View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4756-Insertion-1 (Length: 842)
Name: NF4756-Insertion-1
Description: NF4756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4756-Insertion-1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 751; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 751; E-Value: 0
Query Start/End: Original strand, 8 - 842
Target Start/End: Original strand, 41132373 - 41133190
Alignment:
| Q |
8 |
gctaaacttaaggacaaatttgactctaaaaccaaggctaataaatcagatagttttccttttgtactcaaatgaaacggtgtttttagaatcgggtcca |
107 |
Q |
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| T |
41132373 |
gctaaacttaaggacaaatttgactctaaaaccaaggctaataaatcagatagttttccttttgtactcaaatgaaacggtgtttttagaatcgggtcca |
41132472 |
T |
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| Q |
108 |
actagctagttgaaccgaaacttggttaatctttggagtttcaatcttcattcaggttgattttcaaactcttatagcatcttcaatcacaagcttgtaa |
207 |
Q |
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| T |
41132473 |
actagctagttgaaccgaaacttggttaatctttggagtttcaatcttcattcaggttgattttcaaactcttatagcatcttcaatcacaag------- |
41132565 |
T |
|
| Q |
208 |
ggaaattaagtttgattctataaccactattaaattctcacaccgtcaaatcatacttatactaatacaactcaaacatattttacttcaatgatagaaa |
307 |
Q |
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| T |
41132566 |
----------tttgattctataaccactattaaattctcacaccgtgaaatcatacttatactaatacaactcaaacatattttacttcaatgatagaaa |
41132655 |
T |
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| Q |
308 |
aattaagcaacttttatgaaatacactttaaatattatacacttagacaatccagaaaaagagtcaaatatataatttttacgtaccattgccattgtca |
407 |
Q |
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| T |
41132656 |
aattaagcaacttttatgaaatacactttaaatattagacacttagacaatccagaaaaagagtcaaatatataatttttacgtaccattgccattgtca |
41132755 |
T |
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| Q |
408 |
ttagcccataagacaatgaaaacatatttgagcatggggataagcacaatagtgtagattatgagagacaatactccaagaatgtcatcgttgtttttaa |
507 |
Q |
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| T |
41132756 |
ttagcccataagacgatgaaaacatatttgagcatggggataagcacaatagtgtagattatgagagacaatactccaagaatgtcatcgttgtttttaa |
41132855 |
T |
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| Q |
508 |
tccctttagtgaaagtacttgcatacacataaagtggagatgtaccaatatcaccatatacaattcctatgctttgaaatgccaaactcaatgtcacgct |
607 |
Q |
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| T |
41132856 |
tccctttagcgaaagtacttgcatacacataaagtggagatgtaccaatatcaccatatacaattcctatgctttgaaatgccaaagtcaatgtcacgct |
41132955 |
T |
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| Q |
608 |
ccaacccacctgcatatcacatataattaatttgtcaagaggaaaatattaattcttacatacaatactatatatgaaatatatatgcatgaagaccttg |
707 |
Q |
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| T |
41132956 |
ccaacccacctgcatgtcacatataattaatttgtcaagaggaaaatattaattcttacatacaatactatatatgaaatatatatgcatgaagaccttg |
41133055 |
T |
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| Q |
708 |
gaattgtggtttgcattcatagaaactcttccagcttctaaattgagggagtctacacgacgtagttttgcccatgacacctttcggtctttcagctttt |
807 |
Q |
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| T |
41133056 |
gaattgtggtttgcattcatagaaactcttccagcttctaaattgagggagtctacacgacgtagttttgcccatgacacctttcgatctttcagctttt |
41133155 |
T |
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| Q |
808 |
tctccgtaatctcctttgttgtttctgtctcatcc |
842 |
Q |
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| T |
41133156 |
tctccgtaatctcctttgttgtttctgtctcatcc |
41133190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 534 - 593
Target Start/End: Complemental strand, 7798396 - 7798337
Alignment:
| Q |
534 |
acataaagtggagatgtaccaatatcaccatatacaattcctatgctttgaaatgccaaa |
593 |
Q |
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| T |
7798396 |
acataaagtggagatgttccaatatcaccatatacaactcccaaactttgaaatgccaaa |
7798337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 534 - 593
Target Start/End: Complemental strand, 7817666 - 7817607
Alignment:
| Q |
534 |
acataaagtggagatgtaccaatatcaccatatacaattcctatgctttgaaatgccaaa |
593 |
Q |
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| T |
7817666 |
acataaagtggagatgttccaatatcaccatatacaactcccaaactttgaaatgccaaa |
7817607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 277 - 329
Target Start/End: Original strand, 2875235 - 2875287
Alignment:
| Q |
277 |
actcaaacatattttacttcaatgatagaaaaattaagcaacttttatgaaat |
329 |
Q |
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| T |
2875235 |
actcaagcatatttttcttcaatgataaaataattaagcaacttttataaaat |
2875287 |
T |
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