View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4755_low_4 (Length: 254)
Name: NF4755_low_4
Description: NF4755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4755_low_4 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 113 - 254
Target Start/End: Complemental strand, 44999716 - 44999581
Alignment:
| Q |
113 |
aaattgaccctttctattatgatatgatatgattgtagtgtggcagccaaaaagtatcctcaaaaccgtatgttgggatggcgtgaatttgttgatggaa |
212 |
Q |
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| T |
44999716 |
aaattgaccctttctat---gatatgatatgattgtagtgtggcagccaaaaagtatcctcaaaaccgtatgttgggatggcgtgaatttgttgatggaa |
44999620 |
T |
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| Q |
213 |
aggtatttttatgatgacagtcagtccattttattttgtgtt |
254 |
Q |
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| T |
44999619 |
aggtattttt---atgacagacagtccattttattttgtgtt |
44999581 |
T |
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Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 44999806 - 44999751
Alignment:
| Q |
18 |
atatactataaattgatcaaagagtaatgataattaactttcctaatgagcttcct |
73 |
Q |
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| T |
44999806 |
atatactataaattgatcaaagagtaatgataattaactttcctaatgagcttcct |
44999751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 38764175 - 38764223
Alignment:
| Q |
168 |
atcctcaaaaccgtatgttgggatggcgtgaatttgttgatggaaaggt |
216 |
Q |
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| T |
38764175 |
atcctcaaaaccgcatgcttggatggcgtaaaattgttgatggaaaggt |
38764223 |
T |
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