View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4756-Insertion-2 (Length: 487)
Name: NF4756-Insertion-2
Description: NF4756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4756-Insertion-2 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 8 - 487
Target Start/End: Original strand, 30122843 - 30123320
Alignment:
| Q |
8 |
tcagtgtcaccagagaatgaaaggaaagactctatacacggttatttcagatggatatgtttcgaaataattcatgctgttgatctgagataagatgact |
107 |
Q |
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| T |
30122843 |
tcagtgtcaccagagaatgaaagcaaagactctatacacggttatttcagatggatatgtttcaaaataattcatgctgttgatctgagataagatgaat |
30122942 |
T |
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| Q |
108 |
actttgacaaaagtttctatttggttcctgtcaagctgtttcgactttttaactgcaattatggttccttccagtaacattattactttatataccgcgc |
207 |
Q |
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| T |
30122943 |
actttgacaaaagcttctatttggttcctgtcaagctgtttcgactttttaactgcaattatggttccttccagtgacattattactttatataccgcgc |
30123042 |
T |
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| Q |
208 |
caactctggttgtagccatctgttgctcttcgcagttcctctgctacaaaaagttttgccttttctccttttccataagacgagaatttataccgtaaaa |
307 |
Q |
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| T |
30123043 |
caactctggttgtagctatctgttgctctttgcagttcctctgctataaaaagttttgccttttctccttttccataagacgagaatttataccgtaaaa |
30123142 |
T |
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| Q |
308 |
ggtaagtatcctccattttggttgaacagctttgccttacgaatactttctttttctatatgtattgatataacttgcaccaatgctaacacctgcaaat |
407 |
Q |
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| T |
30123143 |
agtaagtagcctccattttggttgaacagctttgccttacgaatactttctttttctttatgtattgatataacttgcaccaatgctaacacctgcaaat |
30123242 |
T |
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| Q |
408 |
acacaaacacagaaattttcaaattcatcattttgattttaccctggataacacaccaatggctccttcatcattcatca |
487 |
Q |
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| T |
30123243 |
acacaaacac--aaattttcaaattcatcattttgattttaccctggataacacaccaatggctccttcatcattcatca |
30123320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 86 - 175
Target Start/End: Complemental strand, 30115982 - 30115890
Alignment:
| Q |
86 |
gttgatctgagataagatgactactt---tgacaaaagtttctatttggttcctgtcaagctgtttcgactttttaactgcaattatggttcc |
175 |
Q |
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| T |
30115982 |
gttgatctgagataagatgactacttcgttgacaaacgtttctatttggtttctgtcaaggtgttttgactttttaactgcgactatggttcc |
30115890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 86 - 188
Target Start/End: Complemental strand, 30105891 - 30105786
Alignment:
| Q |
86 |
gttgatctgagataagatgactactt---tgacaaaagtttctatttggttcctgtcaagctgtttcgactttttaactgcaattatggttccttccagt |
182 |
Q |
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| T |
30105891 |
gttgatctgtgacaagatgaccacttcattgacaaaagtctctatctggttcctttctagttcttttgactttttaactgcaactatggttccatctggt |
30105792 |
T |
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| Q |
183 |
aacatt |
188 |
Q |
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| T |
30105791 |
aacatt |
30105786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 284
Target Start/End: Complemental strand, 30115831 - 30115761
Alignment:
| Q |
214 |
tggttgtagccatctgttgctcttcgcagttcctctgctacaaaaagttttgccttttctccttttccata |
284 |
Q |
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| T |
30115831 |
tggttgtagtcatctgttgctctttggagctcctctgctgtaaaaagctttgccatttctccatttccata |
30115761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 287
Target Start/End: Complemental strand, 30105744 - 30105667
Alignment:
| Q |
210 |
actctggttgtagccatctgttgctcttcgcagttcctctgctacaaaaagttttgccttttctccttttccataaga |
287 |
Q |
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| T |
30105744 |
actccggttgtagttatctgttgctctttgcagctcttctgccgtaaaaagctttgccatttctccatttccataaga |
30105667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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