View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4755_low_6 (Length: 239)

Name: NF4755_low_6
Description: NF4755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4755_low_6
NF4755_low_6
[»] chr7 (5 HSPs)
chr7 (92-231)||(5737178-5737322)
chr7 (92-192)||(5769254-5769359)
chr7 (92-140)||(23525582-23525631)
chr7 (153-231)||(12629337-12629416)
chr7 (92-138)||(6591270-6591316)
[»] chr1 (14 HSPs)
chr1 (92-231)||(17242012-17242156)
chr1 (153-231)||(9010966-9011044)
chr1 (153-229)||(24302999-24303075)
chr1 (92-192)||(9008762-9008865)
chr1 (92-140)||(9011063-9011110)
chr1 (153-192)||(17240784-17240823)
chr1 (177-231)||(13970040-13970094)
chr1 (92-141)||(24304310-24304358)
chr1 (92-124)||(48030257-48030289)
chr1 (94-124)||(43402266-43402296)
chr1 (92-140)||(17240718-17240767)
chr1 (92-124)||(24302937-24302969)
chr1 (179-211)||(48030165-48030197)
chr1 (92-140)||(51676340-51676388)
[»] chr8 (9 HSPs)
chr8 (158-229)||(40463515-40463586)
chr8 (153-231)||(9310831-9310909)
chr8 (92-140)||(38973754-38973802)
chr8 (92-140)||(39004852-39004900)
chr8 (92-124)||(14099746-14099778)
chr8 (92-140)||(42480899-42480947)
chr8 (92-123)||(3917797-3917828)
chr8 (177-231)||(38973842-38973897)
chr8 (177-231)||(39004940-39004995)
[»] scaffold0262 (1 HSPs)
scaffold0262 (158-229)||(4293-4364)
[»] chr3 (8 HSPs)
chr3 (158-229)||(11150344-11150415)
chr3 (88-140)||(42277228-42277280)
chr3 (153-213)||(51832437-51832497)
chr3 (178-231)||(52043333-52043386)
chr3 (177-231)||(39605670-39605725)
chr3 (90-140)||(39605582-39605631)
chr3 (177-231)||(54672720-54672774)
chr3 (92-140)||(15438471-15438520)
[»] chr4 (7 HSPs)
chr4 (153-229)||(47862000-47862076)
chr4 (90-140)||(56083353-56083403)
chr4 (153-192)||(44355359-44355398)
chr4 (177-231)||(47378639-47378693)
chr4 (94-124)||(47861936-47861966)
chr4 (178-231)||(52706704-52706757)
chr4 (92-124)||(12861413-12861445)
[»] scaffold0049 (1 HSPs)
scaffold0049 (92-124)||(3943-3975)
[»] scaffold0484 (1 HSPs)
scaffold0484 (92-123)||(11537-11568)
[»] chr6 (4 HSPs)
chr6 (92-123)||(12603938-12603969)
chr6 (92-123)||(25483421-25483452)
chr6 (92-140)||(6624254-6624301)
chr6 (93-121)||(26545892-26545920)
[»] chr5 (3 HSPs)
chr5 (92-123)||(29875948-29875979)
chr5 (92-140)||(12316349-12316397)
chr5 (92-124)||(27491295-27491327)
[»] chr2 (1 HSPs)
chr2 (92-139)||(29042337-29042384)
[»] scaffold0071 (1 HSPs)
scaffold0071 (92-140)||(23671-23720)
[»] scaffold0197 (1 HSPs)
scaffold0197 (92-124)||(28784-28816)


Alignment Details
Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 92 - 231
Target Start/End: Original strand, 5737178 - 5737322
Alignment:
Q  92 ggttaataggcttttaccccc-tgccatttggggactttttggtataccc---tgtcnnnnnnnn-cttgtagattcccccttaccattagaagattctt 186  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||   ||||         ||||||||||||||||| ||||||||||||||||    
T  5737178 ggttaataggcttttacccccctgccatttgggggctttttggtatacccccctgtcaaaaaaaaacttgtagattcccccttgccattagaagattctt 5737277  T
Q  187 tggtttacacccccaagccatctgactagattaatgtgatgatgt 231  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  5737278 tggtttacacccccaaaccatctgactagattaatgtgatgatgt 5737322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 192
Target Start/End: Complemental strand, 5769359 - 5769254
Alignment:
Q  92 ggttaataggcttttaccccc-tgccatttggggactttttggtata---ccctgtc-nnnnnnnncttgtagattcccccttaccattagaagattctt 186  Q
    ||||||||||||||||||||| ||||||||||||   ||||||||||   |||||||         ||||||||||||||||| ||||||||||||||||    
T  5769359 ggttaataggcttttacccccctgccatttgggggtcttttggtatacccccctgtcaaaaaaaaacttgtagattcccccttgccattagaagattctt 5769260  T
Q  187 tggttt 192  Q
    ||||||    
T  5769259 tggttt 5769254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 23525582 - 23525631
Alignment:
Q  92 ggttaataggcttttacccc-ctgccatttggggactttttggtataccc 140  Q
    |||||||||||||||||||| |||||||||||||  ||||||||||||||    
T  23525582 ggttaataggcttttaccccgctgccatttgggggatttttggtataccc 23525631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 231
Target Start/End: Complemental strand, 12629416 - 12629337
Alignment:
Q  153 cttgtagattcccccttaccattagaagattctttggtttacaccccca-agccatctgactagattaatgtgatgatgt 231  Q
    |||| |||||||||||| ||||||  |||||||||||||||| |||| |  ||||||||||| ||| |||| ||||||||    
T  12629416 cttgaagattcccccttgccattattagattctttggtttacccccctagcgccatctgactggataaatgggatgatgt 12629337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 6591270 - 6591316
Alignment:
Q  92 ggttaataggcttttaccccctgccatttggggactttttggtatac 138  Q
    ||||||||||||||||||||||||||||||| |   |||||||||||    
T  6591270 ggttaataggcttttaccccctgccatttggtggtattttggtatac 6591316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 92 - 231
Target Start/End: Complemental strand, 17242156 - 17242012
Alignment:
Q  92 ggttaataggcttttaccccc-tgccatttggggactttttggtataccc---tgtcnnnnnnnn-cttgtagattcccccttaccattagaagattctt 186  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||   ||||         ||||||||||||||||| ||||||||||||||||    
T  17242156 ggttaataggcttttacccccctgccatttgggggctttttggtatacccccctgtcaaaaaaaaacttgtagattcccccttgccattagaagattctt 17242057  T
Q  187 tggtttacacccccaagccatctgactagattaatgtgatgatgt 231  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  17242056 tggtttacacccccaaaccatctgactagattaatgtgatgatgt 17242012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 153 - 231
Target Start/End: Complemental strand, 9011044 - 9010966
Alignment:
Q  153 cttgtagattcccccttaccattagaagattctttggtttacacccccaagccatctgactagattaatgtgatgatgt 231  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  9011044 cttgtagatttccccttgccattagaagattctttggtttacacccccaaaccatctgactggattaatgtgatgatgt 9010966  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 153 - 229
Target Start/End: Original strand, 24302999 - 24303075
Alignment:
Q  153 cttgtagattcccccttaccattagaagattctttggtttacacccccaagccatctgactagattaatgtgatgat 229  Q
    |||| |||||||||||| | |||||||||||||||| ||||||||| |||||||||||| | |||||||||||||||    
T  24302999 cttggagattcccccttgcaattagaagattctttgatttacaccctcaagccatctgaatggattaatgtgatgat 24303075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 92 - 192
Target Start/End: Original strand, 9008762 - 9008865
Alignment:
Q  92 ggttaataggcttttaccccctgccatttggggactttttggtata--ccctgtc-nnnnnnnncttgtagattcccccttaccattagaagattctttg 188  Q
    |||||||||||||||||||||||||||||||||   ||||||||||  |||||||         ||||||||||||||||| ||||||||||||||||||    
T  9008762 ggttaataggcttttaccccctgccatttgggggtcttttggtataccccctgtcaaaaaaaaacttgtagattcccccttgccattagaagattctttg 9008861  T
Q  189 gttt 192  Q
    ||||    
T  9008862 gttt 9008865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 9011110 - 9011063
Alignment:
Q  92 ggttaataggcttttaccccctgccatttggggactttttggtataccc 140  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||    
T  9011110 ggttaataggtttttaccccctgccatttgggg-ctttttggtataccc 9011063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 192
Target Start/End: Original strand, 17240784 - 17240823
Alignment:
Q  153 cttgtagattcccccttaccattagaagattctttggttt 192  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  17240784 cttgtagattcccccttgccattagaagattctttggttt 17240823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 13970040 - 13970094
Alignment:
Q  177 gaagattctttggtttacacccccaagccatctgactagattaatgtgatgatgt 231  Q
    ||||||||||||||||| |||||||| |||| ||||| |||||||| ||||||||    
T  13970040 gaagattctttggtttatacccccaaaccatatgactggattaatgagatgatgt 13970094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 141
Target Start/End: Complemental strand, 24304358 - 24304310
Alignment:
Q  92 ggttaataggcttttaccccctgccatttggggactttttggtataccct 141  Q
    |||||||||| ||||||||||||||||||||||| |||||||| ||||||    
T  24304358 ggttaataggtttttaccccctgccatttgggga-tttttggtttaccct 24304310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 124
Target Start/End: Complemental strand, 48030289 - 48030257
Alignment:
Q  92 ggttaataggcttttaccccctgccatttgggg 124  Q
    |||||||||||||||||||||||||||||||||    
T  48030289 ggttaataggcttttaccccctgccatttgggg 48030257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 124
Target Start/End: Original strand, 43402266 - 43402296
Alignment:
Q  94 ttaataggcttttaccccctgccatttgggg 124  Q
    |||||||||||||||||||||||||||||||    
T  43402266 ttaataggcttttaccccctgccatttgggg 43402296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 17240718 - 17240767
Alignment:
Q  92 ggttaataggctttta-ccccctgccatttggggactttttggtataccc 140  Q
    |||||||||||||||| |||||||||||||||||   |||||||||||||    
T  17240718 ggttaataggcttttacccccctgccatttgggggtcttttggtataccc 17240767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 124
Target Start/End: Original strand, 24302937 - 24302969
Alignment:
Q  92 ggttaataggcttttaccccctgccatttgggg 124  Q
    |||||||||| ||||||||||||||||||||||    
T  24302937 ggttaataggattttaccccctgccatttgggg 24302969  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 48030197 - 48030165
Alignment:
Q  179 agattctttggtttacacccccaagccatctga 211  Q
    ||||||||||||||||||||||| |||||||||    
T  48030197 agattctttggtttacacccccaggccatctga 48030165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 51676388 - 51676340
Alignment:
Q  92 ggttaataggcttttaccccctgccatttggggactttttggtataccc 140  Q
    ||||||||| |||||||||||||| ||||||||   |||||||||||||    
T  51676388 ggttaatagacttttaccccctgctatttgggggtcttttggtataccc 51676340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 158 - 229
Target Start/End: Complemental strand, 40463586 - 40463515
Alignment:
Q  158 agattcccccttaccattagaagattctttggtttacacccccaagccatctgactagattaatgtgatgat 229  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||| |||||||    
T  40463586 agattcccccttaccattagaagattctttgatttacacccccaagccatctgattggattaatatgatgat 40463515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 153 - 231
Target Start/End: Complemental strand, 9310909 - 9310831
Alignment:
Q  153 cttgtagattcccccttaccattagaagattctttggtttacacccccaagccatctgactagattaatgtgatgatgt 231  Q
    |||| |||||||||||| |||| |||||||||| ||||| |||||||||||| || ||| | |||||||| ||||||||    
T  9310909 cttggagattcccccttgccatgagaagattctctggttcacacccccaagctatatgaatggattaatgagatgatgt 9310831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 38973754 - 38973802
Alignment:
Q  92 ggttaataggcttttaccccctgccatttggggactttttggtataccc 140  Q
    |||||||||| ||||||||||||||||||||||  ||||||||||||||    
T  38973754 ggttaataggtttttaccccctgccatttgggggttttttggtataccc 38973802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 39004852 - 39004900
Alignment:
Q  92 ggttaataggcttttaccccctgccatttggggactttttggtataccc 140  Q
    |||||||||| ||||||||||||||||||||||  ||||||||||||||    
T  39004852 ggttaataggtttttaccccctgccatttgggggttttttggtataccc 39004900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 124
Target Start/End: Original strand, 14099746 - 14099778
Alignment:
Q  92 ggttaataggcttttaccccctgccatttgggg 124  Q
    |||||||||||||||||||||||||||||||||    
T  14099746 ggttaataggcttttaccccctgccatttgggg 14099778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 42480899 - 42480947
Alignment:
Q  92 ggttaataggcttttaccccctgccatttggggactttttggtataccc 140  Q
    ||||||||||||||||||||||||||||| |||  |||||||| |||||    
T  42480899 ggttaataggcttttaccccctgccatttaggggttttttggtttaccc 42480947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 123
Target Start/End: Original strand, 3917797 - 3917828
Alignment:
Q  92 ggttaataggcttttaccccctgccatttggg 123  Q
    ||||||||||||||||||||||||||||||||    
T  3917797 ggttaataggcttttaccccctgccatttggg 3917828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 38973842 - 38973897
Alignment:
Q  177 gaagattctttggtttaca-cccccaagccatctgactagattaatgtgatgatgt 231  Q
    ||||||||||||||||||| ||||||| |||| |||||||||||||  ||||||||    
T  38973842 gaagattctttggtttacaccccccaaaccatatgactagattaataggatgatgt 38973897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 39004940 - 39004995
Alignment:
Q  177 gaagattctttggtttaca-cccccaagccatctgactagattaatgtgatgatgt 231  Q
    ||||||||||||||||||| ||||||| |||| |||||||||||||  ||||||||    
T  39004940 gaagattctttggtttacaccccccaaaccatatgactagattaataggatgatgt 39004995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 158 - 229
Target Start/End: Complemental strand, 4364 - 4293
Alignment:
Q  158 agattcccccttaccattagaagattctttggtttacacccccaagccatctgactagattaatgtgatgat 229  Q
    |||||||| ||| ||||||||||||| ||||||||||||||||||||||||||| | ||||||| |||||||    
T  4364 agattccctcttgccattagaagattatttggtttacacccccaagccatctgattggattaatatgatgat 4293  T

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Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 158 - 229
Target Start/End: Original strand, 11150344 - 11150415
Alignment:
Q  158 agattcccccttaccattagaagattctttggtttacacccccaagccatctgactagattaatgtgatgat 229  Q
    |||| ||||||| |||||||||||||| |||||||||||||||||| ||||||| | |||||||||||||||    
T  11150344 agatccccccttgccattagaagattccttggtttacacccccaagtcatctgattggattaatgtgatgat 11150415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 140
Target Start/End: Original strand, 42277228 - 42277280
Alignment:
Q  88 ttatggttaataggcttttaccccctgccatttggggactttttggtataccc 140  Q
    ||||||||||||||||||||||||||||||||||||   ||||||||||||||    
T  42277228 ttatggttaataggcttttaccccctgccatttgggttttttttggtataccc 42277280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 213
Target Start/End: Complemental strand, 51832497 - 51832437
Alignment:
Q  153 cttgtagattcccccttaccattagaagattctttggtttacacccccaagccatctgact 213  Q
    ||||||||||| |||||  |||||||||||||||| ||| ||||||||||||||| |||||    
T  51832497 cttgtagattctcccttgtcattagaagattctttagttaacacccccaagccatatgact 51832437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 52043386 - 52043333
Alignment:
Q  178 aagattctttggtttacacccccaagccatctgactagattaatgtgatgatgt 231  Q
    |||||| ||||||||||||||||||| ||||||||| ||| |||| ||||||||    
T  52043386 aagattatttggtttacacccccaagtcatctgactggatcaatgagatgatgt 52043333  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 39605670 - 39605725
Alignment:
Q  177 gaagattctttggtttaca-cccccaagccatctgactagattaatgtgatgatgt 231  Q
    ||||||||||||||||||| ||||||| |||| ||||| |||||||| ||||||||    
T  39605670 gaagattctttggtttacaccccccaaaccatatgactggattaatgggatgatgt 39605725  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 39605582 - 39605631
Alignment:
Q  90 atggttaataggcttttaccccctgccatttggggactttttggtataccc 140  Q
    |||||||||||||||||| ||||||||||||||||  |||||||| |||||    
T  39605582 atggttaataggctttta-cccctgccatttgggggttttttggtgtaccc 39605631  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 54672720 - 54672774
Alignment:
Q  177 gaagattctttggtttacacccccaagccatctgactagattaatgtgatgatgt 231  Q
    |||||||||||| ||||||||| ||| |||| ||||| |||||||| ||||||||    
T  54672720 gaagattctttgatttacaccctcaaaccatatgactggattaatgggatgatgt 54672774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 15438471 - 15438520
Alignment:
Q  92 ggttaataggctttta-ccccctgccatttggggactttttggtataccc 140  Q
    |||||||||||||||| |||||||||||||| ||  ||||||||||||||    
T  15438471 ggttaataggcttttacccccctgccatttgagggttttttggtataccc 15438520  T

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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 153 - 229
Target Start/End: Original strand, 47862000 - 47862076
Alignment:
Q  153 cttgtagattcccccttaccattagaagattctttggtttacacccccaagccatctgactagattaatgtgatgat 229  Q
    |||| |||| ||||||| ||||||||||||||||||||||||||| |||| |||||||| | |||||||||| ||||    
T  47862000 cttggagatccccccttgccattagaagattctttggtttacacctccaaaccatctgattggattaatgtggtgat 47862076  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 56083353 - 56083403
Alignment:
Q  90 atggttaataggcttttaccccctgccatttggggactttttggtataccc 140  Q
    |||||||||||||||||||||||||||||||||||   |||||||||||||    
T  56083353 atggttaataggcttttaccccctgccatttgggggtcttttggtataccc 56083403  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 192
Target Start/End: Complemental strand, 44355398 - 44355359
Alignment:
Q  153 cttgtagattcccccttaccattagaagattctttggttt 192  Q
    ||||||||||||||||| | ||||||||||||||||||||    
T  44355398 cttgtagattcccccttgctattagaagattctttggttt 44355359  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 231
Target Start/End: Complemental strand, 47378693 - 47378639
Alignment:
Q  177 gaagattctttggtttacacccccaagccatctgactagattaatgtgatgatgt 231  Q
    ||||||||||||||| | |||||||||| || ||||| |||||||| ||||||||    
T  47378693 gaagattctttggttcatacccccaagctatatgactggattaatgagatgatgt 47378639  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 124
Target Start/End: Original strand, 47861936 - 47861966
Alignment:
Q  94 ttaataggcttttaccccctgccatttgggg 124  Q
    |||||||||||||||||||||||||||||||    
T  47861936 ttaataggcttttaccccctgccatttgggg 47861966  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 52706757 - 52706704
Alignment:
Q  178 aagattctttggtttacacccccaagccatctgactagattaatgtgatgatgt 231  Q
    |||||| ||||||||||||| ||||||||||||||| ||| ||||  |||||||    
T  52706757 aagattatttggtttacacctccaagccatctgactggatcaatgaaatgatgt 52706704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 124
Target Start/End: Original strand, 12861413 - 12861445
Alignment:
Q  92 ggttaataggcttttaccccctgccatttgggg 124  Q
    |||||||||||||||||||||||| ||||||||    
T  12861413 ggttaataggcttttaccccctgctatttgggg 12861445  T

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Target: scaffold0049 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 124
Target Start/End: Complemental strand, 3975 - 3943
Alignment:
Q  92 ggttaataggcttttaccccctgccatttgggg 124  Q
    |||||||||||||||||||||||||||||||||    
T  3975 ggttaataggcttttaccccctgccatttgggg 3943  T

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Target: scaffold0484 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 123
Target Start/End: Original strand, 11537 - 11568
Alignment:
Q  92 ggttaataggcttttaccccctgccatttggg 123  Q
    ||||||||||||||||||||||||||||||||    
T  11537 ggttaataggcttttaccccctgccatttggg 11568  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 123
Target Start/End: Original strand, 12603938 - 12603969
Alignment:
Q  92 ggttaataggcttttaccccctgccatttggg 123  Q
    ||||||||||||||||||||||||||||||||    
T  12603938 ggttaataggcttttaccccctgccatttggg 12603969  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 123
Target Start/End: Complemental strand, 25483452 - 25483421
Alignment:
Q  92 ggttaataggcttttaccccctgccatttggg 123  Q
    ||||||||||||||||||||||||||||||||    
T  25483452 ggttaataggcttttaccccctgccatttggg 25483421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 6624254 - 6624301
Alignment:
Q  92 ggttaataggcttttaccccctgccatttggggactttttggtataccc 140  Q
    |||||||||| ||||||||| |||||||||||| | |||||||||||||    
T  6624254 ggttaataggtttttaccccttgccatttggggtc-ttttggtataccc 6624301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 121
Target Start/End: Complemental strand, 26545920 - 26545892
Alignment:
Q  93 gttaataggcttttaccccctgccatttg 121  Q
    |||||||||||||||||||||||||||||    
T  26545920 gttaataggcttttaccccctgccatttg 26545892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 123
Target Start/End: Original strand, 29875948 - 29875979
Alignment:
Q  92 ggttaataggcttttaccccctgccatttggg 123  Q
    ||||||||||||||||||||||||||||||||    
T  29875948 ggttaataggcttttaccccctgccatttggg 29875979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 12316349 - 12316397
Alignment:
Q  92 ggttaataggcttttaccccctgccatttggggactttttggtataccc 140  Q
    ||||||||||||||||| ||||||||||||| |   |||||||||||||    
T  12316349 ggttaataggcttttactccctgccatttggaggtcttttggtataccc 12316397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 124
Target Start/End: Complemental strand, 27491327 - 27491295
Alignment:
Q  92 ggttaataggcttttaccccctgccatttgggg 124  Q
    |||||||||||||||||||||||| ||||||||    
T  27491327 ggttaataggcttttaccccctgcaatttgggg 27491295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 139
Target Start/End: Original strand, 29042337 - 29042384
Alignment:
Q  92 ggttaataggcttttaccccctgccatttggggactttttggtatacc 139  Q
    |||||||||||||||||||||||| ||||||||   ||||||||||||    
T  29042337 ggttaataggcttttaccccctgctatttgggggtcttttggtatacc 29042384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 23720 - 23671
Alignment:
Q  92 ggttaataggcttttaccccc-tgccatttggggactttttggtataccc 140  Q
    ||||||||||||||||||||| ||||||||| ||  ||||||||||||||    
T  23720 ggttaataggcttttacccccctgccatttgagggttttttggtataccc 23671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 124
Target Start/End: Original strand, 28784 - 28816
Alignment:
Q  92 ggttaataggcttttaccccctgccatttgggg 124  Q
    ||||||| |||||||||||||||||||||||||    
T  28784 ggttaattggcttttaccccctgccatttgggg 28816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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