
    |||| ||||||||||||||||||| | ||||||||| | ||||||  |||| | |||| ||| |||| ||||  |||||||||||    
T  30259205 agagcttatggaaacagcttatgatatgtctataagttgttttcagtttatttccataagttctccaagataatttataaaaaca 30259121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 37461193 - 37461137
Alignment:
Q  422 tttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 478  Q
    ||||||||||| || ||| ||||||| ||||||||||| |||||||| |||| ||||    
T  37461193 tttcaacttatttttataagttatccgtgatagcttatgaaaacaacatatagctta 37461137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 387 - 476
Target Start/End: Original strand, 20368164 - 20368253
Alignment:
Q  387 ttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataact 476  Q
    ||||| ||||| ||||||||| ||  |||||||| ||||||||||| |||||| ||| |||| || ||||||| ||||||||||||||||    
T  20368164 ttatgaaaacaacttatgacatgttcataagctagtttcaacttattttcataagttctccaagaaagcttatgaaaacaacttataact 20368253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 345 - 464
Target Start/End: Complemental strand, 2455938 - 2455819
Alignment:
Q  345 ttatctacgggcataagaatttgttagattgctttaaagaggttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggtta 444  Q
    |||||||| |||||||| | |||  |||||| ||  ||||| ||||||||||| ||||||||| | | |||| ||||||||||||||| | |||| | |     
T  2455938 ttatctaccggcataagcacttgcgagattgtttagaagagcttatggaaacaacttatgacatgcccataaactattttcaacttatttccataagctc 2455839  T
Q  445 tccatgatagcttataaaaa 464  Q
    |||| |||||||||| ||||    
T  2455838 tccaagatagcttatgaaaa 2455819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 387 - 478
Target Start/End: Complemental strand, 31624176 - 31624085
Alignment:
Q  387 ttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 478  Q
    ||||| ||||||||||||||| ||  ||||||| |||||||||||| ||||||  || |||| |||||| ||| |||||| |||||| ||||    
T  31624176 ttatgaaaacagcttatgacatgttcataagctgttttcaacttattttcataatttctccaagatagcctatgaaaacagcttatagctta 31624085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 382 - 478
Target Start/End: Complemental strand, 7148757 - 7148661
Alignment:
Q  382 agaggttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 478  Q
    |||| ||| ||||||| ||||||||  ||| |||||||||||||||||||| |||||| | | |||| | |||||||| |||| | |||||| ||||    
T  7148757 agagcttacggaaacaacttatgacttgtccataagctattttcaacttattttcataagctctccagggtagcttattaaaataccttatagctta 7148661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 473
Target Start/End: Complemental strand, 4246493 - 4246410
Alignment:
Q  390 tggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 473  Q
    |||||||| || |||||| ||| ||||||| |||||||||||| || ||| | | ||||| ||||||||| |||||| ||||||    
T  4246493 tggaaacaactcatgacatgtccataagctgttttcaacttatttttatatgctctccataatagcttatgaaaacagcttata 4246410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 463
Target Start/End: Original strand, 2460130 - 2460211
Alignment:
Q  382 agaggttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaa 463  Q
    |||| ||||||||||| ||||||||| |||| |||| | |||||||||||| | |||| | | ||||| |||||||| ||||    
T  2460130 agagcttatggaaacaacttatgacatgtctttaagttgttttcaacttatttccataagctctccataatagcttacaaaa 2460211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 478
Target Start/End: Complemental strand, 33828674 - 33828641
Alignment:
Q  445 tccatgatagcttataaaaacaacttataactta 478  Q
    ||||||||||||||| ||||||||||||||||||    
T  33828674 tccatgatagcttattaaaacaacttataactta 33828641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 413 - 473
Target Start/End: Complemental strand, 6536675 - 6536615
Alignment:
Q  413 ataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 473  Q
    ||||||| |||||||||||| ||||||  || ||||  ||||||| |||||||||||||||    
T  6536675 ataagcttttttcaacttattttcataaattctccaatatagcttctaaaaacaacttata 6536615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 382 - 458
Target Start/End: Original strand, 8420176 - 8420252
Alignment:
Q  382 agaggttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagctta 458  Q
    |||| |||| |||| ||||||||||| ||| | |||||||||||||||||| | |||| | | ||||| ||||||||    
T  8420176 agagcttatagaaatagcttatgacatgtccacaagctattttcaacttatttccataagctctccattatagctta 8420252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 382 - 466
Target Start/End: Original strand, 32171362 - 32171446
Alignment:
Q  382 agaggttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaaca 466  Q
    |||| ||||| ||||||||||||||| ||| | |||||||||||| ||||| | |||| | |||||| |||| || || ||||||    
T  32171362 agagcttatgaaaacagcttatgacaagtccagaagctattttcagcttatttccataagctatccaggataactaatgaaaaca 32171446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 381 - 478
Target Start/End: Original strand, 41957429 - 41957526
Alignment:
Q  381 aagaggttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 478  Q
    ||||| ||| ||||||||||||||||| ||| ||||| | |||||| ||||| |||||| ||| || | |||||||||| |||||| |||||||||||    
T  41957429 aagagcttacggaaacagcttatgacatgtccataagttgttttcatcttattttcataagttctcaaggatagcttatgaaaacagcttataactta 41957526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 387 - 456
Target Start/End: Complemental strand, 31688125 - 31688056
Alignment:
Q  387 ttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagct 456  Q
    |||| |||||||||||||||  |||||||||||||||||||||||| |||||| | | | ||||||||||    
T  31688125 ttatagaaacagcttatgacttgtctataagctattttcaacttattttcataagctctacatgatagct 31688056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 382 - 478
Target Start/End: Complemental strand, 32172744 - 32172648
Alignment:
Q  382 agaggttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 478  Q
    |||| ||||||||||| ||||||||| ||| |||||| ||||||| ||||| | |||  ||| | ||||||||||||| |||||| |||||| ||||    
T  32172744 agagcttatggaaacaacttatgacatgtccataagccattttcagcttatttccattagttcttcatgatagcttatgaaaacagcttatagctta 32172648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 478
Target Start/End: Complemental strand, 2568744 - 2568653
Alignment:
Q  387 ttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 478  Q
    ||||| |||||||||||||||  |  ||||| |||||| | ||||| |||||  | | ||||||||||||||| ||||||||||||| ||||    
T  2568744 ttatgaaaacagcttatgacatattcataagttatttttagcttattttcattagctctccatgatagcttatgaaaacaacttatagctta 2568653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 395 - 473
Target Start/End: Original strand, 32703268 - 32703346
Alignment:
Q  395 acagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 473  Q
    |||||||||||||||| ||||| || |||||| ||||| || |||  || |||  |||||||||| |||||||||||||    
T  32703268 acagcttatgacacgtttataaactgttttcagcttatttttataaattctcctagatagcttatgaaaacaacttata 32703346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 416 - 470
Target Start/End: Complemental strand, 37954743 - 37954689
Alignment:
Q  416 agctattttcaacttatgttcataggttatccatgatagcttataaaaacaactt 470  Q
    |||| |||||||||||| |||||| ||| ||||  ||||||||||||||||||||    
T  37954743 agcttttttcaacttattttcatatgttctccaatatagcttataaaaacaactt 37954689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 478
Target Start/End: Original strand, 6587097 - 6587182
Alignment:
Q  393 aaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 478  Q
    ||||||||||||||| ||  ||||||| ||| || ||||| |||| | ||| ||||  ||||||||| ||||||||||||| ||||    
T  6587097 aaacagcttatgacaggttcataagctgtttacagcttattttcacaagttctccactatagcttatgaaaacaacttatagctta 6587182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 478
Target Start/End: Complemental strand, 34245752 - 34245719
Alignment:
Q  445 tccatgatagcttataaaaacaacttataactta 478  Q
    ||||||||||||||||||||||||||||| ||||    
T  34245752 tccatgatagcttataaaaacaacttatagctta 34245719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 388 - 432
Target Start/End: Original strand, 4273362 - 4273406
Alignment:
Q  388 tatggaaacagcttatgacacgtctataagctattttcaacttat 432  Q
    |||||||||||||||||||  ||||||||| | ||||||||||||    
T  4273362 tatggaaacagcttatgacttgtctataagttgttttcaacttat 4273406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 387 - 466
Target Start/End: Complemental strand, 39105551 - 39105471
Alignment:
Q  387 ttatggaaacagcttatgacac-gtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaaca 466  Q
    ||||| |||||||||||||||  ||  |||||||||||| | ||||| |||||| ||| |||| |||||||||| ||||||    
T  39105551 ttatgaaaacagcttatgacattgttcataagctatttttagcttattttcataagttctccaagatagcttatgaaaaca 39105471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 382 - 478
Target Start/End: Complemental strand, 15515632 - 15515536
Alignment:
Q  382 agaggttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 478  Q
    |||| ||||| ||||| ||||||||| ||| ||| ||||||||||| |||| | |||| | ||||||||||| ||||| ||||||||||||| ||||    
T  15515632 agagtttatgaaaacaacttatgacatgtcaatacgctattttcaatttatttccataagctatccatgataacttatgaaaacaacttatagctta 15515536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 382 - 473
Target Start/End: Complemental strand, 27140569 - 27140478
Alignment:
Q  382 agaggttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 473  Q
    |||| ||| ||||||||||||||||| ||| ||||| | |||||| ||||| | |||| | | |||||||||||||||||||||| ||||||    
T  27140569 agagtttaaggaaacagcttatgacatgtccataagttgttttcagcttatttgcataagctctccatgatagcttataaaaacagcttata 27140478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 399 - 478
Target Start/End: Original strand, 7218070 - 7218149
Alignment:
Q  399 cttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 478  Q
    ||||||||||||  | ||||| |||||||||||| |||||| ||| |||| ||||| |||| ||||||||||||| ||||    
T  7218070 cttatgacacgttcacaagctgttttcaacttattttcataagttctccaggataggttatgaaaacaacttatagctta 7218149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 478
Target Start/End: Original strand, 28689440 - 28689529
Alignment:
Q  391 ggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttata--aaaacaacttataactta 478  Q
    ||||||||||||||||| ||| ||||| | |||||| ||||| |||||| | | |||| |||||||||||  ||||||||||||| ||||    
T  28689440 ggaaacagcttatgacatgtccataagttgttttcagcttattttcataagctttccaagatagcttatatgaaaacaacttatagctta 28689529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 473
Target Start/End: Original strand, 31294517 - 31294591
Alignment:
Q  399 cttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 473  Q
    |||||||||| || ||||||| |||||||||||| |||||| | | || ||||||| ||| ||||||||||||||    
T  31294517 cttatgacacatccataagctcttttcaacttattttcataagctctctatgatagtttacaaaaacaacttata 31294591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 387 - 475
Target Start/End: Complemental strand, 49938834 - 49938745
Alignment:
Q  387 ttatggaaacagcttatgacacgtct-ataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataac 475  Q
    ||||| |||||||||||||||  | | | ||||| |||||||||||| |||||| ||| || |  |||||||||||||||||||||||||    
T  49938834 ttatgaaaacagcttatgacaattttcaaaagcttttttcaacttattttcataagttctctaatatagcttataaaaacaacttataac 49938745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 382 - 478
Target Start/End: Original strand, 39270404 - 39270500
Alignment:
Q  382 agaggttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 478  Q
    |||| ||||| ||||||||| || || ||| ||||||| |||||||||||| |||||| | | || ||| |||||||| |||||| |||||| ||||    
T  39270404 agagcttatgaaaacagcttttggcatgtccataagctgttttcaacttattttcatatgctctctatggtagcttatgaaaacagcttatatctta 39270500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 439
Target Start/End: Complemental strand, 11695946 - 11695895
Alignment:
Q  388 tatggaaacagcttatgacacgtctataagctattttcaacttatgttcata 439  Q
    ||||||||||| |||||||| ||| ||||||| |||||||||||| ||||||    
T  11695946 tatggaaacagtttatgacatgtccataagctgttttcaacttattttcata 11695895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 413 - 475
Target Start/End: Original strand, 1510320 - 1510382
Alignment:
Q  413 ataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataac 475  Q
    ||||||| |||||||||||| ||| || ||| ||||  | |||||||||||||||||||||||    
T  1510320 ataagcttttttcaacttattttcgtaagttctccaatagagcttataaaaacaacttataac 1510382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 426
Target Start/End: Complemental strand, 15581382 - 15581301
Alignment:
Q  345 ttatctacgggcataagaatttgttagattgctttaaagaggttatggaaacagcttatgacacgtctataagctattttca 426  Q
    |||||||| | |||||| | |||| |||||| ||  ||||| | ||||||||| ||||||||| ||||||||||| ||||||    
T  15581382 ttatctactgacataagcacttgtgagattgtttggaagagctaatggaaacaacttatgacatgtctataagctgttttca 15581301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 426
Target Start/End: Complemental strand, 27146013 - 27145968
Alignment:
Q  381 aagaggttatggaaacagcttatgacacgtctataagctattttca 426  Q
    ||||| ||||||||||||||||||||| ||| ||||| ||||||||    
T  27146013 aagagcttatggaaacagcttatgacatgtccataagttattttca 27145968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 466
Target Start/End: Original strand, 27820347 - 27820400
Alignment:
Q  413 ataagctattttcaacttatgttcataggttatccatgatagcttataaaaaca 466  Q
    |||||||||||||| ||||| ||||||  || |||| |||||||||||||||||    
T  27820347 ataagctattttcagcttattttcataaattctccaagatagcttataaaaaca 27820400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 459
Target Start/End: Original strand, 32515420 - 32515497
Alignment:
Q  382 agaggttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttat 459  Q
    |||| ||||||||||||| ||||||| ||| ||||| | |||||||||||| |  ||| | | |||||||||||||||    
T  32515420 agagcttatggaaacagcgtatgacatgtcaataagttgttttcaacttatatctataagctctccatgatagcttat 32515497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 478
Target Start/End: Complemental strand, 35179199 - 35179134
Alignment:
Q  413 ataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 478  Q
    ||||||| |||||| ||||| |||||| ||| ||||| ||| ||||| |||||| |||||||||||    
T  35179199 ataagctgttttcagcttattttcataagttctccataataacttatgaaaacagcttataactta 35179134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 471
Target Start/End: Original strand, 39603842 - 39603899
Alignment:
Q  414 taagctattttcaacttatgttcataggttatccatgatagcttataaaaacaactta 471  Q
    ||||||||||||| ||||| |||||| | ||||||  ||||| |||||||||||||||    
T  39603842 taagctattttcagcttattttcataagctatccaaaatagcatataaaaacaactta 39603899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 464
Target Start/End: Complemental strand, 43338202 - 43338125
Alignment:
Q  387 ttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaa 464  Q
    ||||||||||||||||||||| ||  |||| ||||||||| | ||| |||||| | | |||||| |||||||| ||||    
T  43338202 ttatggaaacagcttatgacatgttcataatctattttcagcctattttcataagctctccatgttagcttatgaaaa 43338125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 478
Target Start/End: Original strand, 51695505 - 51695570
Alignment:
Q  413 ataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 478  Q
    |||||||||||||| ||||| ||||||  || |||| |||||||||| |||||| || ||||||||    
T  51695505 ataagctattttcagcttattttcataaattctccaagatagcttatgaaaacatctgataactta 51695570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 413 - 473
Target Start/End: Complemental strand, 473224 - 473164
Alignment:
Q  413 ataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 473  Q
    ||||||| |||||||||||| |||||| ||| ||||  | | |||||||||||||||||||    
T  473224 ataagcttttttcaacttattttcataagttctccaatagaacttataaaaacaacttata 473164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 421 - 473
Target Start/End: Original strand, 3234033 - 3234085
Alignment:
Q  421 ttttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 473  Q
    ||||| |||||| |||||| ||| ||||  |||||||||||||||||||||||    
T  3234033 ttttctacttattttcataagttctccaatatagcttataaaaacaacttata 3234085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 397 - 473
Target Start/End: Original strand, 12564493 - 12564569
Alignment:
Q  397 agcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 473  Q
    ||||||||||| ||| ||||| | |||||| ||||| | |||| ||| |||| |||||||||| |||||||| ||||    
T  12564493 agcttatgacaagtcaataagttgttttcagcttatttccataagttctccaagatagcttatgaaaacaacctata 12564569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 414 - 478
Target Start/End: Complemental strand, 25944491 - 25944427
Alignment:
Q  414 taagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 478  Q
    ||||||||||||| ||||| ||||||  | ||||| |||||||||| |||||  |||||||||||    
T  25944491 taagctattttcagcttattttcataattaatccaggatagcttatgaaaaccgcttataactta 25944427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 421 - 473
Target Start/End: Original strand, 26779943 - 26779995
Alignment:
Q  421 ttttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 473  Q
    |||||||||||| |||||| ||| | || |||||||||| |||||||||||||    
T  26779943 ttttcaacttattttcataagttcttcaagatagcttatgaaaacaacttata 26779995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 421 - 469
Target Start/End: Original strand, 29270299 - 29270347
Alignment:
Q  421 ttttcaacttatgttcataggttatccatgatagcttataaaaacaact 469  Q
    |||||||||||| || ||| ||| | |||||||||||||||||||||||    
T  29270299 ttttcaacttattttgataagttcttcatgatagcttataaaaacaact 29270347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 387 - 459
Target Start/End: Complemental strand, 35925776 - 35925704
Alignment:
Q  387 ttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttat 459  Q
    ||||| ||||||||||||||| ||  ||||||| |||||||||||| | ||||   | |||||||||||||||    
T  35925776 ttatgaaaacagcttatgacatgttcataagctgttttcaacttatttccataaactctccatgatagcttat 35925704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 413 - 473
Target Start/End: Complemental strand, 42174915 - 42174855
Alignment:
Q  413 ataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 473  Q
    ||||||| |||| ||||||| |||||| ||| ||||  ||| |||||||||||||||||||    
T  42174915 ataagctgtttttaacttattttcataagttctccaatataacttataaaaacaacttata 42174855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 344 - 478
Target Start/End: Complemental strand, 11514025 - 11513893
Alignment:
Q  344 attatctacgggcataagaatttgttagattgctttaaagaggttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggtt 443  Q
    |||||||||  ||||||| | |||| ||| || |||| |||| ||||| |||||||  ||| || | |||||||||||||||| ||||| | || | |||    
T  11514025 attatctactagcataagcacttgtgagactgttttagagagcttatgaaaacagc--atggcatgcctataagctattttcagcttatttccaaaagtt 11513928  T
Q  444 atccatgatagcttataaaaacaacttataactta 478  Q
     ||||||||||||||| ||||||||||||| ||||    
T  11513927 ctccatgatagcttatgaaaacaacttatagctta 11513893  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 390 - 478
Target Start/End: Original strand, 10563545 - 10563633
Alignment:
Q  390 tggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 478  Q
    |||||||||| ||||||| ||| |||||||||||||| ||||| ||| || | | | ||  ||||||||| ||||||||||||||||||    
T  10563545 tggaaacagcctatgacatgtccataagctattttcagcttattttcttaagctcttcagcatagcttatgaaaacaacttataactta 10563633  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 387 - 473
Target Start/End: Original strand, 43279512 - 43279599
Alignment:
Q  387 ttatggaaacagcttatgacacgtct-ataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 473  Q
    ||||| |||||||||||||||  | | ||||||| |||||||||||| |||| | ||| ||||  |||||||||||||||||||||||    
T  43279512 ttatgaaaacagcttatgacaattttcataagcttttttcaacttattttcacaagttctccaatatagcttataaaaacaacttata 43279599  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 380 - 473
Target Start/End: Original strand, 41851141 - 41851234
Alignment:
Q  380 aaagaggttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 473  Q
    |||||| ||| ||||||||||||||||| ||| ||||||   |||||  |||| | |||| |||||||| |||||| |||||||| ||||||||    
T  41851141 aaagagcttacggaaacagcttatgacatgtccataagccgatttcactttatctccataagttatccaagatagcatataaaaataacttata 41851234  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 387 - 478
Target Start/End: Complemental strand, 18066215 - 18066123
Alignment:
Q  387 ttatggaaacagcttatgacacgtct-ataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 478  Q
    ||||| |||||||||||||||   || |||||||||||||| ||||| ||| || ||| |||| |||||||||| |||||| |||||| ||||    
T  18066215 ttatgaaaacagcttatgacattgctcataagctattttcaccttattttcttaagttctccaagatagcttatgaaaacagcttatagctta 18066123  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 413 - 473
Target Start/End: Complemental strand, 26202088 - 26202028
Alignment:
Q  413 ataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 473  Q
    ||||||| |||||||||||| |||||| ||| ||||  ||| |||||||||||||||||||    
T  26202088 ataagcttttttcaacttattttcataagttctccaatatatcttataaaaacaacttata 26202028  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 402 - 478
Target Start/End: Complemental strand, 39983413 - 39983337
Alignment:
Q  402 atgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 478  Q
    |||||| ||||||||||||||||||  |||| |||||  | | |||| |||||||||| ||||||||||||| ||||    
T  39983413 atgacatgtctataagctattttcagtttattttcattagctctccaggatagcttatgaaaacaacttatagctta 39983337  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 413 - 475
Target Start/End: Complemental strand, 12289857 - 12289795
Alignment:
Q  413 ataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataac 475  Q
    ||||||| |||||||||||| |||||| ||| ||||  |||  ||||||||||||||||||||    
T  12289857 ataagcttttttcaacttattttcataagttctccaatataaattataaaaacaacttataac 12289795  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 478
Target Start/End: Complemental strand, 34102098 - 34102013
Alignment:
Q  393 aaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 478  Q
    ||||||||||| ||| ||  |||  |||||||||||||||  || ||   |||||| |||||||||||||||||||| ||||||||    
T  34102098 aaacagcttataacatgtacatactctattttcaacttattctcgtaaactatccaggatagcttataaaaacaactaataactta 34102013  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 464
Target Start/End: Original strand, 34652020 - 34652097
Alignment:
Q  387 ttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaa 464  Q
    |||| |||||| ||||||||| ||| ||||||| |||||||||||| | |||| | | |||| |||||||||| ||||    
T  34652020 ttatagaaacaacttatgacatgtccataagctgttttcaacttatttccataagctctccaagatagcttatgaaaa 34652097  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 382 - 478
Target Start/End: Original strand, 1742011 - 1742107
Alignment:
Q  382 agaggttatggaaacagcttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 478  Q
    |||| ||||||||||| ||||||||| ||  ||||||||| |||||||||| | ||||   | | |||||||| |||| |||||| |||||| ||||    
T  1742011 agagcttatggaaacaacttatgacatgtgcataagctatcttcaacttatttccataaactcttcatgatagattatgaaaacagcttatatctta 1742107  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 450 - 478
Target Start/End: Original strand, 7751488 - 7751516
Alignment:
Q  450 gatagcttataaaaacaacttataactta 478  Q
    |||||||||||||||||||||||||||||    
T  7751488 gatagcttataaaaacaacttataactta 7751516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 422 - 478
Target Start/End: Complemental strand, 9478003 - 9477947
Alignment:
Q  422 tttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 478  Q
    ||||||||||| ||||||   | |||| |||||||||| ||||||||||||||||||    
T  9478003 tttcaacttattttcataacctctccaggatagcttatgaaaacaacttataactta 9477947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 388 - 424
Target Start/End: Complemental strand, 15377851 - 15377815
Alignment:
Q  388 tatggaaacagcttatgacacgtctataagctatttt 424  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  15377851 tatggaaacaacttatgacacgtccataagctatttt 15377815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 421 - 473
Target Start/End: Complemental strand, 20952407 - 20952355
Alignment:
Q  421 ttttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 473  Q
    |||||||||||| |||||| ||| ||||  |||||| ||||||||||||||||    
T  20952407 ttttcaacttattttcataagttctccaatatagctaataaaaacaacttata 20952355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 387 - 439
Target Start/End: Original strand, 32106783 - 32106835
Alignment:
Q  387 ttatggaaacagcttatgacacgtctataagctattttcaacttatgttcata 439  Q
    ||||| |||||||||||||||  ||| |||||| ||||||| |||||||||||    
T  32106783 ttatgaaaacagcttatgacatatctgtaagctgttttcaaattatgttcata 32106835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 413 - 473
Target Start/End: Complemental strand, 32592646 - 32592586
Alignment:
Q  413 ataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 473  Q
    ||||||| || ||||||||| |||||| ||| ||||  || ||||||||||||||||||||    
T  32592646 ataagcttttctcaacttattttcataagttctccaatattgcttataaaaacaacttata 32592586  T

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Target: scaffold0045 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 505 - 562
Target Start/End: Original strand, 84690 - 84747
Alignment:
Q  505 ggttttctggtaagtagtagtgaaacaatatagctattttcatattaataaacttatt 562  Q
    |||||||| ||||||| |||||||| |||| ||||| | |||||||||||||||||||    
T  84690 ggttttctcgtaagtattagtgaaataatagagctagtgtcatattaataaacttatt 84747  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 387 - 432
Target Start/End: Original strand, 29768623 - 29768668
Alignment:
Q  387 ttatggaaacagcttatgacacgtctataagctattttcaacttat 432  Q
    ||||| |||| |||||||||| ||||||||||||||||||||||||    
T  29768623 ttatgaaaacggcttatgacatgtctataagctattttcaacttat 29768668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 423 - 473
Target Start/End: Original strand, 19022605 - 19022655
Alignment:
Q  423 ttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 473  Q
    |||||||||| |||||| ||| ||||  |||||||||||||||||||||||    
T  19022605 ttcaacttattttcataagttctccaatatagcttataaaaacaacttata 19022655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 478
Target Start/End: Complemental strand, 44822011 - 44821954
Alignment:
Q  421 ttttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 478  Q
    |||||||||||| |||||| ||| ||||  ||||||||| |||||| |||||||||||    
T  44822011 ttttcaacttattttcataagttctccagaatagcttatgaaaacagcttataactta 44821954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 464
Target Start/End: Complemental strand, 45078352 - 45078287
Alignment:
Q  399 cttatgacacgtctataagctattttcaacttatgttcataggttatccatgatagcttataaaaa 464  Q
    ||||||||| ||| ||||||| |||||||||||| | || | ||||||| ||||||||||| ||||    
T  45078352 cttatgacatgtccataagctgttttcaacttatttccacaagttatccgtgatagcttatgaaaa 45078287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 478
Target Start/End: Original strand, 45790443 - 45790500
Alignment:
Q  421 ttttcaacttatgttcataggttatccatgatagcttataaaaacaacttataactta 478  Q
    |||||| ||||| |||||| ||||||||  |||| |||||||||||||||||| ||||    
T  45790443 ttttcagcttattttcataagttatccaatatagtttataaaaacaacttatagctta 45790500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 474
Target Start/End: Original strand, 47130803 - 47130856
Alignment:
Q  421 ttttcaacttatgttcataggttatccatgatagcttataaaaacaacttataa 474  Q
    |||||||||||| |||| | ||| |||| |||||||||| ||||||||||||||    
T  47130803 ttttcaacttattttcacaagttctccaagatagcttatgaaaacaacttataa 47130856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 450 - 478
Target Start/End: Complemental strand, 32210290 - 32210262
Alignment:
Q  450 gatagcttataaaaacaacttataactta 478  Q
    |||||||||||||||||||||||||||||    
T  32210290 gatagcttataaaaacaacttataactta 32210262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 363 - 431
Target Start/End: Complemental strand, 44687040 - 44686972
Alignment:
Q  363 atttgttagattgctttaaagaggttatggaaacagcttatgacacgtctataagctattttcaactta 431  Q
    |||||| ||| | ||| |||||| ||||||||||| ||||||||| ||| || |||| |||||||||||    
T  44687040 atttgtgagacttcttaaaagagcttatggaaacaacttatgacatgtccatgagctgttttcaactta 44686972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 413 - 473
Target Start/End: Complemental strand, 48470104 - 48470044
Alignment:
Q  413 ataagctattttcaacttatgttcataggttatccatgatagcttataaaaacaacttata 473  Q
    ||||||| |||| | |||||||||||| ||||| ||  ||||||||| |||||||||||||    
T  48470104 ataagcttttttgagcttatgttcataagttattcaaaatagcttatgaaaacaacttata 48470044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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