View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4755-Insertion-4 (Length: 598)
Name: NF4755-Insertion-4
Description: NF4755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4755-Insertion-4 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 260 - 598
Target Start/End: Original strand, 45000041 - 45000380
Alignment:
| Q |
260 |
agccgcaaaacttctagcaaccaaagcaaataatagtatattttatatggaaaaaataactactggtatatataaaaaaggagtacttggtaaaataatt |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
45000041 |
agccgcaaaacttctagcaaccaaagcaaataatagtatattttatatggaaaaaataactactggtatatatataaagggagtacttggtaaaataatt |
45000140 |
T |
|
| Q |
360 |
tgagacttttaataattgaatttgtattttttgttgaagcagatatgtaatattgtgttttttgtgaagacaaatttgaactattattcaaattaataat |
459 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
45000141 |
tgagacttttaataatcgaatttgtattttttgttgaagcagatatgtaatattgtgttttttgtgaagacaaacttgaactattattcaaattaataat |
45000240 |
T |
|
| Q |
460 |
gttgaatgactccaaaaaatcatatatttaactgtgaagtggctttctggataacaagtttacctagtcctgttgaaagc-aagctcgtaacaaggtgca |
558 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
45000241 |
gttgaatgactccaaaaaatcatatatttaactgtgaagtggctttctggataacaagtttacctagtcctgttgaaagcaaagctcgtaacaaggtgca |
45000340 |
T |
|
| Q |
559 |
ttagtgagatatactgtatgctataggaatgaagacctat |
598 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45000341 |
ttagtgagatatactgtatgctataggaatgaagacctat |
45000380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 7 - 202
Target Start/End: Original strand, 44999800 - 44999983
Alignment:
| Q |
7 |
agtatattctaagcatagttttaaattgtggtcaacaacgtcgtaactcaatttaaaaccaacnnnnnnngcatgaaaaatatcatatacctgaaaatat |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
44999800 |
agtatattctaagcatagttttaaattgtggtcaacaacgtcgtaactcaatttaaaaccaactttttt-----------ta-catatacctgaaaatat |
44999887 |
T |
|
| Q |
107 |
cccaagctgtagttaaatcaggatcagatggtggaaattgatctttagctagaaggttgcgatatactggacctacagatagcttgccatttttgc |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44999888 |
cccaagctgtagttaaatcaggatcagatggtggaaattgatctttagctagaaggttgcgatatactggacctacagatagcttgccatttttgc |
44999983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University