View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4756-Insertion-11 (Length: 121)

Name: NF4756-Insertion-11
Description: NF4756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4756-Insertion-11
NF4756-Insertion-11
[»] chr7 (3 HSPs)
chr7 (8-121)||(34186432-34186545)
chr7 (38-106)||(11847703-11847771)
chr7 (50-101)||(45828828-45828879)
[»] chr3 (1 HSPs)
chr3 (11-90)||(518345-518424)
[»] chr5 (1 HSPs)
chr5 (35-90)||(26545341-26545396)
[»] chr4 (2 HSPs)
chr4 (11-90)||(367237-367316)
chr4 (35-108)||(14864448-14864521)
[»] chr2 (1 HSPs)
chr2 (38-106)||(15592569-15592637)
[»] chr8 (3 HSPs)
chr8 (38-97)||(14655038-14655097)
chr8 (50-101)||(17009005-17009056)
chr8 (50-101)||(17539894-17539945)


Alignment Details
Target: chr7 (Bit Score: 114; Significance: 3e-58; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 3e-58
Query Start/End: Original strand, 8 - 121
Target Start/End: Complemental strand, 34186545 - 34186432
Alignment:
Q  8 caaatctccttcgacgtccccttattcagaattgtttcaagcacagctcgatcaattgcttgaaagagataattttttgccttcaaatccttcagcttca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34186545 caaatctccttcgacgtccccttattcagaattgtttcaagcacagctcgatcaattgcttgaaagagataattttttgccttcaaatccttcagcttca 34186446  T
Q  108 actcctccaatgtt 121  Q
    ||||||||||||||    
T  34186445 actcctccaatgtt 34186432  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 11847771 - 11847703
Alignment:
Q  38 attgtttcaagcacagctcgatcaattgcttgaaagagataattttttgccttcaaatccttcagcttc 106  Q
    ||||||||||||||| | |||  |||||||||||| || |||||||| |||||||| ||| ||| ||||    
T  11847771 attgtttcaagcacatcacgagaaattgcttgaaaaaggtaatttttggccttcaagtccatcaacttc 11847703  T

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Target: chr7; HSP #3
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 45828828 - 45828879
Alignment:
Q  50 acagctcgatcaattgcttgaaagagataattttttgccttcaaatccttca 101  Q
    ||||| ||||| ||||||||||| | |||||| |||||||||||||| ||||    
T  45828828 acagcacgatctattgcttgaaacaaataattctttgccttcaaatcattca 45828879  T

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Target: chr3 (Bit Score: 44; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 518424 - 518345
Alignment:
Q  11 atctccttcgacgtccccttattcagaattgtttcaagcacagctcgatcaattgcttgaaagagataattttttgcctt 90  Q
    ||||||||||| ||| | || || | |||||||||||||||| |||||||||||||||||||||| | ||||||||||||    
T  518424 atctccttcgatgtctcgttttttaaaattgtttcaagcacaactcgatcaattgcttgaaagaggtgattttttgcctt 518345  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 26545396 - 26545341
Alignment:
Q  35 agaattgtttcaagcacagctcgatcaattgcttgaaagagataattttttgcctt 90  Q
    |||||||||||||||||| | |||  ||||||||||||||| ||||||||||||||    
T  26545396 agaattgtttcaagcacatcacgagaaattgcttgaaagaggtaattttttgcctt 26545341  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 367237 - 367316
Alignment:
Q  11 atctccttcgacgtccccttattcagaattgtttcaagcacagctcgatcaattgcttgaaagagataattttttgcctt 90  Q
    ||||||||||| ||| | || || | |||| ||||||||||| |||||||||||||||||||||| | | ||||||||||    
T  367237 atctccttcgatgtctcgttttttaaaattatttcaagcacaactcgatcaattgcttgaaagaggtgactttttgcctt 367316  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 108
Target Start/End: Complemental strand, 14864521 - 14864448
Alignment:
Q  35 agaattgtttcaagcacagctcgatcaattgcttgaaagagataattttttgccttcaaatccttcagcttcaa 108  Q
    ||||| ||||| || ||| ||||||||||||||||| | | |||||| |||||||| | |||||||||||||||    
T  14864521 agaatggtttcgagaacaactcgatcaattgcttgatacaaataattctttgcctttagatccttcagcttcaa 14864448  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 15592637 - 15592569
Alignment:
Q  38 attgtttcaagcacagctcgatcaattgcttgaaagagataattttttgccttcaaatccttcagcttc 106  Q
    ||||||||||||||| | |||  |||||||||||| || |||||||| |||||||| ||| ||| ||||    
T  15592637 attgtttcaagcacatcacgagaaattgcttgaaaaaggtaatttttggccttcaagtccatcaacttc 15592569  T

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Target: chr8 (Bit Score: 28; Significance: 0.0000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 14655038 - 14655097
Alignment:
Q  38 attgtttcaagcacagctcgatcaattgcttgaaagagataattttttgccttcaaatcc 97  Q
    ||||||| ||||||| | |||  |||||||||||| ||||||||||| || |||||||||    
T  14655038 attgtttgaagcacatcacgagaaattgcttgaaaaagataatttttggctttcaaatcc 14655097  T

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Target: chr8; HSP #2
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 101
Target Start/End: Complemental strand, 17009056 - 17009005
Alignment:
Q  50 acagctcgatcaattgcttgaaagagataattttttgccttcaaatccttca 101  Q
    ||||| ||||| ||||||||||| | |||||| |||||||||||||| ||||    
T  17009056 acagcacgatctattgcttgaaacaaataattctttgccttcaaatcattca 17009005  T

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Target: chr8; HSP #3
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 17539894 - 17539945
Alignment:
Q  50 acagctcgatcaattgcttgaaagagataattttttgccttcaaatccttca 101  Q
    ||||| ||||| ||||||||||| | |||||| |||||||||||||| ||||    
T  17539894 acagcacgatctattgcttgaaacaaataattctttgccttcaaatcattca 17539945  T

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