View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4755_low_1 (Length: 610)
Name: NF4755_low_1
Description: NF4755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4755_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 9 - 591
Target Start/End: Original strand, 45128870 - 45129452
Alignment:
| Q |
9 |
agcacagaggaaatgcaaacatcaagagtgacatcatatttgtccacaaatctactagtttctttactcaccaatcccataacctttgaacaaagaggtg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45128870 |
agcacagaggaaatgcaaacatcaagagtgacatcatatttgtccacaaatctactagtttctttactcaccaatcccataacctttgaacaaagaggtg |
45128969 |
T |
|
| Q |
109 |
aaactgagtctctattgtactcacttacataacgagagtaattacacactctagtgaacatgttgtaagttgcatctgatattagtccatgtgaccaaaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45128970 |
aaactgagtctctattgtactcacttacataacgagagtaattacacactctagtgaacatgttgtaagttgcatctgatattagtccatgtgaccaaaa |
45129069 |
T |
|
| Q |
209 |
gaattcagcccttgaattgaaatcagttgcatattctagaactggatttcccaactgcaattcaactttggtatcaacagctagcaaattgtatggaatn |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45129070 |
gaattcagcccttgaattgaaatcagttgcatattctagaactggatttcccaactgcaattcaactttggtatcaacagctagcaaattgtatggaata |
45129169 |
T |
|
| Q |
309 |
nnnnnnntcatcaatgtagcattacttaccgctatacctttaaggttgaatatcttgtttcttttgttcatttcaatcataagctttgcaagttgaggaa |
408 |
Q |
| |
|
||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45129170 |
aaaaaaatcatcaatgtagccttacttacggctatgcctttaaggttgaatatcttgtttcttttgttcatttcaatcataagctttgcaagttgaggaa |
45129269 |
T |
|
| Q |
409 |
cataatgacctgaaatacatgcataaattttattaattagtaatgattgatgtaacatgtttcaaaaagcagtaaaggtgacaagtttacctgcataact |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45129270 |
cataatgacctgaaatacatgcataaattttattaattagtaatgattgatgtaacatgtttcaaaaagcagtaaaggtgacaagtttacctgcataact |
45129369 |
T |
|
| Q |
509 |
ttcaccagttagaaacaaatctctgtttctatattgaggaaacttgttgaaccaacgttccaagaatacaagattgtcccttg |
591 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45129370 |
ttcaccagttagaaacaaatctctgtttctatattgaggaaacttgttgaaccaacgttccaagaatacaagattgtcccttg |
45129452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 9 - 269
Target Start/End: Original strand, 40280725 - 40280985
Alignment:
| Q |
9 |
agcacagaggaaatgcaaacatcaagagtgacatcatatttgtccacaaatctactagtttctttactcaccaatcccataacctttgaacaaagaggtg |
108 |
Q |
| |
|
||||| ||||||||||| |||||||| || |||||||||||||||||||| | || |||||| | || || | ||| |||||||||||||| | | |
|
|
| T |
40280725 |
agcactgaggaaatgcatacatcaagggtaacatcatatttgtccacaaacttgctggtttctctgcttacttggctcatgacctttgaacaaagcaggg |
40280824 |
T |
|
| Q |
109 |
aaactgagtctctattgtactcacttacataacgagagtaattacacactctagtgaacatgttgtaagttgcatctgatattagtccatgtgaccaaaa |
208 |
Q |
| |
|
||| |||| ||||| ||||||||||||||| | || ||||| || || |||||||| |||||||||| ||||||||| | |||||| ||||| || |
|
|
| T |
40280825 |
aaatggagtttctatagtactcacttacatactgcgaataattgcagcctgcggtgaacattttgtaagttgaatctgatatcaatccatgagaccagaa |
40280924 |
T |
|
| Q |
209 |
gaattcagcccttgaattgaaatcagttgcatattctagaactggatttcccaactgcaat |
269 |
Q |
| |
|
||| ||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
40280925 |
gaactcagcccttgaattgaagtcagtggcatattctagaagtggatttcccaactgcaat |
40280985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 495 - 589
Target Start/End: Original strand, 40281445 - 40281539
Alignment:
| Q |
495 |
ttacctgcataactttcaccagttagaaacaaatctctgtttctatattgaggaaacttgttgaaccaacgttccaagaatacaagattgtccct |
589 |
Q |
| |
|
||||||||||||||||| || || | |||||||||| ||| | | ||||| || ||||||||||||||| || |||||| ||||| |||||||| |
|
|
| T |
40281445 |
ttacctgcataactttctcctgtcaaaaacaaatctgtgtgtttgtattgggggaacttgttgaaccaatgtagcaagaacacaaggttgtccct |
40281539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 256
Target Start/End: Original strand, 6632284 - 6632346
Alignment:
| Q |
194 |
tccatgtgaccaaaagaattcagcccttgaattgaaatcagttgcatattctagaactggatt |
256 |
Q |
| |
|
|||||| ||||||||||| ||||| |||||||| ||||| |||||| |||||| ||||||||| |
|
|
| T |
6632284 |
tccatgagaccaaaagaactcagctcttgaattaaaatctgttgcaaattctaaaactggatt |
6632346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 6632101 - 6632166
Alignment:
| Q |
11 |
cacagaggaaatgcaaacatcaagagtgacatcatatttgtccacaaatctactagtttctttact |
76 |
Q |
| |
|
|||||| || || ||||||||||||||||||||||| ||||| |||||||| || |||||| |||| |
|
|
| T |
6632101 |
cacagaagatatacaaacatcaagagtgacatcatacttgtcaacaaatctgcttgtttctgtact |
6632166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University